prot_H-paniculata_contig87.16636.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig87.16636.1
Unique Nameprot_H-paniculata_contig87.16636.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length141
Homology
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BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Match: D8LJB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.060e-13
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 0 
Query:   20 PCWESGLSCPTLQAGVDPTEAAQAAVATVTEAVCARDGLPSTDTVGLVDSVFTLVQLALDDR----CKERTKQTDVSP-GESAFRSALLPGALGLVTRLTTALQ 118
            PCW  GL+CP+L+ G+DP + A+  V+    +V +  G     +V  VD VF LVQL LDDR           T  SP  E AFRSAL PGALGLV +L  ALQ
Sbjct:    8 PCWADGLACPSLR-GLDPAKLARDLVSRSAASVASAGGKGGGVSVATVDEVFALVQLGLDDRQPTPAAAEAGITHNSPEAEKAFRSALAPGALGLVPKLAAALQ 110
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BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Match: A0A6H5JIM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-8
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:   25 GLSCPTLQAGVDPTEAAQAAVATVTEAVCARDGLPSTDTVGLVDSVFTLVQLALDDR----CKERTKQTDVSP-GESAFRSALLPGALGLVTRLTTALQPCER 122
            GL+CP+L+ G+DP + A+  V+    +V +        +V  VD VF L+QL LDDR           T+ SP  E+AFRSAL PGALGLV +L  ALQ  +R
Sbjct:    8 GLACPSLR-GLDPAKLARDLVSRSAASVASAGVKGGGISVATVDEVFALIQLGLDDRQPTPATVEAGITNNSPEAETAFRSALAPGALGLVPKLAAALQHRDR 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJB2_ECTSI7.060e-1347.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIM5_9PHAE1.370e-843.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 18..141
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.492

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig87contigH-paniculata_contig87:32943..35679 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig87.16636.1mRNA_H-paniculata_contig87.16636.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig87 32941..35679 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig87.16636.1 ID=prot_H-paniculata_contig87.16636.1|Name=mRNA_H-paniculata_contig87.16636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
SSLCTCAISLGMAALQAGPPCWESGLSCPTLQAGVDPTEAAQAAVATVTE
AVCARDGLPSTDTVGLVDSVFTLVQLALDDRCKERTKQTDVSPGESAFRS
ALLPGALGLVTRLTTALQPCERKTGDKKRTGETTLEEDKEE
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