mRNA_H-paniculata_contig930.17081.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Match: D8LEW8_ECTSI (CDT1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW8_ECTSI) HSP 1 Score: 306 bits (784), Expect = 1.920e-89 Identity = 223/505 (44.16%), Postives = 282/505 (55.84%), Query Frame = 2 Query: 542 EILATLLSP------------AQHIMP---------AQETTEVISNAVTGAETSYPPCALEEMFEAVEQALPMFRRRRQATLFKQVKGVVEGMCHRSFTRQHLAQIVFVQPDAYKLSVRAESRLTRGGYILRDLLLEIGSTSEGDAASQTSIKSSGNSKESRPALDAREHTPMGRGSGSGRRILSDGXXXXXXXXXXXXXXXXAAIRRREVFRQLLSETRARHCTCAGS---AAGSSSDRRGSTRECLCLPQAPLPDTSPLPADG-------------QTEDQATVSA--RVAANGLSPSVRGLSALHHSWEGA-----------GEDEDEHHAPKDVEDLRQRLRAKDERMKLEENKSEEEKEADRRRKGNLPALADAVRSFFAHARRTTCALDTVVDALAGSARLSLSSKEAKERLRMLADVVPEWCSIVSPPFTAAPTAAGVGRGGVGLSGKTGVGTAASTRRSSGDGVRPTRRKEVVTVNTRIRFGEVRQMVVFMAGGGDS 1906 ++LATLLSP AQH AQE++ S +G PC LE MF A+EQ L +FRRRRQATL KQ+K VEGMC RSFTRQHLA+I FVQPDAYKLS R ++R TRGGY L+D+ +E G + A + + +++ A R G G+ DG + RRRE+F +LL+ +ARHC C GS A G S+ R EC CLPQAPLPDT PL ADG E +T R +G S G + L ++ G DE+ APK+VE LR+RLR KD E NK+EEEKEADRRRKGNLPA+ADAVRS+FAHA RTTC+LD +++AL+ S++ +LS KEA++R+RMLA +VPEWC+I++P AP+A G G G+ G G RP + K+VV VNTRIRF EVRQM+ FM+GGG S Sbjct: 147 KMLATLLSPVAAARQDTRPPDAQHDQAPGTPISSRGAQESSA--SGRDSGEGHDLDPCPLEAMFLALEQVLALFRRRRQATLLKQIKPAVEGMCGRSFTRQHLARIAFVQPDAYKLSSRTDARPTRGGYRLKDIFIETGPSPP--PADEACLDD-----DTQGARRDRVGKAPAAGKGAVAGADRDGRNGGDTGGHSIAGGEALSARRREIFLRLLASAKARHCKCGGSRGIAGGPSAPRD----ECSCLPQAPLPDTRPLRADGIGGGSRAAPDAGGAVESPSTSQGLERSPGDGRSGGGGGGNLLPGTFRGGCVASGMGGGRVDYDEEGSDAPKNVEALRERLRQKDALSAKERNKTEEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLIEALSSSSKHALSHKEARDRVRMLASIVPEWCTIIAP---RAPSAGGGG----GIDG--------------GLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGGGAS 617
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Match: A0A6H5K955_9PHAE (CDT1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K955_9PHAE) HSP 1 Score: 288 bits (736), Expect = 5.360e-85 Identity = 209/444 (47.07%), Postives = 258/444 (58.11%), Query Frame = 2 Query: 665 MFEAVEQALPMFRRRRQATLFKQVKGVVEGMCHRSFTRQHLAQIVFVQPDAYKLSVRAESRLTRGGYILRDLLLEIG-STSEGDAASQTSIKSSGNSKESRPALDAREHTPMGRGSGSGRRILSDGXXXXXXXXXXXXXXXXAAI--RRREVFRQLLSETRARHCTCAGSAAGSSSDRRGSTRECLCLPQAPLPDTSPLPADG---------------------QTEDQATVSARVAANGLS----PSVRGLSALHHSWEGAGEDEDEH--HAPKDVEDLRQRLRAKDERMKLEENKSEEEKEADRRRKGNLPALADAVRSFFAHARRTTCALDTVVDALAGSARLSLSSKEAKERLRMLADVVPEWCSIVSPPFTAAPTAAGVGRGGVGLSGKTGVGTAASTRRSSGDGVRPTRRKEVVTVNTRIRFGEVRQMVVFMAGGGDS 1906 MF A+EQ L +FRRRRQATL KQ+K VEGMC RSFTRQHLAQI FVQPDAYKLS + ++R TRGGY LRD+ +E G S D A R+ +G G +D XXXXXXXXXX A+ RRR +F +LL+ RARHC C GS G +++ EC CLPQAPLPDT PL ADG Q +++ V R G+ P + G D DE APK++E LR+RLR KD E NK+ EEKEADRRRKGNLPA+ADAVRS+FAHA RTTC+LD +++AL+ S++ +LS KEA++R+RMLA +VPEWC+I++PP AP A G G G+ G G RP + K+VV VNTRIRF EVRQM+ FM+G S Sbjct: 1 MFLALEQVLTLFRRRRQATLLKQIKPAVEGMCGRSFTRQHLAQIAFVQPDAYKLSSKTDARPTRGGYRLRDIFIETGPSPPPADEACLDDDTQGAR----------RDRVGKAPAAGKGAVAGADXXXXXXXXXXXRSNAGGEALSARRRGIFLRLLASARARHCKCGGSE-GITNEPSAPRDECSCLPQAPLPDTRPLRADGISGGSRAAAHAGGAAESPSTSQGLERSPVDGRCGGGGIGGNLLPGTSRGGCVASGMSGGRVDYDEEGPDAPKNLEALRERLRQKDALSAKERNKTAEEKEADRRRKGNLPAMADAVRSYFAHAGRTTCSLDVLMEALSSSSKHALSRKEARDRVRMLASIVPEWCTIIAPP---APLAGGGG----GIDG--------------GLVARPMKGKDVVRVNTRIRFDEVRQMIAFMSGSAAS 412 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig930.17081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig930.17081.1 >prot_H-paniculata_contig930.17081.1 ID=prot_H-paniculata_contig930.17081.1|Name=mRNA_H-paniculata_contig930.17081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=625bp MKRAAKISESPSGKKRREGPAAKRGGSRGARLVAFVKDTGTGAPEAPSPSback to top mRNA from alignment at H-paniculata_contig930:16976..23923+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig930.17081.1 ID=mRNA_H-paniculata_contig930.17081.1|Name=mRNA_H-paniculata_contig930.17081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6948bp|location=Sequence derived from alignment at H-paniculata_contig930:16976..23923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig930:16976..23923+ >mRNA_H-paniculata_contig930.17081.1 ID=mRNA_H-paniculata_contig930.17081.1|Name=mRNA_H-paniculata_contig930.17081.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3750bp|location=Sequence derived from alignment at H-paniculata_contig930:16976..23923+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |