mRNA_H-paniculata_contig845.16447.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig845.16447.1
Unique NamemRNA_H-paniculata_contig845.16447.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: G7E3S6_MIXOS (Integrase catalytic domain-containing protein n=1 Tax=Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) TaxID=764103 RepID=G7E3S6_MIXOS)

HSP 1 Score: 145 bits (366), Expect = 6.880e-36
Identity = 87/263 (33.08%), Postives = 149/263 (56.65%), Query Frame = 1
Query:    1 NAQRTEASPEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGA---VGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRKIV---VIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            N +   ASP+  +W+ A + + + +  N VW   E    +  + T  ++  K+ E G+V +YK+RLVA G RQI GV + E S+   S  + +TVL+LAA +D+EL   D   A+L +P+++ I+++   +Y   PG    V +L KA YGL QAG  W   ++  L A G +Q  ADP+++ K +   ++V I+Y+ DLLI++    +  EL+  L    + K +G+ K +LG  ++R+R    I + + +YA+ +  + G+
Sbjct:  766 NVKEALASPQADYWKDAMDAEYESMAANKVWELVELPPGRKAIDTLFVFATKVDEKGEVYRYKARLVAKGYRQIPGVDYFETSASVASLPAVRTVLALAASRDYELIQADITSAFLNSPLEEDIYIKQQADYT-VPGQETLVCKLKKAIYGLKQAGLAWVNTLSERLIAFGLDQTEADPNIYTKPIGDDLLVLIVYVDDLLIASPTQSLAWELVDFLAQTFQFKRIGEPKKFLGIELSRNRAARTISLRQSVYAQDIVSKAGL 1027          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A8J4AXG8_9CHLO (Uncharacterized protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AXG8_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 4.480e-35
Identity = 85/253 (33.60%), Postives = 142/253 (56.13%), Query Frame = 1
Query:   25 PEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYRE-FPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRKIVV---IVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            PE   W++A + +M  +  N VWT E   K    ++   +Y  K  E G + +YK+RLVA G  Q++GV + E  +P     + + +L++ A +D EL  +D   A+L A +++ ++V+    Y E  PG   +L KA YGL QA R W   +   L + GF+   ADP +F K V+   +  ++Y+ DLLI++  PE++ +  A L S   ++DLG+A+ +LG  I R+R    +K+ +  +AR + E+FG+
Sbjct: 1000 PEASMWKQAMDEEMASIRSNQVWTLEVPPKGVRPLAVKWVYTVKRDEQGDILRYKARLVAKGYTQVEGVDYDEVYAPVSKHATLRALLAVVAERDLELHQLDVGTAFLNAKLEEVVYVQQAPGYTEGIPGMACKLQKALYGLKQAPRAWYGCLKEQLISMGFQVSDADPGLFYKDVLGDRVYVLVYVDDLLIASSNPEVIRQFKAKLMSIFSVRDLGEARVFLGYEIERNRMEGTLKLSQQQFARKVVEKFGL 1252          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 140 bits (353), Expect = 2.750e-34
Identity = 80/247 (32.39%), Postives = 136/247 (55.06%), Query Frame = 1
Query:   40 WQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVF---RKIVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            W RA E +   L+ N  +   +    K  +S   +YK K  E  +  +YK+RLV  G  Q+ G+ FQE  SP    +S + ++S+AA++DW++ H+D + AYL   ++++I+V  P  + E  G V RL KA YGL QAGRCW+ KIT  L    F +  +DP +F    +  +++  +++ D+++ +       ++ + L    ++KDLG     LG ++TRDR   ++ ID+  Y   + +RF +
Sbjct:  240 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSM 484          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 140 bits (353), Expect = 3.780e-34
Identity = 80/247 (32.39%), Postives = 136/247 (55.06%), Query Frame = 1
