prot_H-paniculata_contig8567.16535.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig8567.16535.1
Unique Name	prot_H-paniculata_contig8567.16535.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	219

Homology

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 367 bits (943), Expect = 1.580e-127
Identity = 188/218 (86.24%), Postives = 202/218 (92.66%), Query Frame = 0

Query:    1 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKSA M +ACAA A AFVAPSAFNGAA+   A+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:    1 MKSACMALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 367 bits (941), Expect = 3.080e-127
Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 0

Query:    1 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKSAVM +ACAA A  F  PSAFNGAALT SA++ S+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:    1 MKSAVMAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 343 bits (881), Expect = 3.450e-118
Identity = 179/211 (84.83%), Postives = 190/211 (90.05%), Query Frame = 0

Query:    8 IACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            IACAA A     PSAFNGAAL+  A+SSS+MKM+FESEIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:    2 IACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 6.960e-118
Identity = 173/198 (87.37%), Postives = 187/198 (94.44%), Query Frame = 0

Query:   21 SAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            SAFNGAA+  SA+SSS+MKM+FESEIGAQPPLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 340 bits (873), Expect = 6.800e-117
Identity = 178/218 (81.65%), Postives = 193/218 (88.53%), Query Frame = 0

Query:    1 MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKSA+M +A AA       PSAFNGAALT SA+SSS+MKM+FESEIGAQ PLGF+DPLG+L DADQ+ F+RLRYVEVK GRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    1 MKSAIMAVASAA--PGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

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BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 346 bits (887), Expect = 1.230e-116
Identity = 174/197 (88.32%), Postives = 187/197 (94.92%), Query Frame = 0

Query:   22 AFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            AFNGAA+   A+SSS+MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

[Close]

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 7.410e-113
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 0

Query:   38 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLS SA +SFADMPNGVAALSKIPPAG AQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

[Close]

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 318 bits (814), Expect = 2.010e-108
Identity = 158/181 (87.29%), Postives = 168/181 (92.82%), Query Frame = 0

Query:   38 MKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKM+FE EIGAQ PLGF+DPLG+LADADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP G AQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 310 bits (793), Expect = 8.980e-105
Identity = 161/213 (75.59%), Postives = 178/213 (83.57%), Query Frame = 0

Query:    6 MTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQPPLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            M IACAA A        FNGAAL  SA+SSS+MKM+FESEIGAQPP+GF+DPLG++ADADQERFDRLRYVE+KHGRIAMLA+ GH+TQQNTRLPGMLS    ++FAD PNGVAA SKIPP G  QI+  IG  EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:    1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

[Close]

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 6.970e-96
Identity = 147/206 (71.36%), Postives = 161/206 (78.16%), Query Frame = 0

Query:   38 MKMAFESEIGAQPPLGFFDPLGMLADA-------------------------DQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 218
            MKM+FESE+GAQPPLGFFDPLG+L D                          DQERFDRLRYVEVKHGRI+MLA+AGHL  QN R PG LS  A ++FADMPNGVAA+SKIPP G AQIVAFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig8567.16535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	1.580e-127	86.24	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
FCPB_MACPY	3.080e-127	87.16	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
FCPF_MACPY	3.450e-118	84.83	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
A0A6H5JHT6_9PHAE	6.960e-118	87.37	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPC_MACPY	6.800e-117	81.65	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
D8LNK6_ECTSI	1.230e-116	88.32	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JDS8_9PHAE	7.410e-113	90.06	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPD_MACPY	2.010e-108	87.29	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPE_MACPY	8.980e-105	75.59	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
A0A6H5KBS3_9PHAE	6.970e-96	71.36	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 46..198 e-value: 4.1E-32 score: 111.9
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 41..214 e-value: 2.2E-24 score: 88.3
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 15..202
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..31
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 32..218
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 20..31
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..19
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 33..208
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 15..202

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig8567	contig	H-paniculata_contig8567:2160..4104 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig8567.16535.1	mRNA_H-paniculata_contig8567.16535.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig8567 1515..4211 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig8567.16535.1 ID=prot_H-paniculata_contig8567.16535.1|Name=mRNA_H-paniculata_contig8567.16535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
MKSAVMTIACAAGAQAFVAPSAFNGAALTRSARSSSSMKMAFESEIGAQP
PLGFFDPLGMLADADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNTRLPG
MLSTSAGISFADMPNGVAALSKIPPAGFAQIVAFIGFLELAVMKNVEGSF
PGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEEL
SNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln