mRNA_H-paniculata_contig87.16636.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig87.16636.1
Unique NamemRNA_H-paniculata_contig87.16636.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Match: D8LJB2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.060e-13
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:   58 PCWESGLSCPTLQAGVDPTEAAQAAVATVTEAVCARDGLPSTDTVGLVDSVFTLVQLALDDR----CKERTKQTDVSP-GESAFRSALLPGALGLVTRLTTALQ 354
            PCW  GL+CP+L+ G+DP + A+  V+    +V +  G     +V  VD VF LVQL LDDR           T  SP  E AFRSAL PGALGLV +L  ALQ
Sbjct:    8 PCWADGLACPSLR-GLDPAKLARDLVSRSAASVASAGGKGGGVSVATVDEVFALVQLGLDDRQPTPAAAEAGITHNSPEAEKAFRSALAPGALGLVPKLAAALQ 110
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BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Match: A0A6H5JIM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM5_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-8
Identity = 45/103 (43.69%), Postives = 60/103 (58.25%), Query Frame = 1 
Query:   73 GLSCPTLQAGVDPTEAAQAAVATVTEAVCARDGLPSTDTVGLVDSVFTLVQLALDDR----CKERTKQTDVSP-GESAFRSALLPGALGLVTRLTTALQPCER 366
            GL+CP+L+ G+DP + A+  V+    +V +        +V  VD VF L+QL LDDR           T+ SP  E+AFRSAL PGALGLV +L  ALQ  +R
Sbjct:    8 GLACPSLR-GLDPAKLARDLVSRSAASVASAGVKGGGISVATVDEVFALIQLGLDDRQPTPATVEAGITNNSPEAETAFRSALAPGALGLVPKLAAALQHRDR 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig87.16636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJB2_ECTSI7.060e-1347.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIM5_9PHAE1.370e-843.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig87contigH-paniculata_contig87:32941..35679 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size426
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig87.16636.1prot_H-paniculata_contig87.16636.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig87 32943..35679 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931092.1752665-CDS-H-paniculata_contig87:32942..330531622931092.1752665-CDS-H-paniculata_contig87:32942..33053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 32943..33053 -
1691481586.28882-CDS-H-paniculata_contig87:32942..330531691481586.28882-CDS-H-paniculata_contig87:32942..33053Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 32943..33053 -
1622931092.1959558-CDS-H-paniculata_contig87:34069..343331622931092.1959558-CDS-H-paniculata_contig87:34069..34333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 34070..34333 -
1691481586.3009882-CDS-H-paniculata_contig87:34069..343331691481586.3009882-CDS-H-paniculata_contig87:34069..34333Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 34070..34333 -
1622931092.2128618-CDS-H-paniculata_contig87:35631..356791622931092.2128618-CDS-H-paniculata_contig87:35631..35679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 35632..35679 -
1691481586.3103604-CDS-H-paniculata_contig87:35631..356791691481586.3103604-CDS-H-paniculata_contig87:35631..35679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig87 35632..35679 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig87.16636.1

>prot_H-paniculata_contig87.16636.1 ID=prot_H-paniculata_contig87.16636.1|Name=mRNA_H-paniculata_contig87.16636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
SSLCTCAISLGMAALQAGPPCWESGLSCPTLQAGVDPTEAAQAAVATVTE
AVCARDGLPSTDTVGLVDSVFTLVQLALDDRCKERTKQTDVSPGESAFRS
ALLPGALGLVTRLTTALQPCERKTGDKKRTGETTLEEDKEE
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mRNA from alignment at H-paniculata_contig87:32941..35679-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig87.16636.1 ID=mRNA_H-paniculata_contig87.16636.1|Name=mRNA_H-paniculata_contig87.16636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2739bp|location=Sequence derived from alignment at H-paniculata_contig87:32941..35679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCGTTGTGCACGTGTGCGATATCTCTTGGGATGGCGGCGCTGCAGGT
GATGGTACAGGGCGTGTGCATGCTGTAGGAAGGTTTGTTCTCTTGAAATC
TCGAAATTATCACCTACCTACACGTGCACTGACTGTCTGTGCGTCATTGG
TATGTGTACTAGTGACTTCTTTTTCAAACACTTACCGTCTGTTTCTCGTA
CTATTTGATTGGGAAGGCCATAGCTGTTTGTCGTCGACTGCAGGCATCAT
TGAATTGAGCAACCGAAGTTCGGTGAGTTGTGTTTATAGTAGACGGGCTT
ATATTTCACTCCTTTGCATATTATCAGTTTCTCTGCTCCGCAAGAAATTT
GAATTTCGAGTTATCATATTTTTCATTTTTAAGAATTTGAATTTGTTTGT
AGAGGACGGCACATGAACCTGTGTGTGATTGTGTTAGTAAGAGTTGGGCG
ATCCGTTGGTGAAGAGGAAGTCGTCGTGGAACTTCACTAGAGGTTGCCAA
ACATAAAGCAGCTCATGGTGATGACACATGCTACTATGCGCTATAGATAT
AGGCTCGCTACCTTCGTTGAACTTTACAGTATAATGCGGGTACACCAGTG
CAGCCAATTTTTACGTTCCCGATCACCCACTCTACAGAAAAAAATCCTCA
TGCTCCACCAGATGTCGGACAGCTTATGAAACCTGCTTGCACACTGCCTC
AACCCTGCAAAGTCGATGCTGTGCTGATTGTTGACTGGCTGTTCTGTTTG
TTGACTGACTGCTGATGCATTTATAACAAAATGTAAGGAGTGAGTACGAA
AGCACTACTTGGCTCAACTGGATTCAATCACCGATGCGGCATGATGTAGA
CTCGAACGCCTGTCGGCTTATTCCCATGGCTAATAGGTAGGCCGTGGCCA
CGCTAGTCGCATACCCGTGCACATTACTGTTCCGTGTCACGTGGCACTGC
GAATCCCCCTCCCCTAAAAAAAACCCCGCTTGAATAGAAAAATGGAAACT
GTTCCGAGAACAACGTCATCATCATCATCATTATCATCGTCGTTAGCATT
TCAAGTATTAAGGATATGCATCACCATCCCACGAACGGTAGTAGTAGACC
CTACATACGCAAAAGACGCATCGTCTTTTCGCCACTTTTTTTTGTGTCCT
ACACCATTCACCCATGTACAGACAAGTGGTATTGTCTCCACTGACTAACT
GGTCTATCCCTTGACTCTCTCACTGCACCACCCAACCTCTTTTACAGCAC
CAATCCTTCACCCTGCCGAAAAGCCCTTCTCAATCTTGCACTTCTCACCT
ATCGTGTCCATCAGTAAACACTTTTTCGCGATCTAAAATACCCCAGGCGG
