mRNA_H-paniculata_contig8567.16535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8567.16535.1
Unique NamemRNA_H-paniculata_contig8567.16535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 3.210e-123
Identity = 188/218 (86.24%), Postives = 202/218 (92.66%), Query Frame = 3
Query:  108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKSA M +ACAA A AFVAPSAFNGAA+   A+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 366 bits (939), Expect = 6.220e-123
Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 3
Query:  108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKSAVM +ACAA A  F  PSAFNGAALT SA++ S+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 343 bits (880), Expect = 4.300e-114
Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 3
Query:  129 IACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            IACAA A     PSAFNGAAL+  A+SSS+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:    2 IACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 8.660e-114
Identity = 173/198 (87.37%), Postives = 187/198 (94.44%), Query Frame = 3
Query:  168 SAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            SAFNGAA+  SA+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 340 bits (871), Expect = 1.180e-112
Identity = 178/218 (81.65%), Postives = 193/218 (88.53%), Query Frame = 3
Query:  108 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKSA+M +A AA       PSAFNGAALT SA+SSS+MKM+FESEIGAQ PLGF+DPLG+L DADQ+ F+RLRYVEVK GRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 1.560e-112
Identity = 174/197 (88.32%), Postives = 187/197 (94.92%), Query Frame = 3
Query:  171 AFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            AFNGAA+   A+SSS+MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 8.410e-109
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 3
Query:  219 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 317 bits (813), Expect = 2.110e-104
Identity = 158/181 (87.29%), Postives = 168/181 (92.82%), Query Frame = 3
Query:  219 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKM+FE EIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 309 bits (792), Expect = 8.890e-101
Identity = 161/213 (75.59%), Postives = 178/213 (83.57%), Query Frame = 3
Query:  123 MTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            M IACAA A        FNGAAL  SA+SSS+MKM+FESEIGAQPP+GF+DPLG++ADADQERFDRLRYVE+KHGRIAMLA+ GH+TQQNTRLPGMLS    ++FAD PNGVAA SKIPP G  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212          
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 5.730e-92
Identity = 147/206 (71.36%), Postives = 161/206 (78.16%), Query Frame = 3
Query:  219 MKMAFESEIGAQPPLGFFDPLGMLADA-------------------------DQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 761
            MKM+FESE+GAQPPLGFFDPLG+L D                          DQERFDRLRYVEVKHGRI+MLA+AGHL  QN R PG LS  A ++FADMPNGVAA+SKIPP G AQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE3.210e-12386.24LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
FCPB_MACPY6.220e-12387.16Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
FCPF_MACPY4.300e-11484.83Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
A0A6H5JHT6_9PHAE8.660e-11487.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPC_MACPY1.180e-11281.65Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
D8LNK6_ECTSI1.560e-11288.32Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JDS8_9PHAE8.410e-10990.06LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPD_MACPY2.110e-10487.29Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPE_MACPY8.890e-10175.59Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]
A0A6H5KBS3_9PHAE5.730e-9271.36LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8567contigH-paniculata_contig8567:1515..4211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score383.6
Seed ortholog evalue6e-104
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1409
Cds size657
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8567.16535.1prot_H-paniculata_contig8567.16535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8567 2160..4104 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.6064432-UTR-H-paniculata_contig8567:1514..21591622931076.6064432-UTR-H-paniculata_contig8567:1514..2159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8567 1515..2159 -
1691481579.0847695-UTR-H-paniculata_contig8567:1514..21591691481579.0847695-UTR-H-paniculata_contig8567:1514..2159Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8567 1515..2159 -
1622931076.654486-UTR-H-paniculata_contig8567:4104..42111622931076.654486-UTR-H-paniculata_contig8567:4104..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8567 4105..4211 -
1691481579.1130412-UTR-H-paniculata_contig8567:4104..42111691481579.1130412-UTR-H-paniculata_contig8567:4104..4211Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8567 4105..4211 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.6233141-CDS-H-paniculata_contig8567:2159..27541622931076.6233141-CDS-H-paniculata_contig8567:2159..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8567 2160..2754 -
1691481579.0951133-CDS-H-paniculata_contig8567:2159..27541691481579.0951133-CDS-H-paniculata_contig8567:2159..2754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8567 2160..2754 -
1622931076.639331-CDS-H-paniculata_contig8567:4042..41041622931076.639331-CDS-H-paniculata_contig8567:4042..4104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8567 4043..4104 -
1691481579.1037824-CDS-H-paniculata_contig8567:4042..41041691481579.1037824-CDS-H-paniculata_contig8567:4042..4104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8567 4043..4104 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8567.16535.1

>prot_H-paniculata_contig8567.16535.1 ID=prot_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQP
PLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPG
MLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSF
PGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYTFN*
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mRNA from alignment at H-paniculata_contig8567:1515..4211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8567.16535.1 ID=mRNA_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2697bp|location=Sequence derived from alignment at H-paniculata_contig8567:1515..4211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACCAGCACCTCTGCCAACCGTACTACCCCGCCAATCAGTCAGGTAT CACACCACACAACACGCATCATCTTCTTGTCACTCACGCCACATTAGACT CCCGGAGATGAAGTCCGCTGTGATGACTATCGCCTGTGCCGCCGGTGCCC AGGCCTTCGTGGCCCCTAGGTGAGTTCTCCTCGAAGACCCAGTACATGTT CGTTATATTTCTGCCTGGTTGGGCAGTACTGCTTTGTCTGTCTGTCCTTA CCGTTGAAACGGAGATGGAACATCGGTTGAGAGATAGTGTAGCATGGTAT GGAGTGTGGCATTGTCTCTGGGGGAGATGTCGTCAGTGTTTATTTATTGT ACGACGTTGAACACGGGGCATTATCTCCAGTTGTTTCGTTGGTGTGGGGG GCTTGATCACGGCCGCGTCCTGTTGTGTGTTCTCTTCTCTTTAGTGTCGC GTGAAACTACTGTGGCTTGTTATGTAGTTGTCATGTCTGTAAGCGTAATC CTTGTGTGGCTCAAGTCAGTATTGGCAAGCTCATAGTTGTTGGATGTATA ACACACCGAGGCTGCCTCATGTGGGCTTCCACAGAGCATTCGGTTGTACT CTTTCAAAGCAGGTCCGTCGTTAGGCAAGTGATGAGCTGCTACGAGCCCT CTTTTTCGCCTCAAGATTCGGAACAATTGATACTATACACACAGACGTCA TGAGCTACTATGAACAGTTCGTTAAACGTGAACAGGCAGCACCGGCGGTC AGTAAGGAAGTAGGACAAAAGAGAAGGAAAATATAAATATTGACAGCAGC ATAACGCATATCATGAGCTAAACGATCCGGTTCGTGGGACCATGTGGGCC GACGTGTCGATTGTGAAAATCTTCATTCCAGGCAATGGTGTACTCCATGC AACCATGCCGCTAATTATTGCAGAATGTACCTTCAGCTCTGTCGCGCCAA TCATTTCGTATCGTCGATGCAAGAAATATTGTGTACATGGATCAAACAAA AAGCGTTCAGCGGCTCGCCGCAAGATCTTCAAGTCGCGCGCTAGGGGTTG AGAGGAACAGCGGGCTTCACCGTCCGTGAATACTAACAACTTGAGCGTAC CTTGGACGTGAAATATCCGTACTTGTCTTTTTCGAAGTATGCACGTTTTG GAGAGTTCAACTATAACTCCGACAATCGAGTCCTAACACCAGATGTATAT CTACCCGTGGTAGCTACCATGATCATTCCCATGCTTCCATGGAGGAAGCC AACGCACTCTTAGTGAGCCACCGAAGTGCTTGCCCCTCTAGTACGCCCGG ATGCTGTCCTTTGTGGTCCTGTTATATCCCGCGTAGGGCGGTAGTAGCAT CTTGCTTTTATTTCCGACGTCGAGTACTTTACATTAGCTCCCCTTGTACA TGACATTACTCCACATCGTCGTTCCTCTGCTGTGCTATCATGCTCCTCAA TCCGCAGTGCCTTCAACGGTGCCGCCCTAACCCGGTCCGCCCGGTCCTCG TCCTCCATGAAGATGGCTTTCGAGTCCGAGATCGGCGCCCAGCCCCCGCT CGGTTTCTTCGACCCGCTCGGCATGCTGGCCGACGCCGACCAAGAGAGGT TCGACCGTCTCCGATATGTGGAGGTGAAGCACGGCCGCATCGCTATGCTC GCCATCGCTGGTCACCTGACTCAGCAAAACACCCGTCTGCCCGGCATGCT GTCCACCTCGGCGGGTATCTCGTTCGCCGACATGCCTAACGGCGTGGCGG CTTTGTCGAAGATCCCGCCGGCGGGTTTCGCCCAGATCGTGGCGTTCATC GGTTTCCTGGAGTTGGCTGTGATGAAGAATGTGGAGGGCTCGTTCCCCGG AGACTTCACGTTGGGCGGCAACTGGTTCGGATCTTCCTGGGACGCGATGT CGGAGGAGACGCAGGCGTCGAAGCGCGCGATCGAGTTGAACAACGGGCGA GCGGCGCAGATGGGTATCCTGGCTATGATGGTGCACGAGGAGTTGTCGAA CCAGCCCTACATCATCAACGACCTGGTCGGCGCGTCGTACACATTCAACT GAAGCGTACGTGATTGGCGGTGGTGGTTTAGTTCGGACGTTGTAAATATG TGCTGATGTTGATCGTTTGTGGGTGGGTGGGTGGTGCCGAAGAGGCATAC AAATTTGACTAGAGAGGAGAGCGTGGAGGAGTCGTTCTCGAATAGAGTTT ATGCGGTGTCGTATTGTGTTGGGTGTGGGGACGGGGACGGGGACGGGGAC GGGGGAGTGAGGGCTAGGACGCTGGAGGCGTTACGTAGTCGTGTCCCATG TTACCGGGCTCTGCAGGTGTTGGGGTAGTACGGATAGCAGTCGCTTGATC GTAGTGCGATGGTTTGGTCAAGCCGCCTAACGACTGTCGTCATGAGCAAG GAGAATCAGTAATCGGAACGAACACTCTTTGCATGTGCTAGAGTGAGGCG GGTTTAGCTGAAAGAAGCAATTCAACAGAATGTTTTACATTAAATTGCTG TTTATTGAATCCGACCAGAGGTGATCGACCGTCCTGAGTTGTGATTCTTC CGGCGGTGTCACGATATGACCGGTTGTGTTTTTTTCGAGGAGGCATGGAG CTTTCCTGCTACTCGGAAAAACAACAGCTTGTTTCATGTTTCATGTTTCA TTTTTATATTCCCCACGAGCACGTTGTACACCGAAGACGGCGTCGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig8567:1515..4211-

>mRNA_H-paniculata_contig8567.16535.1 ID=mRNA_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig8567:1515..4211- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCCGCTGTGATGACTATCGCCTGTGCCGCCGGTGCCCAGGCCTT
CGTGGCCCCTAGATGAAGTCCGCTGTGATGACTATCGCCTGTGCCGCCGG
TGCCCAGGCCTTCGTGGCCCCTAGTGCCTTCAACGGTGCCGCCCTAACCC
GGTCCGCCCGGTCCTCGTCCTCCATGAAGATGGCTTTCGAGTCCGAGATC
GGCGCCCAGCCCCCGCTCGGTTTCTTCGACCCGCTCGGCATGCTGGCCGA
CGCCGACCAAGAGAGGTTCGACCGTCTCCGATATGTGGAGGTGAAGCACG
GCCGCATCGCTATGCTCGCCATCGCTGGTCACCTGACTCAGCAAAACACC
CGTCTGCCCGGCATGCTGTCCACCTCGGCGGGTATCTCGTTCGCCGACAT
GCCTAACGGCGTGGCGGCTTTGTCGAAGATCCCGCCGGCGGGTTTCGCCC
AGATCGTGGCGTTCATCGGTTTCCTGGAGTTGGCTGTGATGAAGAATGTG
GAGGGCTCGTTCCCCGGAGACTTCACGTTGGGCGGCAACTGGTTCGGATC
TTCCTGGGACGCGATGTCGGAGGAGACGCAGGCGTCGAAGCGCGCGATCG
AGTTGAACAACGGGCGAGCGGCGCAGATGGGTATCCTGGCTATGATGGTG
CACGAGGAGTTGTCGAACCAGCCCTACATCATCAACGACCTGGTCGGCGC
GTCGTACACATTCAACTGATGCCTTCAACGGTGCCGCCCTAACCCGGTCC
GCCCGGTCCTCGTCCTCCATGAAGATGGCTTTCGAGTCCGAGATCGGCGC
CCAGCCCCCGCTCGGTTTCTTCGACCCGCTCGGCATGCTGGCCGACGCCG
ACCAAGAGAGGTTCGACCGTCTCCGATATGTGGAGGTGAAGCACGGCCGC
ATCGCTATGCTCGCCATCGCTGGTCACCTGACTCAGCAAAACACCCGTCT
GCCCGGCATGCTGTCCACCTCGGCGGGTATCTCGTTCGCCGACATGCCTA
ACGGCGTGGCGGCTTTGTCGAAGATCCCGCCGGCGGGTTTCGCCCAGATC
GTGGCGTTCATCGGTTTCCTGGAGTTGGCTGTGATGAAGAATGTGGAGGG
CTCGTTCCCCGGAGACTTCACGTTGGGCGGCAACTGGTTCGGATCTTCCT
GGGACGCGATGTCGGAGGAGACGCAGGCGTCGAAGCGCGCGATCGAGTTG
AACAACGGGCGAGCGGCGCAGATGGGTATCCTGGCTATGATGGTGCACGA
GGAGTTGTCGAACCAGCCCTACATCATCAACGACCTGGTCGGCGCGTCGT
ACACATTCAACTGA
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