mRNA_H-paniculata_contig8609.16570.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: D8LG27_ECTSI (Voltage dependent anion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG27_ECTSI) HSP 1 Score: 268 bits (685), Expect = 1.800e-80 Identity = 139/257 (54.09%), Postives = 188/257 (73.15%), Query Frame = 1
Query: 1 IINDDYHLKRTLKVKHTTPHGLSVTTKNEHKKTVSAAIEAKYFAPQAQISIDKLSLFTDGSLGLEASRV-VSKELTLSTKVGDALKGEVTADYVNKGVASKVTVDTEGSWAKASTSVTSSGFRLGGSVDSSLNG--KTSSVQAYSVGAATGGARWGASLTCINKMQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 762
I++DDY+LKRTLK+KHTTPHG++VT K+EH K V+ A+EAK+F ++ +SIDK L DGS+GLEASR V+K + L KV D LKGEV+ ++ +S+ T+D EG+W + ST + L G+ + G K S++++YSVGAATGG+RWGASLTC N MQT+N S YY+ LVGSV+A TPE+ + +F+AGV+Y CNPKT VRAK+NS G+V ACAVN+CADKV++ VT +K DT P+ G++C LG
Sbjct: 64 ILSDDYNLKRTLKMKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDVAKNVKLVAKVNDVLKGEVSMEHTVGKSSSRATLDVEGNWMRTSTCMAVGSSLLVGAQGDFIVGAPKDSALKSYSVGAATGGSRWGASLTCTNAMQTFNASGYYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKMNSNGLVQACAVNRCADKVAITVTAAAAKNDTTPKFGLLCALG 320
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: A0A6H5L9E4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9E4_9PHAE) HSP 1 Score: 247 bits (631), Expect = 1.310e-73 Identity = 129/244 (52.87%), Postives = 175/244 (71.72%), Query Frame = 1
Query: 40 VKHTTPHGLSVTTKNEHKKTVSAAIEAKYFAPQAQISIDKLSLFTDGSLGLEASRV-VSKELTLSTKVGDALKGEVTADYVNKGVASKVTVDTEGSWAKASTSVTSSGFRLGGSVDSSLNG--KTSSVQAYSVGAATGGARWGASLTCINKMQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 762
+KHTTPHG++VT K+EH K V+ A+EAK+F ++ +SIDK L DGS+GLEASR ++K + L KV D LKGEV+ ++ +++ T+D EG+W + ST + L G+ + G K S++++YSVGAATGG+RWGASLTC N MQTYN S +Y+ LVGSV+A TPE+ + +F+AGV+Y CNPKT VRAKVNS G+V ACAVN+CADKV+V VT +K DT P+ G++C LG
Sbjct: 1 MKHTTPHGVTVTAKSEHSKGVNGALEAKFFHAKSGVSIDKAKLNPDGSMGLEASRRDIAKNVKLVAKVNDVLKGEVSMEHTVGKSSTRATLDVEGNWMRTSTCMAVGSSLLVGAQGDFIVGAPKDSALKSYSVGAATGGSRWGASLTCTNAMQTYNASGFYILQPNLVGSVMAVTTPEKSETSFEAGVRYQCNPKTTVRAKVNSNGLVQACAVNRCADKVAVTVTAAAAKNDTTPKFGLLCALG 244
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: A0A835YRG3_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRG3_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.050e-46 Identity = 106/258 (41.09%), Postives = 151/258 (58.53%), Query Frame = 1
Query: 1 IINDDYHLKRTLKVKHTTPHGLSVTTKNEHKKT--VSAAIEAKYFAPQAQISIDKLSLFTDGSLGLEASRV-VSKELTLSTKVGDALKGEVTADYVNKGVASKVTVDTEGSWAKASTSVTSSGFRLGGSVDSSLNG-KTSSVQAYSVGAATGGARWGASLTCINKMQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 762
++ DDY LK TLK+KHTTPH ++ T +NEHK V+ ++ KY + S+DK+ L DG +E S V++ L L+ K+ DA+KG+V ++V +A K V+TE + +S + G GG V + L G K +++ Y+ G + GG W +LT NKM TYN+S+ Y L +VLAS TPE T G+KY CNP TV+RAK+ S G+V A NKC + VSV V +++ D P+ G CTLG
Sbjct: 17 LLTDDYSLKNTLKLKHTTPHAVAFTAENEHKGASGVAGKLQLKYAHKPSGFSLDKVVLGPDGGTSVECSLAGVAEGLKLTAKINDAIKGDVGTEFVGARMALKTEVNTELTKITSSATAAYDGVNAGGIVIAKLPGDKPAALSDYNAGLSYGGTGWFTALTTSNKMATYNVSASYAPAANLTTAVLASTTPESGAQTVTVGLKYQCNPATVLRAKMTSEGMVHAAMQNKCCEGVSVGVATEMNTKDMQPKFGFNCTLG 274
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: A0A835YZM2_9STRA (Voltage dependent anion channel n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZM2_9STRA) HSP 1 Score: 169 bits (427), Expect = 6.510e-44 Identity = 98/257 (38.13%), Postives = 145/257 (56.42%), Query Frame = 1
Query: 1 IINDDYHLKRTLKVKHTTPHGLSVTTKNEHK-KTVSAAIEAKYFAPQAQISIDKLSLFTDGSLGLEASRV-VSKELTLSTKVGDALKGEVTADYVNKGVASKVTVDTEGSWAKASTSVTSSGFRLGGSVDSSLNG-KTSSVQAYSVGAATGGARWGASLTCINKMQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKVNSAGVVSACAVNKCADKVSVAVTGQVSKADTAPQLGIMCTLG 762
++ DD+ LKRT+KVKHTTPH ++ T +NEHK V+ ++ KY + ++DK+++ +G+ +E S ++ L L+ KV DA+KG+V A+YV G A K +D E + S + G GG + + L G K +++ Y+ G A GG W +LT NKM TYNLS+ Y + VLAS TPE + G KY CNP T +RAK S G++ A +KC + + +V+ D P+ G CTLG
Sbjct: 17 LLTDDFSLKRTVKVKHTTPHNVNFTIENEHKGSAVAGKVQLKYAHKPSGFALDKVTIAQNGAKTVECSLAGLAPGLKLTAKVDDAIKGDVGAEYVGAGFAIKTDMDVEATKMVTSATAAYEGVNAGGIISAKLPGDKPAALSDYNAGVAYGGTGWFTALTTTNKMATYNLSATYAPAKNVTAVVLASLTPETGAQSVVVGTKYVCNPNTTLRAKATSDGMLHAAVQHKCTQGLIIGAATEVNAKDMQPKFGFNCTLG 273
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Match: W7U0F0_9STRA (Voltage-dependent anion-selective channel n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0F0_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 5.020e-7 Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1 IINDDYHLKRTLKVKHTTPHGLSVTTKNE-----HKKTVSAAIEAKYFAPQAQISIDKLSLFTDGSL 186
I+NDDY LKRTLKVKH TP G++VTT+NE K + A I KY S+DKL L G L
Sbjct: 19 ILNDDYSLKRTLKVKHVTPDGVAVTTENELTGKDGKFDLKAKISGKYKHAATGFSVDKLQLKETGGL 85 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8609.16570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8609.16570.1 >prot_H-paniculata_contig8609.16570.1 ID=prot_H-paniculata_contig8609.16570.1|Name=mRNA_H-paniculata_contig8609.16570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp MQTYNLSSYYLFNDKLVGSVLASCTPEQHQNTFQAGVKYTCNPKTVVRAKback to top mRNA from alignment at H-paniculata_contig8609:4805..9844+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8609.16570.1 ID=mRNA_H-paniculata_contig8609.16570.1|Name=mRNA_H-paniculata_contig8609.16570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5040bp|location=Sequence derived from alignment at H-paniculata_contig8609:4805..9844+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8609:4805..9844+ >mRNA_H-paniculata_contig8609.16570.1 ID=mRNA_H-paniculata_contig8609.16570.1|Name=mRNA_H-paniculata_contig8609.16570.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig8609:4805..9844+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |