mRNA_H-paniculata_contig8498.16479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: D7FNT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT9_ECTSI) HSP 1 Score: 168 bits (426), Expect = 8.410e-46 Identity = 107/202 (52.97%), Postives = 137/202 (67.82%), Query Frame = 3
Query: 390 LPDVAEPESPFSDVVFEEIRTAIKILAARLQREKPLSRDEFERFEAAVAIIVEDALPMQELP--AXXXXXXXXXXXXXXPAALPVSNVASPNL---RRTGDDIDNEGPAWDNKG--YGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKSYGNIVSNDYLKYLNKNPKSDDEEARQEQE--KLKDHENFRNY 968
+P VAE SPFS+ + EE+R AIKILAARLQREKP+SR EFERFE+AV +IVEDALP+Q+LP A X XXX P L V+ PN + EGP WD + YGLP G +NTY ++ ME M PE+YQ ALR +V RA++ R++ SYGNIVSN+YLK+L KNPK+ DE+ ++ +E K K E+FR+Y
Sbjct: 1 MPQVAE--SPFSESLQEELRVAIKILAARLQREKPMSRQEFERFESAVGVIVEDALPLQKLPSPASPASXEAAXXXAAAPPRLAVTQSPVPNADSXXXXXXXFETEGPEWDAEKVQYGLPMGARNTYDIDDMEKMNPEEYQAALREKVVERAQSVRKTGSYGNIVSNEYLKFLGKNPKTGDEKFKKNEEFVKSKGREDFRSY 200
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: A0A836C7S9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S9_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.410e-23 Identity = 99/245 (40.41%), Postives = 141/245 (57.55%), Query Frame = 3
Query: 231 SYAERLKAAQAAKAAARVGDQPSGNHSGVMSTPPXXXXXXXXXXXXXXXXXXGLPDVAEPES----PFSDVVFEEIRTAIKILAARLQREKPLSRDEFERFEAAVAIIVEDALPMQELPAXXXXXXXXXXXXXXPAALPVSNVASPNLRRTGDDIDNEGPAWD-NKGYGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKSYGNIVSNDYLKYLNKNPKSDDEEARQEQEKLKDH 950
SY ERLKAAQ AKAA + + PP XXX V+EP S PF+D + E ++TAI +L+ RL+ PL+R EF+RFE A+ I++DA+P AXXXXXXXXXXXXXX + +++EGPAWD +KGYG+P G +N+Y ++GM+ M+P+ YQ ALR +V R AR++ +YGN +N YL +L+K+P D +E + +E ++
Sbjct: 41 SYMERLKAAQEAKAAKKQ-----------AAAPPAAVAPATXXXVAA---------VSEPLSAAAAPFTDEMQEHLQTAINLLSRRLKSGVPLNRPEFDRFEEAIDAIIKDAVPHLAA-AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGMESEGPAWDASKGYGMPVGVRNSYTIDGMDDMSPDDYQAALREKVLKRVTKARKTGNYGNRAANAYLSFLDKSPTWDVKEEAEPEEDFTEY 264
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: A0A7S0BY33_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BY33_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 3.220e-9 Identity = 35/64 (54.69%), Postives = 49/64 (76.56%), Query Frame = 3
Query: 690 EGPAWDNKG-YGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKSYGNIVSNDYL 878
EGPA+ KG GL SGT+NTYV+EGM+ M+PE+Y+EAL+ +SAR RE+ ++GN+ S +YL
Sbjct: 143 EGPAYTGKGGMGLASGTKNTYVIEGMDEMSPEEYREALQGSISARQDKRRETGTFGNMSSENYL 206
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: B7FSQ6_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FSQ6_PHATC) HSP 1 Score: 63.5 bits (153), Expect = 1.400e-7 Identity = 57/178 (32.02%), Postives = 86/178 (48.31%), Query Frame = 3
Query: 387 GLPDVAEPESP--FSDVVFEEIRTAIKILAARLQREKP--LSRDEFERFEAAVA-IIVEDALPMQELPAXXXXXXXXXXXXXXPAALPVSNVASPNLRRTGDDIDNEGPAWDNKG-YGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKSYGNIVSNDYLKYLNKNPK 902
G+PD + E P F D + ++++A+ L R+Q E P LS E E + ++ +I E + P + ++V S N +D EG A+D KG G P GT NTY++EGME M+ E+Y+ AL + R A R++ GN + DY+ LN N K
Sbjct: 59 GVPDSVDDEYPKNFEDKLLADMQSALLKLERRVQ-EGPGALSLLEVEELDGELSRVIAEMRANGDQRPIKPKSADPSGDLKSAAPSATATSVGSSNSL-----LDEEGEAYDGKGGMGQPKGTVNTYIIEGMEEMSSEEYRLALERSLIDRQAARRQAGVVGNKSTWDYMSQLNPNDK 230
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: A0A7S2LK59_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LK59_9STRA) HSP 1 Score: 57.4 bits (137), Expect = 1.030e-5 Identity = 31/70 (44.29%), Postives = 45/70 (64.29%), Query Frame = 3
Query: 684 DNEGPAWDNKGYGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKS--YGNIVSNDYLKYL 887
D+EGP + G GL +GT NTY++ GM+ M+PE+Y+EAL+ VS R R+++ GN S+ YL L
Sbjct: 51 DDEGPEYAGGGMGLAAGTANTYIIPGMDEMSPEEYREALQKSVSDRQEERRKNRGGVVGNRASHQYLDQL 120
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Match: A0A7S1UWT3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT3_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 2.640e-5 Identity = 31/71 (43.66%), Postives = 47/71 (66.20%), Query Frame = 3
Query: 675 DDIDNEGPAWDNKGYGLPSGTQNTYVLEGMEAMTPEQYQEALRHRVSARARAARESKSYGNIVSNDYLKYL 887
D ++EGPA+ G P+GT+NTYV++GM+ M+PE+Y++AL+ V A+ R R+S GN S Y+ L
Sbjct: 151 DTSNDEGPAYTGT-MGQPAGTRNTYVIDGMDEMSPEEYRQALQQSVVAKQRERRKSGMAGNYGSLSYMNSL 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8498.16479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8498.16479.1 >prot_H-paniculata_contig8498.16479.1 ID=prot_H-paniculata_contig8498.16479.1|Name=mRNA_H-paniculata_contig8498.16479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=311bp MLFAMRTFSLTTLITVAALLPNVSDGFMLPQAQPLARSSRPILRRVRTTPback to top mRNA from alignment at H-paniculata_contig8498:6864..10394+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8498.16479.1 ID=mRNA_H-paniculata_contig8498.16479.1|Name=mRNA_H-paniculata_contig8498.16479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3531bp|location=Sequence derived from alignment at H-paniculata_contig8498:6864..10394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8498:6864..10394+ >mRNA_H-paniculata_contig8498.16479.1 ID=mRNA_H-paniculata_contig8498.16479.1|Name=mRNA_H-paniculata_contig8498.16479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1866bp|location=Sequence derived from alignment at H-paniculata_contig8498:6864..10394+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |