prot_H-paniculata_contig930.17081.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig930.17081.1
Unique Nameprot_H-paniculata_contig930.17081.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length625
Homology
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI)

HSP 1 Score: 306 bits (783), Expect = 4.690e-92
Identity = 223/505 (44.16%), Postives = 282/505 (55.84%), Query Frame = 0
Query:  164 EILATLLSP------------AQHIMP---------AQETTEVISNAVTGAETSYPPCALEEMFEAVEQALPMFRRRRQATLFKQVKGVVEGMCHRSFTRQHLAQIVFVQPDAYKLSVRAESRLTRGGYILRDLLLEIGSTSEGDAASQTSIKSSGNSKESRPALDAREHTPMGRGSGSGRRILSDGXXXXXXXXXXXXXXXXAAIRRREVFRQLLSETRARHCTCAGS---AAGSSSDRRGSTRECLCLPQAPLPDTSPLPADG-------------QTEDQATVSA--RVAANGLSPSVRGLSALHHSWEGA-----------GEDEDEHHAPKDVEDLRQRLRAKDERMKLEENKSEEEKEADRRRKGNLPALADAVRSFFAHARRTTCALDTVVDALAGSARLSLSSKEAKERLRMLADVVPEWCSIVSPPFTAAPTAAGVGRGGVGLSGKTGVGTAASTRRSSGDGVRPTRRKEVVTVNTRIRFGEVRQMVVFMAGGGDS 618
            ++LATLLSP            AQH            AQE++   S   +G      PC LE MF A+EQ L +FRRRRQATL KQ+K  VEGMC RSFTRQHLA+I FVQPDAYKLS R ++R TRGGY L+D+ +E G +     A +  +       +++ A   R       G G+      DG                 + RRRE+F +LL+  +ARHC C GS   A G S+ R     EC CLPQAPLPDT PL ADG               E  +T     R   +G S    G + L  ++ G              DE+   APK+VE LR+RLR KD     E NK+EEEKEADRRRKGNLPA+ADAVRS+FAHA RTTC+LD +++AL+ S++ +LS KEA++R+RMLA +VPEWC+I++P    AP+A G G    G+ G              G   RP + K+VV VNTRIRF EVRQM+ FM+GGG S
Sbjct:  147 KMLATLLSPVAAARQDTRPPDAQHDQAPGTPISSRGAQESSA--SGRDSGEGHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPP--PADEACLDD-----DTQGARRDRVGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRD----ECSCLPQAPLPDTRPLRADGIGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGGGGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTEEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVRMLASIVPEWCTIIAP---RAPSAGGGG----GIDG--------------GLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGAS 617          
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE)

HSP 1 Score: 287 bits (735), Expect = 1.920e-87
Identity = 208/440 (47.27%), Postives = 257/440 (58.41%), Query Frame = 0
Query:  205 MFEAVEQALPMFRRRRQATLFKQVKGVVEGMCHRSFTRQHLAQIVFVQPDAYKLSVRAESRLTRGGYILRDLLLEIG-STSEGDAASQTSIKSSGNSKESRPALDAREHTPMGRGSGSGRRILSDGXXXXXXXXXXXXXXXXAAI--RRREVFRQLLSETRARHCTCAGSAAGSSSDRRGSTRECLCLPQAPLPDTSPLPADG---------------------QTEDQATVSARVAANGLS----PSVRGLSALHHSWEGAGEDEDEH--HAPKDVEDLRQRLRAKDERMKLEENKSEEEKEADRRRKGNLPALADAVRSFFAHARRTTCALDTVVDALAGSARLSLSSKEAKERLRMLADVVPEWCSIVSPPFTAAPTAAGVGRGGVGLSGKTGVGTAASTRRSSGDGVRPTRRKEVVTVNTRIRFGEVRQMVVFMAG 614
            MF A+EQ L +FRRRRQATL KQ+K  VEGMC RSFTRQHLAQI FVQPDAYKLS + ++R TRGGY LRD+ +E G S    D A                    R+       +G G    +D XXXXXXXXXX       A+  RRR +F +LL+  RARHC C GS  G +++      EC CLPQAPLPDT PL ADG                     Q  +++ V  R    G+     P       +     G   D DE    APK++E LR+RLR KD     E NK+ EEKEADRRRKGNLPA+ADAVRS+FAHA RTTC+LD +++AL+ S++ +LS KEA++R+RMLA +VPEWC+I++PP   AP A G G    G+ G              G   RP + K+VV VNTRIRF EVRQM+ FM+G
Sbjct:    1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGAR----------RDRVGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSE-GITNEPSAPRDECSCLPQAPLPDTRPLRADGISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLMEALSSSSKHALSRKEARDRVRMLASIVPEWCTIIAPP---APLAGGGG----GIDG--------------GLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSG 408          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW8_ECTSI4.690e-9244.16CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K955_9PHAE1.920e-8747.27CDT1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 451..478
NoneNo IPR availableGENE3D1.10.10.1420coord: 443..548
e-value: 4.0E-16
score: 60.9
NoneNo IPR availablePANTHERPTHR28637FAMILY NOT NAMEDcoord: 202..395
coord: 364..546
NoneNo IPR availablePANTHERPTHR28637:SF1DNA REPLICATION FACTOR CDT1coord: 202..395
coord: 364..546
IPR014939CDT1 Geminin-binding domain-likeSMARTSM01075CDT1_2coord: 195..396
e-value: 0.0013
score: 9.8
IPR014939CDT1 Geminin-binding domain-likePFAMPF08839CDT1coord: 202..265
e-value: 6.1E-15
score: 56.0
IPR032054DNA replication factor Cdt1, C-terminalPFAMPF16679CDT1_Ccoord: 454..545
e-value: 3.4E-16
score: 59.4
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 191..360

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig930contigH-paniculata_contig930:17028..23139 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig930.17081.1mRNA_H-paniculata_contig930.17081.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig930 16976..23923 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig930.17081.1 ID=prot_H-paniculata_contig930.17081.1|Name=mRNA_H-paniculata_contig930.17081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=625bp
MKRAAKISESPSGKKRREGPAAKRGGSRGARLVAFVKDTGTGAPEAPSPS
RRIPAKSRAATSGAAGATRASRSATSTRNAADGQSVSSSAAGRQKSGSIG
TRASPRSSRGGASSGEVTSCVVPKKRRLSPGGARSARGEVGVVKGDGVIE
GTKNSSGTLGHEAEILATLLSPAQHIMPAQETTEVISNAVTGAETSYPPC
ALEEMFEAVEQALPMFRRRRQATLFKQVKGVVEGMCHRSFTRQHLAQIVF
VQPDAYKLSVRAESRLTRGGYILRDLLLEIGSTSEGDAASQTSIKSSGNS
KESRPALDAREHTPMGRGSGSGRRILSDGGGSRNGASFISGGGGSAAIRR
REVFRQLLSETRARHCTCAGSAAGSSSDRRGSTRECLCLPQAPLPDTSPL
PADGQTEDQATVSARVAANGLSPSVRGLSALHHSWEGAGEDEDEHHAPKD
VEDLRQRLRAKDERMKLEENKSEEEKEADRRRKGNLPALADAVRSFFAHA
RRTTCALDTVVDALAGSARLSLSSKEAKERLRMLADVVPEWCSIVSPPFT
AAPTAAGVGRGGVGLSGKTGVGTAASTRRSSGDGVRPTRRKEVVTVNTRI
RFGEVRQMVVFMAGGGDSHGGGRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014939CDT1_Gemini-bd-like
IPR032054Cdt1_C
IPR036390WH_DNA-bd_sf