mRNA_H-paniculata_contig8869.16759.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8869.16759.1
Unique NamemRNA_H-paniculata_contig8869.16759.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A6H5KU27_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KU27_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.120e-69
Identity = 190/401 (47.38%), Postives = 213/401 (53.12%), Query Frame = 1 
Query:    1 RYASGESGGSPPKNSQRQVHCQHIVDTLKHSFQEHTKAFRDALLLRAEAEKQQNERQLKFSHSQYMAPAAKLDYPLFGNPGGNNKNGLRDRAAXXXXXXXXXXXXXXXXXXXLSTSPPYDVPPVGNDSGAPASRPSLRAESSAXXXXXGQRSPSYPASAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSVGVNNAFSGG-GGGPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGVPLPPSEPFRAGAAGAYGLRKRPVGGEGDDGEEEARRAAWQVQVQEESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFLGLMR 1200
            RYA G + GSPP NSQRQ+HC  IV TL+ S QEHTKAFRDAL+LRA  EKQQNERQ KFSHS+ +APA +LDYPLFG+ G                  XXXXXXXXXXX           P  G  + +    PS    + A     G   P   A  A                                      XX         +GG   GP                                              G P   +E  R G   A GLRKRP   +G D EEE+RRAAWQVQVQE+SK+RV+ESHKVEKMIG+LG MFSRFSTMVAAQEEVV+HIEDDVEAAHAFAEEGQAHLAKYYQ+ SGNRGIIIKVF +LI  IW+FLGLMR
Sbjct:  108 RYADGGTRGSPPANSQRQMHCAFIVTTLRRSAQEHTKAFRDALMLRAAVEKQQNERQRKFSHSRGVAPATQLDYPLFGSSGXXXXXXXXXXXXTANLPSXXXXXXXXXXXDNKGHK---HGPRKGGKAASVLPFPSGNGGTRAGGGTGGSSWPQKSAVPAPWSAEGGRNGNGNNCSTGVGKGGYDAVGAMPRATEPAAXXXXXXXRTDSNGGFRAGPHTAPTFGSANGYVPPAAGGGSGRAHAAAPP----------------GFPPLRTEASRGGGR-ATGLRKRPGREDGGDAEEESRRAAWQVQVQEDSKTRVDESHKVEKMIGDLGHMFSRFSTMVAAQEEVVMHIEDDVEAAHAFAEEGQAHLAKYYQITSGNRGIIIKVFIMLIVCIWVFLGLMR 488
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A835ZFW2_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.800e-25
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:  970 MIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLF 1185
            MIGELG MFS+FS +VAAQEE V+HIEDDVE AH FA +G AHL++YYQ +SGNRGII+KV  LL FF+W+F
Sbjct:    1 MIGELGHMFSKFSALVAAQEETVVHIEDDVEMAHGFAVDGHAHLSRYYQTISGNRGIIVKVLILLAFFVWVF 72
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A7S2XXW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXW7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.960e-16
Identity = 44/96 (45.83%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:  913 VQVQEESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFLGLMR 1200
             ++Q  SK RVEE+  +E  I E   MFS+ +TMVA Q E+V  I+DD+E A      G   L +YY ++SGNRG+IIK+F  L+ FI+LF+ L +
Sbjct:   10 AELQTSSKQRVEEARSIEATISEFATMFSKMATMVAQQGELVTRIDDDMELALGNVSAGHTELTRYYSIISGNRGLIIKIFITLMVFIFLFVVLFK 105
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: F0Y6L6_AURAN (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6L6_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 6.340e-15
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 1 
Query:  919 VQEESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            +++ S+ R++ +H +EK IG+LG++FSRFS++VA Q EVV  ++DDVE A    E G A L K  +V+ GNR + +KVFA+LI  I LF+
Sbjct:    2 LEQTSRRRLDTAHNIEKEIGKLGEVFSRFSSLVAQQAEVVERLDDDVEGALGEVEMGHAELLKAQEVLRGNRALFLKVFAVLIALIVLFV 91
[Close]
BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: I2CQ48_NANGC (t-SNARE coiled-coil homology domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQ48_NANGC)

HSP 1 Score: 81.6 bits (200), Expect = 6.480e-15
Identity = 44/89 (49.44%), Postives = 63/89 (70.79%), Query Frame = 1 
Query:  922 QEESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            Q ++ SR+ E+  VEK I ELGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G A +  Y +++ GNR +I KVFALL+ FI +F+
Sbjct:   25 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVMRIDDDMEAALEDVQKGHAEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 113
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A7S3H3X9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3X9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.090e-14
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1 
Query:  937 SRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            SR E    V+K IGEL QMFS+ + +V AQEE++  I+ D+++     +EGQ HL KY+Q +S NRG+IIKVF +LIFF+  F+
Sbjct:  216 SRAEAVQNVQKTIGELAQMFSKMAVLVTAQEEMIQRIDSDLDSTITNVDEGQQHLLKYFQYISSNRGLIIKVFLILIFFVVFFV 299
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A7S1UDN8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDN8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.680e-13
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:  925 EESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            E+ ++RV+E+H VEK IGEL  MF + +T+++ Q E ++ I+DD+  A    E+ Q  L +  Q++S NR II+  FALLIFFI+LFL
Sbjct:   55 EDVQTRVKEAHAVEKAIGELQSMFGKMATLISQQNETIVRIDDDMAEAQMEVEDAQGELTQVLQIVSENRQIILITFALLIFFIFLFL 142
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A4D9CWV4_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWV4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.050e-12
Identity = 43/89 (48.31%), Postives = 62/89 (69.66%), Query Frame = 1 
Query:  922 QEESKSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            Q ++ SR+ E+  VEK I ELGQ FSR + +VAAQ EVV+ I+DD+EAA    ++G   +  Y +++ GNR +I KVFALL+ FI +F+
Sbjct:  278 QRDTASRLREARAVEKAIVELGQTFSRMAGLVAAQGEVVVRIDDDMEAALEDVQKGHVEMVNYLRIVKGNRAVIFKVFALLLVFIVVFV 366
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BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: C5LX88_PERM5 (Syntaxin 5, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5LX88_PERM5)

HSP 1 Score: 73.2 bits (178), Expect = 7.460e-12
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 1 
Query:  961 VEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            V++ IGELGQMF + S+MV  Q+E+++ I+ DV+       EGQ  L KY+  +SGNR +I+K+FA+L+ F+  F+
Sbjct:   45 VQRTIGELGQMFEKVSSMVYEQDEMIMRIDSDVDDTMGHLNEGQNQLLKYFHSISGNRSLILKIFAILVCFVIFFV 120
[Close]
BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Match: A0A485LIS1_9STRA (Aste57867_21905 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LIS1_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.240e-11
Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = 1 
Query:  823 GAAGAYGLRKRPVGGEGDDGEEEARRAAWQVQVQEES-KSRVEESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQAHLAKYYQVMSGNRGIIIKVFALLIFFIWLFL 1188
            G   A G+R+RP    G  G   A++   Q  ++  + +SR+ ++  VE MIGE+G M+SR + ++A QEE++  IEDD+  AH+  E G   L KY+  +S NR +I+K+F +L+ FI+LFL
Sbjct:  204 GPDAAAGMRRRPFMN-GATGSSYAQQQQQQNLMRHRTAQSRLNDAQNVEAMIGEIGGMYSRMTGLLANQEEMLGRIEDDMTTAHSNVEGGYEELMKYFSTVSSNRSLILKIFLVLLVFIYLFL 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8869.16759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KU27_9PHAE1.120e-6947.38t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835ZFW2_9STRA2.800e-2570.83t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2XXW7_9STRA3.960e-1645.83Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y6L6_AURAN6.340e-1547.78t-SNARE coiled-coil homology domain-containing pro... [more]
I2CQ48_NANGC6.480e-1549.44t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S3H3X9_9STRA3.090e-1450.00Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UDN8_9STRA1.680e-1346.59Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A4D9CWV4_9STRA3.050e-1248.31t-SNARE coiled-coil homology domain-containing pro... [more]
C5LX88_PERM57.460e-1244.74Syntaxin 5, putative n=1 Tax=Perkinsus marinus (st... [more]
A0A485LIS1_9STRA1.240e-1139.84Aste57867_21905 protein n=1 Tax=Aphanomyces stella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8869contigH-paniculata_contig8869:1334..6335 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score204.5
Seed ortholog evalue7.6e-50
Seed eggNOG ortholog2880.D8LR19
Preferred nameSTX5
KEGG koko:K08490
KEGG Pathwayko04130,map04130
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000149,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0001505,GO:0002164,GO:0002376,GO:0002520,GO:0002790,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006836,GO:0006873,GO:0006875,GO:0006878,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006900,GO:0006901,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007283,GO:0007346,GO:0008104,GO:0008150,GO:0008283,GO:0008361,GO:0009306,GO:0009653,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010256,GO:0010604,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016081,GO:0016192,GO:0016197,GO:0016482,GO:0017156,GO:0019222,GO:0019725,GO:0019953,GO:0022402,GO:0022406,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0023061,GO:0030003,GO:0030097,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0033116,GO:0033206,GO:0034498,GO:0034613,GO:0035166,GO:0035167,GO:0042147,GO:0042175,GO:0042176,GO:0042592,GO:0042802,GO:0042803,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045055,GO:0045184,GO:0045732,GO:0045786,GO:0045930,GO:0046903,GO:0046907,GO:0046916,GO:0046983,GO:0047485,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048278,GO:0048280,GO:0048284,GO:0048285,GO:0048308,GO:0048313,GO:0048489,GO:0048513,GO:0048518,GO:0048519,GO:0048523,GO:0048534,GO:0048542,GO:0048569,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0051128,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051726,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055082,GO:0060255,GO:0060305,GO:0061024,GO:0061025,GO:0061640,GO:0065003,GO:0065007,GO:0065008,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090066,GO:0090114,GO:0090166,GO:0090174,GO:0097479,GO:0097480,GO:0097708,GO:0098588,GO:0098771,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:0098916,GO:0099003,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0140013,GO:0140029,GO:0140056,GO:1903008,GO:1903046,GO:1903047,GO:1903358
EggNOG free text desc.vesicle docking
EggNOG OGsKOG0812@1,KOG0812@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons5
Model size2100
Cds size1008
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.5464342-UTR-H-paniculata_contig8869:1333..14771622931109.5464342-UTR-H-paniculata_contig8869:1333..1477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 1334..1477 +
1691481594.4851294-UTR-H-paniculata_contig8869:1333..14771691481594.4851294-UTR-H-paniculata_contig8869:1333..1477Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 1334..1477 +
1622931109.5596013-UTR-H-paniculata_contig8869:2399..24501622931109.5596013-UTR-H-paniculata_contig8869:2399..2450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 2400..2450 +
1691481594.4985466-UTR-H-paniculata_contig8869:2399..24501691481594.4985466-UTR-H-paniculata_contig8869:2399..2450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 2400..2450 +
1622931109.625018-UTR-H-paniculata_contig8869:5438..63351622931109.625018-UTR-H-paniculata_contig8869:5438..6335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 5439..6335 +
1691481594.5430424-UTR-H-paniculata_contig8869:5438..63351691481594.5430424-UTR-H-paniculata_contig8869:5438..6335Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8869 5439..6335 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931109.5754828-CDS-H-paniculata_contig8869:2450..31141622931109.5754828-CDS-H-paniculata_contig8869:2450..3114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 2451..3114 +
1691481594.5087912-CDS-H-paniculata_contig8869:2450..31141691481594.5087912-CDS-H-paniculata_contig8869:2450..3114Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 2451..3114 +
1622931109.5894635-CDS-H-paniculata_contig8869:3537..36381622931109.5894635-CDS-H-paniculata_contig8869:3537..3638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 3538..3638 +
1691481594.516853-CDS-H-paniculata_contig8869:3537..36381691481594.516853-CDS-H-paniculata_contig8869:3537..3638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 3538..3638 +
1622931109.6007555-CDS-H-paniculata_contig8869:4210..43561622931109.6007555-CDS-H-paniculata_contig8869:4210..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 4211..4356 +
1691481594.5275574-CDS-H-paniculata_contig8869:4210..43561691481594.5275574-CDS-H-paniculata_contig8869:4210..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 4211..4356 +
1622931109.6137807-CDS-H-paniculata_contig8869:5341..54381622931109.6137807-CDS-H-paniculata_contig8869:5341..5438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 5342..5438 +
1691481594.5352108-CDS-H-paniculata_contig8869:5341..54381691481594.5352108-CDS-H-paniculata_contig8869:5341..5438Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8869 5342..5438 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8869.16759.1prot_H-paniculata_contig8869.16759.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8869 2451..5438 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8869.16759.1

>prot_H-paniculata_contig8869.16759.1 ID=prot_H-paniculata_contig8869.16759.1|Name=mRNA_H-paniculata_contig8869.16759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=336bp
MAPAAKLDYPLFGNPGGNNKNGLRDRAAARRRASPSPPPPPPPRPPPLST
SPPYDVPPVGNDSGAPASRPSLRAESSAAAGGGGQRSPSYPASAAGLEAA
KAVAGGGYSRGASPQGAAAAPWLAGSSNSGGGGGRGSVGVNNAFSGGGGG
PSGAFGDNGSSGSRGLRGGVGGGTHGALSYSSSSSPYGGAGGDPGGWGVP
LPPSEPFRAGAAGAYGLRKRPVGGEGDDGEEEARRAAWQVQVQEESKSRV
EESHKVEKMIGELGQMFSRFSTMVAAQEEVVLHIEDDVEAAHAFAEEGQA
HLAKYYQVMSGNRGIIIKVFALLIFFIWLFLGLMR*
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mRNA from alignment at H-paniculata_contig8869:1334..6335+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8869.16759.1 ID=mRNA_H-paniculata_contig8869.16759.1|Name=mRNA_H-paniculata_contig8869.16759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5002bp|location=Sequence derived from alignment at H-paniculata_contig8869:1334..6335+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTATGCAAGCGGAGAGAGTGGGGGGAGCCCGCCGAAGAATAGCCAGCG
ACAGGTGCACTGCCAGCACATCGTGGATACCCTGAAACACAGCTTTCAGG
AGCACACCAAGGCCTTCAGAGACGCGCTTCTTCTGAGAGCGGAGGTGGGA
AACGGGTGGATATATATGTCATGTATAAGTGCATCACGACATCTGTGTGG
TTCGGGGATCTTGAGCCTGTTCACACCCATTTTCAGTTATTCCAAGGTCG
GCCGTAATTGATCGACATATATGGCAGACCTTGGTATTGGGTGATGTAAT
GATGGTGAAGAATGCACGGCAGCCATTTATGGAGTATCGAGGAGAGCGCT
AGCGTTCGTGTTCCACGAGGGTGTTTCGATATTCGGAAAGAAATGCCTTC
CGGGAAGAGCTATGACCCCTGTCATTAATTTGGTCGTCATTCATTCTCAA
TAATTTCATGTTTGGAAGGCATCTGTCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCTATCGACCAAATGGTTA
GCCATGACCATCCCTGATCGTACCGCAGTCGCACGTCTCAGCGCTTTTTG
ATTGGGTTATCTTGTAATGTTCTCAATGAAGGCGCGACTTGACGAAAGTG
AGCGTTGGCGTTGCACGTATTTTTTTTACCCATTTTTTTGTTTGTCCCAA
CGAGGAGCCATTTTTTTTACCCCAATTGTTTTGCGCCATTTTTGGGGGGG
GGGTTTCACGTACATGCGCACATAAAACTAGCGCTCTCTATGGGTTTATG
CTGCGTTATCGCGTTCGAGCACTTCCGCGTTTCACTCTTTGTTGTTGGTT
TTCTTTAATCTAGTAGAGCTTTATAGTCGCGTGTGCATTAAAAAAAAAAA
TCCCAAGAACAAATTAAAGACCTGATGAAAATGAACATACATACATACGT
ACGTACGTACGTACCATCCTGTTCTTGTTTTCATCTAACGTGAGTCCGAG
TGTTGGTGTTTTCATCTAACGTGGTTCATTGATGGACTGAATGGTCTCAT
TTTATGACTAAAACAGGCGGAAAAGCAGCAAAACGAGCGCCAGCTCAAAT
TCTCACACTCCCAATACATGGCCCCCGCAGCCAAGCTCGACTACCCCCTC
TTCGGCAACCCCGGTGGCAACAATAAAAACGGACTCCGAGACCGCGCCGC
CGCGCGACGCCGCGCCTCTCCCTCTCCCCCGCCCCCCCCCCCCCCCCGAC
CACCACCTCTATCGACATCCCCGCCATACGACGTACCGCCCGTCGGCAAT
GATTCAGGCGCGCCGGCATCGAGGCCCTCGTTGCGTGCCGAATCATCCGC
TGCTGCTGGGGGGGGTGGGCAACGATCTCCGTCATATCCAGCCAGCGCGG
CAGGGCTGGAAGCCGCGAAGGCGGTAGCGGGGGGGGGATATAGCCGGGGC
GCGAGTCCTCAAGGAGCTGCGGCAGCTCCGTGGTTAGCAGGAAGTAGTAA
TAGTGGCGGTGGCGGTGGTAGAGGTAGCGTAGGGGTTAACAACGCATTCT
CGGGAGGAGGTGGTGGGCCTTCTGGAGCTTTCGGGGATAATGGTTCGTCC
GGATCGAGAGGGTTGAGAGGGGGCGTGGGCGGTGGTACACATGGAGCATT
GTCATATTCATCGTCATCATCGCCATATGGTGGCGCCGGTGGAGATCCAG
GAGGTTGGGGGGTCCCGCTGCCTCCTAGCGAGCCGTTTCGAGCGGGTGCT
GCTGGGGCTTACGGCCTGCGAAAGCGCCCAGGTTAATATTTTTGTTGAGT
TTGGAGCGGGCCAGGGATACTTTTTTTCTTTTATAGTCGTTTTCGCTATT
GTGTCATTTATCCGATTTGTCTAAGAGAGATAGGATGATATTAATCAGGT
GGCTAGAGTAAATCTGACGGGCGTGTCCAGAAATACTACATGGTGTTATG
GGATGGTTTTGTAGAACCGATTTGTTCCCGCTGCTAGAGTAGTAGAAAGC
CGTTGGGAAGGGTAGGCTTGAGATGGGGAGCGCGAACGAGAGAAGGGTAG
CCGTGCGTAGCCCCCCGGGGGGAGAGCAGTACACATAAAAGGATGGCTGC
GTGGACTTCGTGTCGGGTGTGTGGCGGGGCTGGCCCCCGATATTCTTGCC
ATTATTGCGTTAAGGTATACATTTTCTGCGCGTTCACGTGTACCTTTTCT
GCAGTTGGTGGGGAGGGTGACGATGGCGAAGAGGAGGCCAGGCGAGCCGC
GTGGCAGGTGCAGGTACAGGAGGAGTCCAAAAGCCGAGTGGAGGAATCGC
ACAAGGTAAAGAAAGGTTTGACCCTTATATAGTGCCGGTGGGGGATACTG
TGGTCCATGCAATGATTGAAAACCTATATATACATTATGTATCTATGCGA
TAGCTCCTGTAGTATTGTAACTATTTTCGTTGAGTGGTGCGCTGGGGGGG
TTATTTCCGCGTGAATCAAAAGCAAATGTTGAGTGTAGCAAAGAATAGGA
CAGGAAATATGTGAAAAAAAACAAAACAAACTTGACCGGTGGATAGATTT
GGTTGTTTATTATATCTTGCTTGCTACTAGGCTAGCGAGGCATTGCTTGC
TGTCGTACTGCGTATGTATTTTTTTACTTGATGTTATCATATTTTCTTCT
GAACGCCCCCTAAAACAAATCCAGCAAGTCTCCGCTGCTATGGGAATGGT
ATTTTATGCAATAATAAGCCGTGCATACACAACCGCAAACTTTTTTTTTT
TTCGGAGATTCTCTTTTTTTTTTTTCGGAGATTTTTTTTTTTTTCTTTGG
TCCTCATTTTCCTTTTTTTTCCTCTCTCTTGCTATTTCTGGTCTCTCTAT
CTTGACTTTGATTGTTGTCGATCACAGGTGGAAAAGATGATAGGTGAATT
GGGACAAATGTTTAGCCGATTTTCCACTATGGTGGCGGCCCAGGAAGAGG
TGGTGCTGCACATCGAAGATGATGTAGAGGCGGCCCACGCATTCGCCGAA
GAGGGTCAAGCACATCTCGCCAAGTGAGTTAATCTCAAATAGCGTGTATT
TTGTACAGAGCTGACTAGGTAATTCGTATTTTTCATGTTTTTGTGCCGCC
GCAGTGTGAATTTCTGCTCACCGAGCTCATCCTCTATGCAGGCGAGCTTT
CGCAAACCGGGTCAGCAGCATTTTCGTTCTGGAACTCTATGTCATCAAAA
ACTGTCGGCATTAAGCGCTGGCAGCTGAACCGGGATATACAAGTCAACAT
AGTGTTCACTGGTTGTCGTTGAGTCGATGGACAGACATGAAGGATGGGAA
TCTTTGAGGTCGTCTTTGATTTTTTCATGGCAAACCCCCAAGTACTGTTA
ATCCATATTATTTCTCGCCGGCAATGGCGAACCGCAGCAAAAGCTGAAAG
ACACACATGGAAAAGAGCTCGTGGGAGAAAGGACCGCGCAATGCGTTCGT
TTGAGATCTGTAACTGTCCACGGTTGCCTCCTGTTTCGTTATTTGACAAT
CGTACCCCCACCCACTGTTCCTTCCCGTGTCTCGGTCCTTTGAGGTACTT
TTGTGGTGGTTCTCACGGTTCCGCCAGACGTGAACAGTTGTGTATACTCG
TCAGTAAGGTTGGATCAATCAAGGGGTGTAGTTGTTTTAACGGATAATGA
CAAAAGGTTAACATGGAAAATCAATACAAACACATCATCACCCCGGCCCC
GTTGAATATATATTGATACAGATGATAAGCTCTCAAATCTTTTGCTTATG
GTAGTTGACAGCGTAAAGAAGTTTTACGCTACTAGACGTTTATGTATGTA
GTCCATAATGACGCCAAGAAATAGTTGTGAGCAATATACAAAAGCAAGAG
AAGTGATCGAACAGGCTTTCGTCCACACAGGATGTGTCCATCAGAAATGT
TTTCAAGAGATACCAAGTCAGTCCATGGTGCGCCGCTTACATTTTTTTTT
TTTTTTTTTTCGCCTGTTGTGACCTCTTTTCCCTCTCTTTTTTTCCTTGG
CGTGGTAGGTATTACCAGGTGATGAGCGGCAATCGCGGCATCATCATCAA
GGTGTTCGCCTTGCTCATCTTCTTCATATGGCTGTTCCTCGGCCTTATGC
GGTGATGATGACAGACGGACGTATTACGGTCGAGTGACAACATGCACCTT
CCAGTGGATTGTCAGGGACACTCTGAAGTCTTATCTGTACACATACGCTC
CGCACTGTTGTACACAGTCAGTAGTTAATCTTAATATCTAAACCCTCACT
AGAAACACGAAAGGCACTTCTTGTTTTGAGTTTTGTCCAGGTGCGGTAGG
TAGTAAGTAGGTGGGTACCCTGTCCCCATCATTTGAGAATGTAAACTGTC
CGTGATTGCCCTGTTTGCAGTACGTCCCCCGGGAGTTTGAGATTTGGTTG
CTTGGGGAACGATGAAACGAGGCATTGACGCCGTGCTTCTCGTATACTGG
GCGTTGCTGGTGCATATTAAAACTGTAACGGTGGGTCGTGTTTTTCTCGA
