mRNA_H-paniculata_contig9095.16926.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig9095.16926.1
Unique NamemRNA_H-paniculata_contig9095.16926.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A6H5JTI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTI7_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.940e-84
Identity = 176/344 (51.16%), Postives = 204/344 (59.30%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGPDGGKIAAHRYLDSNPEPTRSEVENVPAVPAPARARAGSLAEE--AEVNGREAGIACPSAGAK---------WGDYEGPESIIDLALRCALIDD--------GGTANG-------LVTFVHEVKKNVGPQ 954
            VVV+SNFTSALDVL  +A  N WGFLRLDGGT + ERQ+LVDRFNRA PE+LFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQ K+V MYRLL+TGTLEESIFQRQIFKGALYDLIHDSN+  S+                                      GK+ RGFS +EL+ELFVLK ET  DTYDKLRRG+         A    +                    R +  +L  E  A  +G E G   P+A A          W DY GP +++D ALR AL+++        GG+          +VTFV EVK+   P+
Sbjct:  748 VVVASNFTSALDVLETLAERNSWGFLRLDGGTTTNERQNLVDRFNRASPEDLFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVCMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKEXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXGKSGRGFSQEELKELFVLKAETRSDTYDKLRRGRAAATPRAAGAAGVREGG------------------RYQEVTLEREVGARGDGEEDGWQGPTAAAAPVVDVEEQAWEDYVGPSAVVDKALRLALLEEATGTPSQVGGSXXXXXXXXXXVVTFVREVKRGGRPE 1067          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: D8LMS0_ECTSI (SNF2-related domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMS0_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 5.340e-84
Identity = 170/316 (53.80%), Postives = 198/316 (62.66%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGPD---GGKIAAH---RYLDSNPEPTRSEVENVPAVPAPARARAGSLAEEAEVNGREAGIACPSAGA----KWGDYEGPESIIDLALRCALIDDG-GTANGLV 915
            VVV+SNFTSALDVL  +A  N WGFLRLDGGT +  RQ+LVDRFNRA PE+LFLF+LS KAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQ K+VSMYRLL+TGTLEESIFQRQIFKGALYDLIHDSN+  S+                                     G K+ RGFS +EL+ELFVL+ ET  DTYDKLRRG+        G  +AH   RY +  PE                   AG+  +  E  GR A  A     A     W DY GP +++D ALR AL+++  GT++ +V
Sbjct:  778 VVVASNFTSALDVLETLAERNAWGFLRLDGGTTTNARQNLVDRFNRASPEDLFLFYLSTKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQTKEVSMYRLLSTGTLEESIFQRQIFKGALYDLIHDSNDDPSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-KSGRGFSQEELKELFVLRTETRSDTYDKLRRGRAAATPTAAGAASAHEGGRYQEVTPE-----------------REAGARGDGEEDGGRGATAAAAPVVAVEEEAWEDYGGPSAVVDKALRLALLEEPTGTSSQVV 1075          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: UPI000D1C7E7D (DNA repair and recombination protein RAD54-like n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C7E7D)

HSP 1 Score: 171 bits (434), Expect = 2.350e-44
Identity = 96/212 (45.28%), Postives = 123/212 (58.02%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSN--EPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRR 630
            +V++SNFT  LD++ A+   + W F+RLDGGT   ERQSLV+RFNR + E   +F LS+KAGG GLNL+GANR+VL D DWNPA D Q M+R+WR GQ K V +YRLL+TG++EE I+QRQI K  L     D +  +P+ +RT                                      N + FS  ELREL  L  ET C+TYD L R