Query:   40 WQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVF---RKIVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            W RA E +   L+ N  +   +    K  +S   +YK K  E  +  +YK+RLV  G  Q+ G+ FQE  SP    +S + ++S+AA++DW++ H+D + AYL   ++++I+V  P  + E  G V RL KA YGL QAGRCW+ KIT  L    F +  +DP +F    +  +++  +++ D+++ +       ++ + L    ++KDLG     LG ++TRDR   ++ ID+  Y   + +RF +
Sbjct:  845 WDRAMEEERNSLVKNNTYEVVDLPPGKKTLSMKWVYKIKETEGDR--RYKARLVVRGCAQVPGLDFQETYSPVVKYSSLRFLMSMAAVKDWDIDHLDVKTAYLYGDLNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCIFVRNTESAIVIVALWVDDVIVFSDNAGEKSKVKSSLAHHFEMKDLGPIHRCLGMNVTRDRARRQLSIDQTHYIEQVLKRFSM 1089          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A7S2ZD23_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZD23_9RHOD)

HSP 1 Score: 137 bits (344), Expect = 5.270e-33
Identity = 83/249 (33.33%), Postives = 143/249 (57.43%), Query Frame = 1
Query:   19 ASPEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRKIVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERF 765
            A P  ++W+ A   +++ L     WT  +R K K V+ +  ++K K  + G+  K+K RLVA G +Q    HF +  SP  S  S + +LS+AA ++++++ +D   AYL   ++++I++E+P    +  G V +L +  YGL Q+G+ W  K+  DL  KGF    ADP VF K  + V ++Y+ D L+     ++  +  A LR  +K+KDLG+A+ YLG  I+RD+T + +K+ +  Y + + E +
Sbjct:  409 AGPHAQYWEEAIADELESLSKFQTWTLVDRPKDKQVLGSKFVFKVKTNQSGEPLKFKVRLVARGFQQN---HFTDVYSPTVSFDSIRVILSIAAQRNYDIQQMDVSTAYLNGELNEEIYMEMPPG-NQTTGKVCKLNRGLYGLKQSGKIWYEKLRNDLQRKGFYATTADPCVFVKDNIYV-LVYVDDFLLVGNKKDVQ-QAKAQLREMYKMKDLGEAREYLGIEISRDKTTSTVKLGQPKYIQKILEEY 651          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 2.370e-32
Identity = 79/219 (36.07%), Postives = 123/219 (56.16%), Query Frame = 1
Query:  127 VSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRK----IVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            VS    +  K   +GK+ K+K+RLVA G  +I  V +  +SSP PS+ S K +L++A  +   L H D ++AY  A +D++IF+ +P    +    +G+  +A YGL Q+GR W       L   GFEQ  ADP VFRK    +VV++ +IY+ D+L++ +  E   ELLA L+     K+LG+ + +  C I RD     +KI +  Y  +M +RF +
Sbjct:  207 VSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVA-ESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDV 424          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A6D2I001_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I001_9BRAS)

HSP 1 Score: 133 bits (335), Expect = 5.660e-32
Identity = 79/227 (34.80%), Postives = 124/227 (54.63%), Query Frame = 1
Query:   40 WQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGA---VGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVF---RKIVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRD 702
            W+ A  V++  L +N  WT EE    K  + +  +YK K   DG +E YK+RLVA GNRQI G  + E  +P     + +  L +AA  +W +  +D   A+L   + ++++++ P  +  FP     V RL K+ YGL QA RCW  K+T  L   GF+Q HAD S+F   R  + I  +IY+ D++++    + + +    L S  K+KDLG  K++LG  + R+
Sbjct:  358 WRHAMRVEVDALEENQTWTLEELPPGKRAIGSKWVYKIKYNSDGTIECYKARLVALGNRQIAGEDYCETFAPVAKMGTVRLFLKVAAGNNWPVYQMDVHNAFLHGDLQEEVYMKPPPGF--FPEGDTRVCRLRKSIYGLKQASRCWFAKLTTSLREYGFQQTHADYSLFTFDRNGIKIRMLIYVDDMILTGNNEKALQDFKTYLSSCFKMKDLGHLKYFLGIEVARN 582          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A150G7P2_GONPE (Integrase catalytic domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G7P2_GONPE)

HSP 1 Score: 134 bits (336), Expect = 5.970e-32
Identity = 79/262 (30.15%), Postives = 142/262 (54.20%), Query Frame = 1
Query:    1 NAQRTEASPEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPI-DQQIFV-EIPVEYREFPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRKIVV---IVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            N +  ++ P+W  W++A + ++  L  N  WT  + S+   V+    ++  +    G +E+YK+RLVA G  Q+ G+ F E  +P     + +  LS+ A++D EL  +D + A+L   + D  + V ++P   +       RL KA YGL QA R W  ++ ++L A GF+   +DP +F K      +  ++Y+ DLLI+    E + ++ + L S  +++DLG+A+ +LG  I RDR    +K+ +  YA ++  +FG+
Sbjct:  510 NIEEAKSRPDWPMWKKACDEEIASLYCNNTWTLVQVSRATRVIGVKWVFSYEFDASGNIERYKARLVAKGYSQVAGIDFDEVFAPVSKHATLRAFLSVVAVRDLELHQLDVKTAFLNGELEDDDLHVAQLPGYEQGGRDTACRLNKALYGLRQASRTWYERLRSELKAMGFKPSESDPGLFVKEEDGDRVFLLVYVDDLLIAAMKLETVAQIKSRLMSKFEIRDLGEARFFLGYEIERDRAARTLKLSQKRYAETVLAKFGM 771          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A5N6PPX5_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PPX5_9ASTR)

HSP 1 Score: 133 bits (335), Expect = 9.570e-32
Identity = 78/237 (32.91%), Postives = 125/237 (52.74%), Query Frame = 1
Query:    1 NAQRTEASPEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYRE--FPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVF---RKIVVIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHIT 696
            N +  +++ +  HW  A   ++  L  N  W    R     VV +  L++ K   DG +++YK+RLVA G  Q+ G+ +    SP   AT+ + VLSLA + +W+LR +D   A+L   I +++F+E P  +    FP  V  L KA YGL QA R W  +++  L   GF    AD S+F    K  +I  I+Y+ D++++    E +   +A L S+  +KDLG   ++LG  +T
Sbjct:  895 NPKGVKSASKHSHWIEAMNHELNALYKNDTWVLVPRPATHNVVGSKWLFRTKFRADGSIDRYKARLVAQGYSQVPGLDYSHTFSPVVKATTVRVVLSLAVVNNWKLRQLDVNNAFLHGKITERVFMEQPPGFANPHFPNHVCLLKKAIYGLKQAPRAWFDRLSTFLLQCGFSCSRADASLFVYNHKGCLIYLIVYVDDIIVTGNNDEFISSFVAKLHSEFAIKDLGSLNYFLGLEVT 1131          
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Match: A0A5H2YCK7_PRUDU (Transposable element protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YCK7_PRUDU)

HSP 1 Score: 133 bits (334), Expect = 1.150e-31
Identity = 80/249 (32.13%), Postives = 138/249 (55.42%), Query Frame = 1
Query:   40 WQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYKRKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAAIQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYRE--FPGAVGRLGKANYGLVQAGRCWSMKITADLTAKGFEQLHADPSVFRKIV---VIVTIIYMADLLISTKGPEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARSMAERFGI 771
            WQ+A   ++Q L   G W        K +V    +YK K   DG++ +YK+RLVA G  Q +G+ F E  SP    T+ + +LSLAA   W LR +D + A+L   + ++++++ P+ + +  +P  V RL K+ YGL QA R W+ K T  L A GF   H+DPS+F K     V++ ++Y+ D++I+     ++  ++ DL     +KD+G   ++LG  ++   +   + +++  YAR + +R G+