ACAATAGAGTTATTTGTCATTGTGTACAGGACGTGTTGTACTGCGCCGGT
TTGGCTGCCTGGAGTGGCCACTGCTGCATGGTGCCATGTAGTTGAGACAC
GAGGAAGTGGTTCCGCCGGGTATAACGAACAAAAAAAGTCGCTTGGCTTG
TGAACTCGTGACACGGGTTATTATCCAGTGGCGACCTAGTGTACACGTCG
GATGGTCTACTGACGACATGTATACTCGCAAGTAGAGCTGCCACGACGAA
TAAAGTGTAAAACTCTGGGTGATGATGATGGCAGCAGTGAGAAGTAGAGT
AGGAAAGCTAGTCGAGATCGTTCTCCGGAACTGTCTTGAGAGAAACAGGT
CTGTTTTTCTAAAAGAATATTCAACTCTACTGGGCGCGTGGCTCTTGCCT
CATCTCGCGGATAGTTGTATGAGATAACTTGATAAACCGACCACAGTCTG
ACGTGGTAAGGTAAACTCTGGATTACGATAAATGCTGCAATTAAGCTAAT
CC
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Coding sequence (CDS) from alignment at H-paniculata_contig8869:1334..6335+

>mRNA_H-paniculata_contig8869.16759.1 ID=mRNA_H-paniculata_contig8869.16759.1|Name=mRNA_H-paniculata_contig8869.16759.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2016bp|location=Sequence derived from alignment at H-paniculata_contig8869:1334..6335+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCCCCGCAGCCAAGCTCGACTACCCCCTCTTCGGCAACCCCGGTGG
CAACAATAAAAACGGACTCCGAGACCGCGCCGCCGCGCGACGCCGCGCCT
CTCCCTCTCCCCCGCCCCCCCCCCCCCCCCGACCACCACCTCTATCGACA
TCCCCGCCATACGACGTACCGCCCGTCGGCAATGATTCAGGCGCGCCGGC
ATCGAGGCCCTCGTTGCGTGCCGAATCATCCGCTGCTGCTGGGGGGGGTG
GGCAACGATCTCCGTCATATCCAGCCAGCGCGGCAGGGCTGGAAGCCGCG
AAGGCGGTAGCGGGGGGGGGATATAGCCGGGGCGCGAGTCCTCAAGGAGC
TGCGGCAGCTCCGTGGTTAGCAGGAAGTAGTAATAGTGGCGGTGGCGGTG
GTAGAGGTAGCGTAGGGGTTAACAACGCATTCTCGGGAGGAGGTGGTGGG
CCTTCTGGAGCTTTCGGGGATAATGGTTCGTCCGGATCGAGAGGGTTGAG
AGGGGGCGTGGGCGGTGGTACACATGGAGCATTGTCATATTCATCGTCAT
CATCGCCATATGGTGGCGCCGGTGGAGATCCAGGAGGTTGGGGGGTCCCG
CTGCCTCCTAGCGAGCCGTTTCGAGCGGGTGCTGCTGGGGCTTACGGCCT
GCGAAAGCGCCCAGATGGCCCCCGCAGCCAAGCTCGACTACCCCCTCTTC
GGCAACCCCGGTGGCAACAATAAAAACGGACTCCGAGACCGCGCCGCCGC
GCGACGCCGCGCCTCTCCCTCTCCCCCGCCCCCCCCCCCCCCCCGACCAC
CACCTCTATCGACATCCCCGCCATACGACGTACCGCCCGTCGGCAATGAT
TCAGGCGCGCCGGCATCGAGGCCCTCGTTGCGTGCCGAATCATCCGCTGC
TGCTGGGGGGGGTGGGCAACGATCTCCGTCATATCCAGCCAGCGCGGCAG
GGCTGGAAGCCGCGAAGGCGGTAGCGGGGGGGGGATATAGCCGGGGCGCG
AGTCCTCAAGGAGCTGCGGCAGCTCCGTGGTTAGCAGGAAGTAGTAATAG
TGGCGGTGGCGGTGGTAGAGGTAGCGTAGGGGTTAACAACGCATTCTCGG
GAGGAGGTGGTGGGCCTTCTGGAGCTTTCGGGGATAATGGTTCGTCCGGA
TCGAGAGGGTTGAGAGGGGGCGTGGGCGGTGGTACACATGGAGCATTGTC
ATATTCATCGTCATCATCGCCATATGGTGGCGCCGGTGGAGATCCAGGAG
GTTGGGGGGTCCCGCTGCCTCCTAGCGAGCCGTTTCGAGCGGGTGCTGCT
GGGGCTTACGGCCTGCGAAAGCGCCCAGTTGGTGGGGAGGGTGACGATGG
CGAAGAGGAGGCCAGGCGAGCCGCGTGGCAGGTGCAGGTACAGGAGGAGT
CCAAAAGCCGAGTGGAGGAATCGCACAAGTTGGTGGGGAGGGTGACGATG
GCGAAGAGGAGGCCAGGCGAGCCGCGTGGCAGGTGCAGGTACAGGAGGAG
TCCAAAAGCCGAGTGGAGGAATCGCACAAGGTGGAAAAGATGATAGGTGA
ATTGGGACAAATGTTTAGCCGATTTTCCACTATGGTGGCGGCCCAGGAAG
AGGTGGTGCTGCACATCGAAGATGATGTAGAGGCGGCCCACGCATTCGCC
GAAGAGGGTCAAGCACATCTCGCCAAGTGGAAAAGATGATAGGTGAATTG
GGACAAATGTTTAGCCGATTTTCCACTATGGTGGCGGCCCAGGAAGAGGT
GGTGCTGCACATCGAAGATGATGTAGAGGCGGCCCACGCATTCGCCGAAG
AGGGTCAAGCACATCTCGCCAAGTATTACCAGGTGATGAGCGGCAATCGC
GGCATCATCATCAAGGTGTTCGCCTTGCTCATCTTCTTCATATGGCTGTT
CCTCGGCCTTATGCGGTGAGTATTACCAGGTGATGAGCGGCAATCGCGGC
ATCATCATCAAGGTGTTCGCCTTGCTCATCTTCTTCATATGGCTGTTCCT
CGGCCTTATGCGGTGA
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