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Homology
BLAST of mRNA_H-paniculata_contig8331.16345.1 vs. uniprot
Match: D7G719_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G719_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.490e-44 Identity = 101/200 (50.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query: 25 SPYLEVECAGLVFECLLEACTECLDAGGWISFDRKEDLTALGRVLRRCVMPVARLCSSALRALESQLDRSLTWRCSQTVGHDDERRRGKXXXXXXXXXDS-DCGSVKWCQPLLEQCDSCADGVRALCASVRRVAFAGGDKGSGTHDNMAAKNRQSSSSKRNQYQVALDRLVKILPGMVLQSDQLTTAVDNARQLLRLPQK 621
SPY E+EC G+V ECL+EAC E L G W S E+LTALGR+LRRCV+PVA CS LRALESQL+R+L WRCSQT+ + R RGK + D G+ + C+ LLEQCD CAD VR L +VR F ++ G D +A ++ DR+VKILPG VLQSDQL+ AVD+AR +L+LP+K
Sbjct: 1768 SPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRALESQLERALAWRCSQTLDVNGVRDRGKSAAVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRTLGTAVRSATFP--EEKDGGADAPSA---------LRPHRTVRDRIVKILPGAVLQSDQLSAAVDHARGVLQLPRK 1956
BLAST of mRNA_H-paniculata_contig8331.16345.1 vs. uniprot
Match: D7G721_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G721_ECTSI) HSP 1 Score: 132 bits (333), Expect = 4.880e-31 Identity = 70/126 (55.56%), Postives = 83/126 (65.87%), Query Frame = 1
Query: 25 SPYLEVECAGLVFECLLEACTECLDAGGWISFDRKEDLTALGRVLRRCVMPVARLCSSALRALESQLDRSLTWRCSQTVGHDDERRRGKXXXXXXXXXDS-DCGSVKWCQPLLEQCDSCADGVRAL 399
SPY E+EC G+V ECL+EAC E L G W S E+LTALGR+LRRCV+PVA CS LR LESQL+R+L WRCSQT+ R RGK + D G+ + C+ LLEQCD CAD VR L
Sbjct: 957 SPYEELECLGMVLECLVEACIESLYNGAWNSSAGAEELTALGRLLRRCVLPVALCCSKTLRTLESQLERALAWRCSQTLDVKGVRDRGKSATVPGGSTEGVDFGAARLCRGLLEQCDLCADAVRML 1082
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 174.9 |
| Seed ortholog evalue | 5.7e-41 |
| Seed eggNOG ortholog | 2880.D7G719 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2E5QG@1,2SCHA@2759 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_011370.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 882 |
| Cds size | 882 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8331.16345.1 >prot_H-paniculata_contig8331.16345.1 ID=prot_H-paniculata_contig8331.16345.1|Name=mRNA_H-paniculata_contig8331.16345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=294bp
RNSGAGARSPYLEVECAGLVFECLLEACTECLDAGGWISFDRKEDLTALG RVLRRCVMPVARLCSSALRALESQLDRSLTWRCSQTVGHDDERRRGKGMG EGDGEDDSDCGSVKWCQPLLEQCDSCADGVRALCASVRRVAFAGGDKGSG THDNMAAKNRQSSSSKRNQYQVALDRLVKILPGMVLQSDQLTTAVDNARQ LLRLPQKSQAAHPPPAHHRQSSPNKSHKATNKPTSKKSSPMREKTKYGSP KLRASARLLARFIACGAMGRRGAVAGEGSKNRAVLSLGARLGRT back to topmRNA from alignment at H-paniculata_contig8331:1115..7223+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig8331.16345.1 ID=mRNA_H-paniculata_contig8331.16345.1|Name=mRNA_H-paniculata_contig8331.16345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6109bp|location=Sequence derived from alignment at H-paniculata_contig8331:1115..7223+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGAACTCCGGGGCGGGCGCTCGAAGCCCGTATTTAGAGGTGGAGTGTGC
GGGATTGGTTTTCGAATGCCTGCTGGAGGCGTGCACGGAGTGCTTAGACG
CGGGCGGTTGGTGAGTACTTTAGGTTAGGATTTATTTAGCGACTGGTTTT
GTTCTTTTTATTCTATGTTTTTGTTTTTGTTTTGTTTTTGTTAGGGAGGA
ATAGGAGCAGGAGCAGCTTCCAAAGTATCAACAAAGCACACAAGGTTGTT
TTTTGGTTGTGGGTGTTTTGCTATGTTGATTGGTTGATTGGTTGATTGGT
TGATTGGTTGGTTGCTTGATTGGTTGGGTGGTGAAAAAAAGGGTCCGAAT
CGTTTGCCACAGATTTTTATATACAAAGTAGTTATTAACAGTGTAGTGTT
GTACTGCAAATAGTACATGTAACATCAGTAAACCTGGTGTTTGTTCTGTG
GTGTTATCGTTTGTTTTGGGGCGGGGGGGTGCTTGTTTGTCTTGTGTTTT
GGTGAAAAAATTGTGCGTGATGACCGAACAGGATATCGTTCGACAGAAAA
GAGGACCTGACAGCGCTTGGAAGGGTCCTGAGGCGGTGCGTGATGCCGGT
GGCCAGGCTGTGTTCCTCTGCACTGAGGTGCGTGTCTGGATTTATGAAAT
GCACACATCATGAGTGCAGTATTGGAACGGACGTGGGCCTAACCGGCTGT
TTCATTGGGTGCTGACCCGGAGGATGTGTTTGCGAGAGTGATTATTTTAG
GGGGGGGCTCAACCATCAAGCCAATATCTTGTACAGCAGATGTCCTGACT
GCAAAGGCGATGTGTGTGTATCTGTGTGTATATGTGTGTTCGCGCGCGCG
CAAATCACGTTTTTGGGAGCATGGTACGCTCTTGAGATACGTATCCGAAC
ATCTTGGTTGCTTTGATTATTGTAATTCAACACACAGACGGGAGTGTATT
GATTTTCTGTCTCTTGGTCTTCGATATATTGGCGGAGACGTTTTCTCGAA
CCATTCAATCGGACATTGTTGACCCGCAAAAGAGATGACAGTCCCGCGTG
TATAAAAAGGCGGCATGCATCCCCCATCATATCAATAGGACGAGCCACAG
GTGGTCAGTCACTGCAATTGACAGCGTTACAACGAACAATGTATGATTCC
GGCAAAGCAGGAGCTGGTTCGCACGATAGCCCACTATTCATCAATATGTA
AACTAGTGTCGGGAGAGGCACTTGTGATGTCATTAGTTGAACTATTTGTA
TATTATATAGTTACCCCTCGCAGAAGTTCTTGGATCATCGTATGTCGTCA
AACTGGTATAACATTGCCAGTCCGATAGATCAACAGACGTAGCCGATTCC
GAGTATTAGTTGCACCGGAATACTTTAGGTATCTGGATGTATATCCAGTA
CGTATGCACGAGTATGTGCCACTGGGCTTTACAAATTGCCTGGAGGGAAG
CAACCGTTTGGTCGCTGGGTCAGGCTCTTTCAGAACAAGAAATTAATCTA
ACATTGGCCTTCTTGAATGTCGATAGAGAGAGCGCTGCAGTCGTTGTGCG
TGTGTACATAGTATCTATATCTGACTGACTATCAGAAGAGCAATGAATCT
CCCTTATTCTCGCAATAATGTCATTAGATGGGCCTTACTGTTTTCACCTC
ATTTTTCAGTAGGTCACATACGGGTCATCTGTGCTGTGGATGGTGATGCC
GAGAGGTGCAGACCTGAGGAAGATTTTCCTTTTTTTCAACAAGCAGAATA
TGTCCGATCTGAATTGATCTGATCTGACATAGCGACTGTATTCCTTGCGA
TCCAAAAGGGACGTAATGACCGTGGGCGAACCTCACTCGCCAACCCACTA
TTTTTCAGGCCAATCATGCTTCTCCTTTGAAAAAATGTTGACCAATAGGA
AAAGTGTAGGCACATGTCCCCCCCCTTTTTGATTATGGTATCATTATTCT
TTGTTCCTCACGCCCGCAGGGCACTCGAGAGCCAACTGGATCGGTCGCTC
ACCTGGCGATGTTCTCAAACCGTGGGGCACGATGACGAAAGAAGGAGAGG
GAAAGGTATGGGTGAGGGTGATGGGGAGGATGACAGCGACTGCGGCTCCG
TGAAATGGTGTCAGCCATTGCTGGAACAGTGCGATTCCTGTGCAGATGGC
GTCCGGGCACTCTGCGCGTCGGTGAGGGGGGGTGGGGGGGGTGGTATGTT
CATTGTGTGTAAAGTTTATTTAAAATAGAGTGGAAGGTCGTACTTGAACT
GTGTCATAACGTATACTAATAATATTTGACAGCCGAAATATGTTGGGGAA
AATGATGCAAGAAAAAACGGTAACCACGAGGTTTGATACAGAAAAAATCC
AGTCTCATCCGATCCAATCCGATCAAATCAATCATTTTGCAAGAAGTCGT
ACATATTACAGCTGTATACGGACAGAGGGAAGCAGTGTCGGCCCTCTTGT
GAATGACACAGATTCACGTTCAGCTTGATAAAAAGGGATATTCTTCCAGG
ACTTAGAAATACACCTCCTCGATCAGATTCCCCTCCGCGGTATGTGTGTC
GGTATGGGCGTGAAGGCTCTTCCCACCTCGGATGAAGGTCGATTAAGGTC
AACGAAGGTTGTCGAGAATTTGGAACTATAGCAGCATGACAACACTTGGC
GCTCTCCAAAACCCGTTCCAATCAATAACTGCAGGTCGTTAACGCCTTGT
TGTCTTTTCAGTTATCGTTCTTGTTTAGGGGAAGCACACAAACAACGGTT
GCCAATTTTGGGGGGGGTAAATTTCGGCTCTTAATGACAGCCCAAAAGGA
TGAAAAATTCCAGATTTCCAGATTTCCAGATTTCCAGATTTCCAGATTTC
CAGATGTCCGCAAAAAAATGCACCTTCTGGTGATTGGTGATGGCTCTAAA
GGTTGAAGATTATGTGGAGGTGTTTTTACTTTGAAAGAAGAACCTTGATG
CGATCTGTCCAAGGTTTCGTGTCCTCTTCGGTTATCTTTTGTCCTATATA
TAATGACAACATGATCAGATTAGCTCTTTTCCGTTGTTCATTGAAAGATG
CCAGGTGGGTAAATCTACGGTAGGCCGCTGTCAGAACGTCCCGGGACCGA
CAGTTTTGAAGCCCGACAGACGTGATATCCATGTGCGTTGGCAAACAGCA
CAGCGGTGGATACATCTCATTGAGGCCCTTCCACCGACACAATTTTTCAG
TGTAAAGAGTTGACACGGTATTATTGAACAAACGCCCTATGACATTTCTG
CTGTCTGAATGCACCCGACATGGTTTTCGAAGTGAATTATTGTTGTGATG
TTGAGGTTTGTGAAATTTCTCTGACCTGCAGTCAATGTTCCCCGGCCCCA
CTTTTTTTTTTTCGTTGATTGATGGCGTGGGCGTGTGCTGTTTCTTTGAC
ATTTCGTTTTATAAAGAGACGTTTCTAAATTGCCTCCCCCGTTTGCCCTC
CCCTCTCTTGTGTTTTGCTGTAATGTTTCCTCATGAATTAACTGAATATG
GTAACTACGTCTAACCCACATTGGTTTAGTAGCTTATATACATACAGATA
TATATAGATATATATAAGACTTGACAAACTGGTAAAAGCGGCGCTTTTTT
TCTGACTTTACACACGTATGAATAATCCGAGCCTTCCCAATGGAAATAAA
AAAGAGCGTGATGACATATAAATTAAAGTGCTACCCCCTTCAAAGTCGTG
TGACAATAGTGGCCTCCGGTTTTTGTGTTTTTAGCCTGTGGTATGAGCAA
AACTACAAACATTTCACCCCCTGGACAAATACGAATACTTGCAAATGGTT
TTCACAAAAAGTAAAAGTATTCGCCTGAGTTTCAGAATGGACGGACACAT
GGAATAAAGGGTTAGGGTTAGGGTTAGGGTATTATTGGCAGTCGTGGATG
ATTCGGGGCACAAAAAATACACGAGCTCATTCTGAAACTCGGGCGAATAC
TTTCAGTTTTTTGTGAAAACCATTTGCAGGTGTTCGTATTTGTCTGGTGG
GTGAAACACTTTAACACCCAGACAAATACGAATAGAAGACACGAATAAAC
ACGAGAAATCTGGAATAAATACTGTATGTGATTGAGTTAGGGAAGATGTC
TATGTGACGCGGATAATATGCAGTGTACTCGATATACCATGGAGCATCGA
AAACTCGGGCAGATAGATTATTCAGTCTGTACAGTACCATCCGGAGAATA
AACATGACCTGCATGTGTGACGGTTGGCCGGGTATACGACCATCTGGTGA
CCATCTGTAGAGATACCGTTCATAGAATTGTAAACGAATATGTACGTGTT
TACCCAAGACAACTGATGATAGTTCGAGATAGTTGCGAATGCTCCATTGG
TATTTGTCCGGGGGGTGAAGCATTTAGTATGAACTCAGGCGGTTCAACAC
CATGACTGGAATTTTCTCACAGCTGTTGTTCCAGCCGCACCGCATCTCAC
TTGACTTGCGCGTCGGAAGGAGAAATTGTCTGCGACGTCCCATATGTACT
ACCTTGTACTGGGGTAAAAAACAGCATGTAACTGTTCAGTAAACCTGGCG
CAAGTGCAAAATATTCAGCAGACATGATGTCATGATAGTACTACTACATC
GTACGCATTGTACGGCACGCATCGGTGAGTGTTGCGGCGTGCGTGGTTCC
ATCGGACCCTGTTTAGGTTGTGGCTGGGGCAGACCCTGCGGTGTCTTTGG
CTCCTCCGGGTGCGCCGCCTTCAAGACCGCCGTCGAGATGACTCATTAAA
CGGCTTTCCTCTTCAGAATCGCTGTTATGACCGCCGCTACTCATGACGCT
CATTGCATCGTGTGATGAATATTTGGCAAGGACTTGATACTGGATACTGT
TTGAGGCGTGCTGGGGGTTCCAGCGAGTCGGAAACGGCAAATAATGGAAA
ATAACTGGATAACGGGAGTTTTCATCAGTCATTTTTTTATTCATTGCAGT
TAACCAAAACTAGCCAGTTGAAATTGGCAATAGCCTTACAACCCTAGTTT
ACATAAAGTATAAACGCGAGTGATACAGTAATACGCCCCTCCCCCTTCCT
TCCCCGTTGGCTCTCCAGGTACGTAGGGTGGCCTTTGCAGGTGGCGACAA
GGGTAGTGGTACCCACGACAACATGGCGGCGAAAAACAGGCAATCCTCGT
CTAGCAAACGGAATCAGTATCAAGTAGCACTCGATCGCTTGGTAAAGGTA
CGTGCGCGTGACAGCTAGCCCTCTTGCTGCCTTCCCTCTTGATCGTATCT
TCGGAGCACTGAGCACTAAGTACCGCTCGCGTCCGGAGTACTTGCAATGA
TGATTGATTGCTCGGGTTTCAAGTTCGAAGAGAGGGAAAAAAAGAGTCAT
GAATGATTAGAAAATATTGTGTGCTGGGAATACGCATCACTTGTACATTC
ATGTGCGACCTGTACATTTTCAAGAGTAGTGACCATTCCCATATACCATT
AATCTTATCTATCGCGAGGAGATATATTCTCAGAGCACCTCCGAAATATT
TCTATTGTTGTGCTAAATTTTCTTTACCCCCCCCTGTGCCTTCTTTGGTT
TGGGGGCTGCGCAATACACCACCGCCGGCGATAACCTCTTAAGTTCGAGG
ATGCGCAGTTGTGCGCGCACAGCCAGATAAGTAAGACCGATATGAGGTGT
TGTTTTTTATGAAATGCGGATATGCCAGGTAGGTGCTAAACAAGACACAT
ACCCGCTGCCGCCCCCCCGTCCATCTGCGTCTCCCCTTCCCGGGAATCCC
CGCTGACCAATCAGATTCTTCCGGGAATGGTACTGCAGAGCGATCAGCTC
ACCACGGCCGTGGACAACGCTCGCCAACTGTTGCGGCTCCCTCAGAAAAG
CCAAGCAGCTCACCCGCCCCCCGCGCACCATCGTCAATCGTCCCCTAATA
AATCTCATAAAGCTACTAATAAACCCACGTCGAAAAAGAGTTCCCCTATG
CGAGAGAAAACAAAATACGGTAGTCCCAAGTTGCGAGCGTCAGCCAGGCT
GTTGGCAAGGTTCATCGCCTGCGGCGCCATGGGCAGGCGGGGTGCGGTGG
CGGGCGAAGGCTCGAAGAACAGAGCAGTGCTGAGCTTGGGGGCTAGGCTA
GGAAGGACA back to topCoding sequence (CDS) from alignment at H-paniculata_contig8331:1115..7223+ >mRNA_H-paniculata_contig8331.16345.1 ID=mRNA_H-paniculata_contig8331.16345.1|Name=mRNA_H-paniculata_contig8331.16345.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at H-paniculata_contig8331:1115..7223+ (Halopteris paniculata Hal_grac_a_UBK monoicous) CGGAACTCCGGGGCGGGCGCTCGAAGCCCGTATTTAGAGGTGGAGTGTGC GGGATTGGTTTTCGAATGCCTGCTGGAGGCGTGCACGGAGTGCTTAGACG CGGGCGGTTGCGGAACTCCGGGGCGGGCGCTCGAAGCCCGTATTTAGAGG TGGAGTGTGCGGGATTGGTTTTCGAATGCCTGCTGGAGGCGTGCACGGAG TGCTTAGACGCGGGCGGTTGGATATCGTTCGACAGAAAAGAGGACCTGAC AGCGCTTGGAAGGGTCCTGAGGCGGTGCGTGATGCCGGTGGCCAGGCTGT GTTCCTCTGCACTGAGGATATCGTTCGACAGAAAAGAGGACCTGACAGCG CTTGGAAGGGTCCTGAGGCGGTGCGTGATGCCGGTGGCCAGGCTGTGTTC CTCTGCACTGAGGGCACTCGAGAGCCAACTGGATCGGTCGCTCACCTGGC GATGTTCTCAAACCGTGGGGCACGATGACGAAAGAAGGAGAGGGAAAGGT ATGGGTGAGGGTGATGGGGAGGATGACAGCGACTGCGGCTCCGTGAAATG GTGTCAGCCATTGCTGGAACAGTGCGATTCCTGTGCAGATGGCGTCCGGG CACTCTGCGCGTCGGGCACTCGAGAGCCAACTGGATCGGTCGCTCACCTG GCGATGTTCTCAAACCGTGGGGCACGATGACGAAAGAAGGAGAGGGAAAG GTATGGGTGAGGGTGATGGGGAGGATGACAGCGACTGCGGCTCCGTGAAA TGGTGTCAGCCATTGCTGGAACAGTGCGATTCCTGTGCAGATGGCGTCCG GGCACTCTGCGCGTCGGTACGTAGGGTGGCCTTTGCAGGTGGCGACAAGG GTAGTGGTACCCACGACAACATGGCGGCGAAAAACAGGCAATCCTCGTCT AGCAAACGGAATCAGTATCAAGTAGCACTCGATCGCTTGGTAAAGGTACG TAGGGTGGCCTTTGCAGGTGGCGACAAGGGTAGTGGTACCCACGACAACA TGGCGGCGAAAAACAGGCAATCCTCGTCTAGCAAACGGAATCAGTATCAA GTAGCACTCGATCGCTTGGTAAAGATTCTTCCGGGAATGGTACTGCAGAG CGATCAGCTCACCACGGCCGTGGACAACGCTCGCCAACTGTTGCGGCTCC CTCAGAAAAGCCAAGCAGCTCACCCGCCCCCCGCGCACCATCGTCAATCG TCCCCTAATAAATCTCATAAAGCTACTAATAAACCCACGTCGAAAAAGAG TTCCCCTATGCGAGAGAAAACAAAATACGGTAGTCCCAAGTTGCGAGCGT CAGCCAGGCTGTTGGCAAGGTTCATCGCCTGCGGCGCCATGGGCAGGCGG GGTGCGGTGGCGGGCGAAGGCTCGAAGAACAGAGCAGTGCTGAGCTTGGG GGCTAGGCTAGGAAGGACAATTCTTCCGGGAATGGTACTGCAGAGCGATC AGCTCACCACGGCCGTGGACAACGCTCGCCAACTGTTGCGGCTCCCTCAG AAAAGCCAAGCAGCTCACCCGCCCCCCGCGCACCATCGTCAATCGTCCCC TAATAAATCTCATAAAGCTACTAATAAACCCACGTCGAAAAAGAGTTCCC CTATGCGAGAGAAAACAAAATACGGTAGTCCCAAGTTGCGAGCGTCAGCC AGGCTGTTGGCAAGGTTCATCGCCTGCGGCGCCATGGGCAGGCGGGGTGC GGTGGCGGGCGAAGGCTCGAAGAACAGAGCAGTGCTGAGCTTGGGGGCTA GGCTAGGAAGGACA back to top
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