GTCCCCCTTGCTGGGAGAGCGGCCTTTCCTGCCCCACGCTACAAGCCGGG
GTCGACCCCACTGAGGCGGCGCAAGCGGCAGTTGCAACTGTCACTGAGGC
CGTGTGCGCGCGCGACGGTTTGCCCAGTACCGACACGGTCGGGTTAGTGG
ACAGCGTGTTTACTCTTGTCCAGCTTGCCCTTGATGACAGGTGTAAGGAG
AGGACGAAGCAGACGGATGTATCCCCGGGGGAGAGCGCGTTTCGGTCTGC
CCTACTGCCCGTGAGAATTTTACCTTCTTGGGTCGTACGAGTATTTTGGC
ATATTGTGGTACCTTGTTTTGCTCTCAACGCTGTTTGTCGAGTGCTAAAC
GTAGACAACAGTACAAGCTCTGGTCTTCGTCAACTGCTCGACAGCATGTT
TTGACCGTTGGTGCGAACAACTAGTTTCCAGGCGACGTCAAAATTAATTC
AGCTTGGTCAGGGTCTTGATAAGAAATGAGGTATCTGCGTCGTCGAGTTT
CAACAGACCGGGTACTGTTGATTTTCGGTCCGTCGTACTTATTGTGTTGT
TGTTCCTATCGAACAGAAATGTTTAGAGTGACTGATACGTGAAAGTAAGG
GACAATTGTACGACTGTGGCATGAAGGTAAGTGCAAACTGAGCACCCCAG
ATACTCATATTGTATTGCCATCATGTACCGAAATACCACCCCCCTGATAT
TATATCTTAAACTTGATTTTATCAACAATGTCGGTGCTCATGACATGGAT
GGCGGTATCGTTAGAAATATACCGTTGAGGTTTTTCGGTAGACATGCTGA
TTGTGAAGTACAGGCTCTTGTTTTTCGAGAAAACTGGGTTTGGAAAATAA
TGTCAGGGGGTGCGATATCAAAGGGTGTTGCGGCATGCAGGTATCCCTGT
GCCAGCACCGCTCAATTTTTTTATTATTCGATTTCTTTTTCTGATGTTCT
TGTTTTGCTTGACGCTTTCTTGTTAATGATAACGACGGTCGAGCTTCTCG
TGCGTGATGTCGATGGCCGAGGTTTCAGTATGGCATTTGCTTGAAGTCAC
TACACGCACAGCGGAGCTTTTCGCTGGGTATGAGTACTCTTATCAGCCGC
TCGTTCGTCAGTCCCTGAAGATCGATCTGTCGGTTGACGCGGAGTAAGGC
CAGATGCCTCCATCACCGTACTGCAGCTCTCGTCGCAACGACAACCAACA
TGCGTCAACCGCCACTCCCCCTTCCCCCCCCCTCAAAACATCGTGCGCCC
TGCCTATGTGTTCATCCTTGTACCAGGGAGCGCTGGGTCTGGTGACGCGT
TTGACGACAGCGTTGCAACCTTGCGAGAGAAAAACTGGAGATAAAAAACG
CACAGGCGAGACTACCCTGGAGGAGGACAAGGAGGAGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig87:32941..35679-

>mRNA_H-paniculata_contig87.16636.1 ID=mRNA_H-paniculata_contig87.16636.1|Name=mRNA_H-paniculata_contig87.16636.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig87:32941..35679- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCGTTGTGCACGTGTGCGATATCTCTTGGGATGGCGGCGCTGCAGTC
TTCGTTGTGCACGTGTGCGATATCTCTTGGGATGGCGGCGCTGCAGGCGG
GTCCCCCTTGCTGGGAGAGCGGCCTTTCCTGCCCCACGCTACAAGCCGGG
GTCGACCCCACTGAGGCGGCGCAAGCGGCAGTTGCAACTGTCACTGAGGC
CGTGTGCGCGCGCGACGGTTTGCCCAGTACCGACACGGTCGGGTTAGTGG
ACAGCGTGTTTACTCTTGTCCAGCTTGCCCTTGATGACAGGTGTAAGGAG
AGGACGAAGCAGACGGATGTATCCCCGGGGGAGAGCGCGTTTCGGTCTGC
CCTACTGCCCGCGGGTCCCCCTTGCTGGGAGAGCGGCCTTTCCTGCCCCA
CGCTACAAGCCGGGGTCGACCCCACTGAGGCGGCGCAAGCGGCAGTTGCA
ACTGTCACTGAGGCCGTGTGCGCGCGCGACGGTTTGCCCAGTACCGACAC
GGTCGGGTTAGTGGACAGCGTGTTTACTCTTGTCCAGCTTGCCCTTGATG
ACAGGTGTAAGGAGAGGACGAAGCAGACGGATGTATCCCCGGGGGAGAGC
GCGTTTCGGTCTGCCCTACTGCCCGGAGCGCTGGGTCTGGTGACGCGTTT
GACGACAGCGTTGCAACCTTGCGAGAGAAAAACTGGAGATAAAAAACGCA
CAGGCGAGACTACCCTGGAGGAGGACAAGGAGGAGGGAGCGCTGGGTCTG
GTGACGCGTTTGACGACAGCGTTGCAACCTTGCGAGAGAAAAACTGGAGA
TAAAAAACGCACAGGCGAGACTACCCTGGAGGAGGACAAGGAGGAG
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