Sbjct:  412 WQQAMIEEIQALQTQGTWDLVPPPSDKNIVGCRWIYKIKRHADGRIARYKARLVAQGFSQEQGIDFDETFSPVVRHTTVRLILSLAASHRWCLRQLDVKNAFLHGDLQEEVYMKQPLGFIDDHYPDYVCRLRKSLYGLKQAPRAWNAKFTRYLPALGFVSSHSDPSLFVKHDGPNVVILLLYVDDIIITGSSSTLVQSVIDDLGQVFDMKDIGQLTYFLGLEVSYQ-SNGDLFVNQAKYARDLLKRAGM 659          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig845.16447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G7E3S6_MIXOS6.880e-3633.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J4AXG8_9CHLO4.480e-3533.60Uncharacterized protein n=1 Tax=Volvox africanus T... [more]
A0A6H5GI29_9HEMI2.750e-3432.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI3.780e-3432.39Integrase catalytic domain-containing protein (Fra... [more]
A0A7S2ZD23_9RHOD5.270e-3333.33Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A6H5JLS1_9PHAE2.370e-3236.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2I001_9BRAS5.660e-3234.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A150G7P2_GONPE5.970e-3230.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PPX5_9ASTR9.570e-3232.91Integrase catalytic domain-containing protein n=2 ... [more]
A0A5H2YCK7_PRUDU1.150e-3132.13Transposable element protein n=3 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig845contigH-paniculata_contig845:30739..31521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score149.8
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog34349.G7E3S6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs2YC45@29000,38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPucciniomycotina
Best eggNOG OGNA|NA|NA
Exons2
Model size771
Cds size771
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.5791059-CDS-H-paniculata_contig845:30738..312841622931061.5791059-CDS-H-paniculata_contig845:30738..31284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig845 30739..31284 +
1691481572.2712126-CDS-H-paniculata_contig845:30738..312841691481572.2712126-CDS-H-paniculata_contig845:30738..31284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig845 30739..31284 +
1622931061.5981505-CDS-H-paniculata_contig845:31296..315211622931061.5981505-CDS-H-paniculata_contig845:31296..31521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig845 31297..31521 +
1691481572.2807813-CDS-H-paniculata_contig845:31296..315211691481572.2807813-CDS-H-paniculata_contig845:31296..31521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig845 31297..31521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig845.16447.1prot_H-paniculata_contig845.16447.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig845 30739..31521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig845.16447.1

>prot_H-paniculata_contig845.16447.1 ID=prot_H-paniculata_contig845.16447.1|Name=mRNA_H-paniculata_contig845.16447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=257bp
NAQRTEASPEWKHWQRAEEVKMQGLIDNGVWTQEERSKKKLVVSTTMLYK
RKIGEDGKVEKYKSRLVAHGNRQIKGVHFQEASSPAPSATSAKTVLSLAA
IQDWELRHVDFEKAYLQAPIDQQIFVEIPVEYREFPGAVGRLGKANYGLV
QAGRCWSMKITADLTAKGFEQLHADPSVFRKIVVIVTIIYMADLLISTKG
PEIMHELLADLRSDHKLKDLGDAKHYLGCHITRDRTMTKIKIDRHLYARS
MAERFGI