Sbjct:  571 IVIASNFTQTLDLIEAMCNEHSWKFVRLDGGTMISERQSLVERFNRRIGEAS-IFLLSSKAGGTGLNLIGANRLVLVDPDWNPANDAQVMSRIWREGQPKPVKIYRLLSTGSIEEKIYQRQIMKKDLTSFFGDQSTYQPTCKRT--------------------------------------NDQKFSRQELRELLKLPSETKCETYDLLCR 743          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A2K1K7S9_PHYPA (Uncharacterized protein n=5 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1K7S9_PHYPA)

HSP 1 Score: 170 bits (430), Expect = 1.280e-43
Identity = 92/215 (42.79%), Postives = 128/215 (59.53%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGGP 645
            VVV SNFT  LD++  +  + GW +LRLDG T + +RQ LVD+ N  + + +F+F LS+KAGG GLNL+GANR+VLFD DWNPATD QA+AR+WR GQ K V +YRLL+TG++EE I+QRQI KG +   +    +  ++++         +GR+                             FS +EL+ELF L   T CDT+D + R +  P
Sbjct:  861 VVVVSNFTRTLDLIQDMCTSQGWNWLRLDGSTEASKRQLLVDQLNSGVGD-VFVFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDSQAIARIWREGQLKPVLIYRLLSTGSIEEKIYQRQIMKGGMSAAVEGDADVHTKKS--------NIGRH-----------------------------FSKEELKELFTLNLATNCDTFDLISRTKTAP 1037          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S2W8P1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8P1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.470e-43
Identity = 86/147 (58.50%), Postives = 111/147 (75.51%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALP-EELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDD 438
            VV+ SNFT+ALD+  A+A  +GW ++RLDG T  +ERQ+LVDR NR +P + LFLF LS+ AGGVGLNLVGA+R+VLFD+DWNPA D Q MARVWR GQ++ V +YRLL TGT+EE ++QRQ+ K  L   + D+  PS  R  QD+
Sbjct:  594 VVLVSNFTTALDLFEAMADHHGWQYVRLDGSTPQQERQALVDRCNRRVPGDNLFLFLLSSHAGGVGLNLVGASRLVLFDTDWNPAVDKQVMARVWRNGQRRPVFIYRLLCTGTIEEKMYQRQLSKDELSCAVEDAGGPSQGRFSQDE 740          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A2R6WFC2_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WFC2_MARPO)

HSP 1 Score: 169 bits (429), Expect = 1.730e-43
Identity = 99/210 (47.14%), Postives = 121/210 (57.62%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRR 630
            +VV SNFT  LD++ ++     W +LRLDG T   ERQS VDRFN    EE  +F LS+KAGG GLNL+GANR+VLFD DWNPATD QAMARVWR GQ+K V +YRLL+TG+LEE I+QRQI K  +   + +  E            H G                               R FS +ELRELF L+ +T CDTYD L +
Sbjct:  486 IVVVSNFTQTLDIIQSLCEQEKWKWLRLDGTTEVSERQSKVDRFNSDYSEER-IFLLSSKAGGTGLNLIGANRLVLFDPDWNPATDAQAMARVWRDGQRKPVLIYRLLSTGSLEEKIYQRQIMKQEIAAAVGEQVEGQ--------LGHAG-------------------------------RHFSREELRELFTLRLDTRCDTYDLLTK 655          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S1FQD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FQD2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.130e-43
Identity = 98/218 (44.95%), Postives = 126/218 (57.80%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRE-TPCDTYDKLRRGQGGPDG 651
            VVVSSNFTS LD+L       GW F RLDG T S++RQ +VD FNR   E+ F F LSA+AGG GLNLVGA+R++++D DWNPATD Q MAR++R GQ K  ++YRL TTGT+EE ++QRQI KG L   + +    S                        T G S +        GG++S  F+ +E+++ F LK E    DT  KL  G G  DG
Sbjct:  135 VVVSSNFTSVLDILARHLEMRGWTFQRLDGSTCSEKRQEMVDVFNRTSAEQNFCFLLSARAGGCGLNLVGASRLIMYDPDWNPATDLQTMARIYRTGQTKPTTIYRLFTTGTVEEIVYQRQIQKGNLASAVSEKTVAS------------------------TNGGSGN--------GGRSSSSFTAEEIKDCFDLKDEDVKSDTQRKL--GWGDYDG 318          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A383VN37_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VN37_TETOB)

HSP 1 Score: 167 bits (423), Expect = 1.120e-42
Identity = 99/221 (44.80%), Postives = 132/221 (59.73%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNE-PSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRG---------FSHDELRELFVLKRETPCDTYDKLRRG 633
            VV+ SN+T  LD+  A+    G+  LRLDG T+  +RQ LV + N A   ++F+F LS+KAGG GLNLVGANR++LFD DWNPATD QA ARVWR GQ+K+V +YRLLT GT+EE +FQRQI K  L  ++  +   P +    Q      G G  A                + G+GGGK+++G          S +ELRELF L+ +   DTY+ +R G
Sbjct:  547 VVIVSNYTQTLDLFAALCRQRGYVHLRLDGSTSITKRQKLVGQLN-APGSKVFVFLLSSKAGGCGLNLVGANRLILFDPDWNPATDKQAAARVWRDGQRKRVYVYRLLTAGTIEEKVFQRQISKEGLQQVVDAAAAAPGALGAAQGQGASAGEGLAAE---------------DGGKGGGKSNQGGQGASSMSLMSAEELRELFSLRPDVASDTYEVIRGG 751          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A7S4K0Z8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0Z8_9STRA)

HSP 1 Score: 164 bits (415), Expect = 4.570e-42
Identity = 96/215 (44.65%), Postives = 123/215 (57.21%), Query Frame = 1
Query:    1 VVVSSNFTSALDVL-GAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPEELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHEGVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRETPCDTYDKLRRGQGG 642
            +V+ SN+TSAL ++   +    G+  +RLDG T    RQSLVD FNR+  E  F+F LS+KAGG GLNLVGANR+V+FD DWNPATD QAMARV+R GQ K   +YRL TTGT+EE I+QRQ+ K  L  L  D    S +                                 +GRGG     GF+ +ELR+ F LK +  CDT +K+ R + G
Sbjct:  417 IVIVSNYTSALSIIESTLLKPRGYNSVRLDGSTEGNARQSLVDTFNRSSAERQFVFLLSSKAGGCGLNLVGANRLVMFDPDWNPATDMQAMARVYRQGQTKPSYIYRLFTTGTVEEVIYQRQVQKNNLATLTVDGGGASKK---------------------------------SGRGG---RAGFTEEELRDCFTLKEDIDCDTRNKIGRARWG 595          
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Match: A0A0L0FQD1_9EUKA (Helicase C-terminal domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQD1_9EUKA)

HSP 1 Score: 153 bits (387), Expect = 1.040e-41
Identity = 83/147 (56.46%), Postives = 101/147 (68.71%), Query Frame = 1
Query:    1 VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPE-ELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKKKVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDD 438
            VV+ SN+T  LD+   + G   + F+RLDG  + K+RQ LVD+FN   PE   FLF LS+KAGG GLNL+GANR+VLFD DWNPATD QAMARVWR GQKK   +YRL++TG++EE IFQRQ  K AL   + D  E   R    DD
Sbjct:    1 VVLVSNYTQTLDLFEQMCGTRRYQFIRLDGSLSIKKRQKLVDQFND--PEGTTFLFLLSSKAGGCGLNLIGANRLVLFDPDWNPATDLQAMARVWRDGQKKTCFIYRLVSTGSIEEKIFQRQAHKQALSSCVVDEEEDVQRHFAMDD 145          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig9095.16926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTI7_9PHAE1.940e-8451.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS0_ECTSI5.340e-8453.80SNF2-related domain-containing protein n=1 Tax=Ect... [more]
UPI000D1C7E7D2.350e-4445.28DNA repair and recombination protein RAD54-like n=... [more]
A0A2K1K7S9_PHYPA1.280e-4342.79Uncharacterized protein n=5 Tax=Physcomitrium pate... [more]
A0A7S2W8P1_9STRA1.470e-4358.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R6WFC2_MARPO1.730e-4347.14Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A7S1FQD2_9STRA5.130e-4344.95Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A383VN37_TETOB1.120e-4244.80Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A7S4K0Z8_9STRA4.570e-4244.65Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A0L0FQD1_9EUKA1.040e-4156.46Helicase C-terminal domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig9095contigH-paniculata_contig9095:7334..9564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score286.6
Seed ortholog evalue1.4e-74
Seed eggNOG ortholog2880.D8LMS0
Preferred nameRAD54B
KEGG koko:K06811,ko:K10779,ko:K10875,ko:K10877
KEGG Pathwayko03440,ko05226,map03440,map05226
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0000724,GO:0000725,GO:0000819,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003724,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007131,GO:0007135,GO:0007275,GO:0007568,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008340,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010259,GO:0015616,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0030491,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033554,GO:0034641,GO:0035825,GO:0042221,GO:0042493,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0045132,GO:0045144,GO:0046483,GO:0048285,GO:0048856,GO:0050896,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0061983,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:1903046
EggNOG free text desc.DNA repair and recombination protein
EggNOG OGsCOG0553@1,KOG0390@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Exons3
Model size957
Cds size957
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig9095.16926.1prot_H-paniculata_contig9095.16926.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig9095 7334..9564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931134.0243926-CDS-H-paniculata_contig9095:7333..80261622931134.0243926-CDS-H-paniculata_contig9095:7333..8026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 7334..8026 -
1691481605.7856236-CDS-H-paniculata_contig9095:7333..80261691481605.7856236-CDS-H-paniculata_contig9095:7333..8026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 7334..8026 -
1622931134.0448847-CDS-H-paniculata_contig9095:8718..87791622931134.0448847-CDS-H-paniculata_contig9095:8718..8779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 8719..8779 -
1691481605.8065593-CDS-H-paniculata_contig9095:8718..87791691481605.8065593-CDS-H-paniculata_contig9095:8718..8779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 8719..8779 -
1622931134.0650122-CDS-H-paniculata_contig9095:9361..95641622931134.0650122-CDS-H-paniculata_contig9095:9361..9564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 9362..9564 -
1691481605.8178287-CDS-H-paniculata_contig9095:9361..95641691481605.8178287-CDS-H-paniculata_contig9095:9361..9564Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig9095 9362..9564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig9095.16926.1

>prot_H-paniculata_contig9095.16926.1 ID=prot_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=319bp
VVVSSNFTSALDVLGAVAGANGWGFLRLDGGTASKERQSLVDRFNRALPE
ELFLFFLSAKAGGVGLNLVGANRIVLFDSDWNPATDDQAMARVWRLGQKK
KVSMYRLLTTGTLEESIFQRQIFKGALYDLIHDSNEPSSRRTCQDDTNHE
GVGRYASMYQTRTTGSSCSNSREAGRGGGKNSRGFSHDELRELFVLKRET
PCDTYDKLRRGQGGPDGGKIAAHRYLDSNPEPTRSEVENVPAVPAPARAR
AGSLAEEAEVNGREAGIACPSAGAKWGDYEGPESIIDLALRCALIDDGGT
ANGLVTFVHEVKKNVGPQ*
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mRNA from alignment at H-paniculata_contig9095:7334..9564-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig9095.16926.1 ID=mRNA_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2231bp|location=Sequence derived from alignment at H-paniculata_contig9095:7334..9564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGTTTCTTCGAACTTCACGTCCGCTTTGGACGTGCTGGGCGCTGT GGCGGGTGCAAACGGGTGGGGTTTCCTGCGACTGGACGGCGGTACGGCCT CCAAAGAGAGGCAGTCCCTTGTGGACCGGTTCAACAGGGCCCTCCCCGAA GAACTGTTCTTGTTTTTCCTCTCTGCGAAGGCGGGCGGAGTCGGCCTCAA CTTGTGAGCAGCGTGGGTTCTGGGTTCCGTATCATGCATTTCCGTACCGT GCTGCCCAGGCCTGCTATTCGGGCCGTATTTTAGAATACAAAGCCACAGT CGCTCATATAAATGTTGACGCATACGAATGCCTCGAATGGTGGAATTGTT ATTTCCCCCACGTATTCGTATGAGTGTCAGCATATGCGGGCGGGCACATG GCATAAATGTGCTCTACTGCTGAATCTTGAGGCATATATATATATTTCGT TTTTTCGTCTGAACCGTTAGAAGTATTAGATCCCGTCCGGGGGGTGAAAT GCTCCGTCCGTGTGCTGGTGGGTTGTGGGGCCAAGGTTGCACACGTGTGT TTAGTTAAGGAGATGATGACACTTTTATGGCATGCGTCCACCTAACCCAA CTTGGTGTTCCTGGCGAGCTAGTCGAGTTGCTGGCCTTCGCATGCGAAAC GACGAGAGACTGGCTGACGTTCTGTGTGTCACGCATTTCAAGTTTTAGGA GGGTCGTTGATCCGTTGAAATAGAAACCATTTTCTTGCCGAGAGCATGAA GACCCACCCTGTGCGGTTTCTTCTGTTTTTCCCAGGGTCGGGGCAAACCG CATCGTCCTGTTCGACTCGGACTGGAATCCAGCCACAGATGACCAGGTGA GGAGAAGAAAGCTCTGCTATAGCCTGCAACCAACGGGGATTGACTGACTG ATCGATAGTCTAATGTGATGAATAAAAAACAAGTTTAACAATGGTAGCTG TGGCGGCGTAGCTCAGATCGATTTTGTGATTAATACAGGAGAAAAAGCTG TAATTTCTATGTGCGATCGGATTCCGATTATCGTCTTTCATTGCTGGATT TTGGAGAAAACCAACGATCAAGCGATTACCGCTTTCCTGGTTTCTTGATG GTGATACGCAATAATTTTTCGAGTGCACCGAGCCGTTTACGGTGAGTACA ACGGCTGTGTGGGCACAACCATAGCTGTCACTGATTGCCTCTGCCGAGTG TCGAAAGGTTCGAATCTTGTCGAATTGCCACGTGAATGAATCCCACAACA CATGGATATGTGAGAATAAAAAATCTATGAGTCACTAGTTGGCTATGTAA CCACCCAAACACCGTGCGGCCCTCACAGCCCTCAATCAATGAACAGAAGA AATTTATTGAAAAGTGAATTTCTATTCATTCTTTGGGCACGTGAGTTACT ACTGAACGAGGTAGCTCTCGCCCTCCATGTCCTGGGGAAAAATGTATCGC CAGCCACGCAAGGAACCGAGAAATATTATGTTGAGCTCTTGGCTATTAAC CTATTGTTCCCGCCCATCGATCAACCGCTCGAAAACAGGCCATGGCGCGC GTGTGGCGTCTCGGACAGAAAAAAAAGGTGTCCATGTACAGGTTGCTCAC