prot_H-paniculata_contig8609.16570.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8609.16570.1
Unique Nameprot_H-paniculata_contig8609.16570.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length94
Homology
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: A0A6H5L9E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E4_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.290e-32
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 0
Query:    1 MQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 93
            MQTYN S +Y+    LVGSV+A  TPE+ + +F+AGV+Y CNPKT VRAKVNS G+V ACAVN+CADKV+V VT   +K DT P+ G++C LG
Sbjct:  152 MQTYNASGFYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKVNSNGLVQACAVNRCADKVAVTVTAAAAKNDTTPKFGLLCALG 244          
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: D8LG27_ECTSI (Voltage dependent anion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG27_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.680e-31
Identity = 54/93 (58.06%), Postives = 71/93 (76.34%), Query Frame = 0
Query:    1 MQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 93
            MQT+N S YY+    LVGSV+A  TPE+ + +F+AGV+Y CNPKT VRAK+NS G+V ACAVN+CADKV++ VT   +K DT P+ G++C LG
Sbjct:  228 MQTFNASGYYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKMNSNGLVQACAVNRCADKVAITVTAAAAKNDTTPKFGLLCALG 320          
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: A0A835YRG3_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG3_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.140e-17
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 0
Query:    1 MQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 93
            M TYN+S+ Y     L  +VLAS TPE    T   G+KY CNP TV+RAK+ S G+V A   NKC + VSV V  +++  D  P+ G  CTLG
Sbjct:  182 MATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L9E4_9PHAE1.290e-3260.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG27_ECTSI2.680e-3158.06Voltage dependent anion channel n=1 Tax=Ectocarpus... [more]
A0A835YRG3_9STRA1.140e-1747.31Voltage dependent anion channel n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023614Porin domain superfamilyGENE3D2.40.160.10coord: 1..92
e-value: 2.6E-11
score: 45.2
IPR027246Eukaryotic porin/Tom40PFAMPF01459Porin_3coord: 2..87
e-value: 1.7E-9
score: 37.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8609contigH-paniculata_contig8609:7567..8489 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8609.16570.1mRNA_H-paniculata_contig8609.16570.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8609 4805..9844 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8609.16570.1 ID=prot_H-paniculata_contig8609.16570.1|Name=mRNA_H-paniculata_contig8609.16570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAK
VNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023614Porin_dom_sf
IPR027246Porin_Euk/Tom40