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mRNA from alignment at H-paniculata_contig845:30739..31521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig845.16447.1 ID=mRNA_H-paniculata_contig845.16447.1|Name=mRNA_H-paniculata_contig845.16447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=783bp|location=Sequence derived from alignment at H-paniculata_contig845:30739..31521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCCCAAAGAACTGAGGCGTCGCCAGAGTGGAAACACTGGCAAAGAGC GGAGGAAGTCAAAATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGG AGGAGCGCTCGAAGAAAAAGCTGGTCGTGAGCACGACGATGCTCTACAAA AGGAAAATCGGCGAGGACGGTAAAGTGGAGAAATACAAGAGCCGCCTGGT CGCCCATGGGAACCGTCAAATCAAGGGCGTTCACTTCCAGGAAGCTTCAT CCCCTGCACCCTCAGCGACGAGCGCAAAAACGGTGTTGTCGCTTGCGGCA ATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAAAAAGCGTATTTGCA GGCGCCCATCGACCAGCAGATTTTCGTCGAAATTCCCGTAGAATACCGGG AGTTCCCAGGAGCGGTGGGGCGACTCGGCAAGGCAAACTACGGATTGGTG CAAGCCGGTAGATGCTGGAGTATGAAGATTACCGCGGACCTCACGGCGAA AGGGTTCGAGCAATTGCACGCCGACCCGAGTGTGTTCCGCAAGATCGTGG ATTAGGAGGTGGTCATAGTGACCATCATATACATGGCTGACCTTCTGATC AGCACCAAGGGACCCGAAATCATGCACGAGTTGCTGGCAGACCTGCGATC GGATCACAAGCTCAAAGATCTGGGAGATGCAAAGCACTATTTAGGATGCC ACATCACCCGCGATAGGACAATGACAAAGATCAAGATTGACCGGCACCTC TACGCGAGGTCCATGGCCGAGCGTTTCGGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig845:30739..31521+

>mRNA_H-paniculata_contig845.16447.1 ID=mRNA_H-paniculata_contig845.16447.1|Name=mRNA_H-paniculata_contig845.16447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at H-paniculata_contig845:30739..31521+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGCCCAAAGAACTGAGGCGTCGCCAGAGTGGAAACACTGGCAAAGAGC
GGAGGAAGTCAAAATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGG
AGGAGCGCTCGAAGAAAAAGCTGGTCGTGAGCACGACGATGCTCTACAAA
AGGAAAATCGGCGAGGACGGTAAAGTGGAGAAATACAAGAGCCGCCTGGT
CGCCCATGGGAACCGTCAAATCAAGGGCGTTCACTTCCAGGAAGCTTCAT
CCCCTGCACCCTCAGCGACGAGCGCAAAAACGGTGTTGTCGCTTGCGGCA
ATCCAGGACTGGGAGCTTCGGCACGTCGACTTTGAAAAAGCGTATTTGCA
GGCGCCCATCGACCAGCAGATTTTCGTCGAAATTCCCGTAGAATACCGGG
AGTTCCCAGGAGCGGTGGGGCGACTCGGCAAGGCAAACTACGGATTGGTG
CAAGCCGGTAGATGCTGGAGTATGAAGATTACCGCGGACCTCACGGCGAA
AGGGTTCGAGCAATTGCACGCCGACCCGAGTGTGTTCCGCAAGATCAATG
CCCAAAGAACTGAGGCGTCGCCAGAGTGGAAACACTGGCAAAGAGCGGAG
GAAGTCAAAATGCAAGGCCTCATCGACAACGGGGTTTGGACACAGGAGGA
GCGCTCGAAGAAAAAGCTGGTCGTGAGCACGACGATGCTCTACAAAAGGA
AAATCGGCGAGGACGGTAAAGTGGAGAAATACAAGAGCCGCCTGGTCGCC
CATGGGAACCGTCAAATCAAGGGCGTTCACTTCCAGGAAGCTTCATCCCC
TGCACCCTCAGCGACGAGCGCAAAAACGGTGTTGTCGCTTGCGGCAATCC
AGGACTGGGAGCTTCGGCACGTCGACTTTGAAAAAGCGTATTTGCAGGCG
CCCATCGACCAGCAGATTTTCGTCGAAATTCCCGTAGAATACCGGGAGTT
CCCAGGAGCGGTGGGGCGACTCGGCAAGGCAAACTACGGATTGGTGCAAG
CCGGTAGATGCTGGAGTATGAAGATTACCGCGGACCTCACGGCGAAAGGG
TTCGAGCAATTGCACGCCGACCCGAGTGTGTTCCGCAAGATCGTGGTCAT
AGTGACCATCATATACATGGCTGACCTTCTGATCAGCACCAAGGGACCCG
AAATCATGCACGAGTTGCTGGCAGACCTGCGATCGGATCACAAGCTCAAA
GATCTGGGAGATGCAAAGCACTATTTAGGATGCCACATCACCCGCGATAG
GACAATGACAAAGATCAAGATTGACCGGCACCTCTACGCGAGGTCCATGG
CCGAGCGTTTCGGTATAGTGGTCATAGTGACCATCATATACATGGCTGAC
CTTCTGATCAGCACCAAGGGACCCGAAATCATGCACGAGTTGCTGGCAGA
CCTGCGATCGGATCACAAGCTCAAAGATCTGGGAGATGCAAAGCACTATT
TAGGATGCCACATCACCCGCGATAGGACAATGACAAAGATCAAGATTGAC
CGGCACCTCTACGCGAGGTCCATGGCCGAGCGTTTCGGTATA
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