GACAGGAACTCTGGAGGAGAGCATTTTTCAGCGGCAGATATTCAAAGGGG CGCTCTACGACCTCATCCACGACTCCAACGAACCATCTTCACGACGAACT TGTCAAGATGATACGAACCACGAGGGAGTTGGTCGTTACGCCAGCATGTA CCAAACACGCACGACTGGTAGTAGTTGTAGTAACTCCCGGGAGGCAGGAC GCGGCGGAGGGAAAAACAGCCGAGGGTTCAGCCACGACGAACTGAGAGAG CTGTTCGTGCTCAAGAGGGAGACCCCATGCGACACCTACGACAAGCTGAG ACGAGGGCAAGGGGGACCGGACGGTGGTAAGATAGCAGCGCACCGTTATC TCGACAGCAACCCTGAGCCAACCCGCAGCGAAGTCGAGAACGTACCAGCA GTACCAGCACCAGCGAGAGCGAGGGCGGGTTCGCTTGCTGAGGAAGCTGA AGTCAACGGCAGAGAGGCGGGGATCGCATGCCCATCTGCCGGGGCGAAAT GGGGAGACTACGAAGGTCCCGAGAGCATTATTGACCTGGCCTTGCGTTGT GCTTTGATAGATGATGGAGGCACAGCCAACGGCCTTGTTACGTTTGTTCA TGAGGTGAAAAAAAACGTCGGCCCGCAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig9095:7334..9564-

>mRNA_H-paniculata_contig9095.16926.1 ID=mRNA_H-paniculata_contig9095.16926.1|Name=mRNA_H-paniculata_contig9095.16926.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1914bp|location=Sequence derived from alignment at H-paniculata_contig9095:7334..9564- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGGTTTCTTCGAACTTCACGTCCGCTTTGGACGTGCTGGGCGCTGT
GGCGGGTGCAAACGGGTGGGGTTTCCTGCGACTGGACGGCGGTACGGCCT
CCAAAGAGAGGCAGTCCCTTGTGGACCGGTTCAACAGGGCCCTCCCCGAA
GAACTGTTCTTGTTTTTCCTCTCTGCGAAGGCGGGCGGAGTCGGCCTCAA
CTTGTGGTGGTTTCTTCGAACTTCACGTCCGCTTTGGACGTGCTGGGCGC
TGTGGCGGGTGCAAACGGGTGGGGTTTCCTGCGACTGGACGGCGGTACGG
CCTCCAAAGAGAGGCAGTCCCTTGTGGACCGGTTCAACAGGGCCCTCCCC
GAAGAACTGTTCTTGTTTTTCCTCTCTGCGAAGGCGGGCGGAGTCGGCCT
CAACTTGGTCGGGGCAAACCGCATCGTCCTGTTCGACTCGGACTGGAATC
CAGCCACAGATGACCAGGGTCGGGGCAAACCGCATCGTCCTGTTCGACTC
GGACTGGAATCCAGCCACAGATGACCAGGCCATGGCGCGCGTGTGGCGTC
TCGGACAGAAAAAAAAGGTGTCCATGTACAGGTTGCTCACGACAGGAACT
CTGGAGGAGAGCATTTTTCAGCGGCAGATATTCAAAGGGGCGCTCTACGA
CCTCATCCACGACTCCAACGAACCATCTTCACGACGAACTTGTCAAGATG
ATACGAACCACGAGGGAGTTGGTCGTTACGCCAGCATGTACCAAACACGC
ACGACTGGTAGTAGTTGTAGTAACTCCCGGGAGGCAGGACGCGGCGGAGG
GAAAAACAGCCGAGGGTTCAGCCACGACGAACTGAGAGAGCTGTTCGTGC
TCAAGAGGGAGACCCCATGCGACACCTACGACAAGCTGAGACGAGGGCAA
GGGGGACCGGACGGTGGTAAGATAGCAGCGCACCGTTATCTCGACAGCAA
CCCTGAGCCAACCCGCAGCGAAGTCGAGAACGTACCAGCAGTACCAGCAC
CAGCGAGAGCGAGGGCGGGTTCGCTTGCTGAGGAAGCTGAAGTCAACGGC
AGAGAGGCGGGGATCGCATGCCCATCTGCCGGGGCGAAATGGGGAGACTA
CGAAGGTCCCGAGAGCATTATTGACCTGGCCTTGCGTTGTGCTTTGATAG
ATGATGGAGGCACAGCCAACGGCCTTGTTACGTTTGTTCATGAGGTGAAA
AAAAACGTCGGCCCGCAATGAGCCATGGCGCGCGTGTGGCGTCTCGGACA
GAAAAAAAAGGTGTCCATGTACAGGTTGCTCACGACAGGAACTCTGGAGG
AGAGCATTTTTCAGCGGCAGATATTCAAAGGGGCGCTCTACGACCTCATC
CACGACTCCAACGAACCATCTTCACGACGAACTTGTCAAGATGATACGAA
CCACGAGGGAGTTGGTCGTTACGCCAGCATGTACCAAACACGCACGACTG
GTAGTAGTTGTAGTAACTCCCGGGAGGCAGGACGCGGCGGAGGGAAAAAC
AGCCGAGGGTTCAGCCACGACGAACTGAGAGAGCTGTTCGTGCTCAAGAG
GGAGACCCCATGCGACACCTACGACAAGCTGAGACGAGGGCAAGGGGGAC
CGGACGGTGGTAAGATAGCAGCGCACCGTTATCTCGACAGCAACCCTGAG
CCAACCCGCAGCGAAGTCGAGAACGTACCAGCAGTACCAGCACCAGCGAG
AGCGAGGGCGGGTTCGCTTGCTGAGGAAGCTGAAGTCAACGGCAGAGAGG
CGGGGATCGCATGCCCATCTGCCGGGGCGAAATGGGGAGACTACGAAGGT
CCCGAGAGCATTATTGACCTGGCCTTGCGTTGTGCTTTGATAGATGATGG
AGGCACAGCCAACGGCCTTGTTACGTTTGTTCATGAGGTGAAAAAAAACG
TCGGCCCGCAATGA
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