prot_H-paniculata_contig8274.16294.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8274.16294.1
Unique Nameprot_H-paniculata_contig8274.16294.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length218
Homology
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: UPI001131AAB8 (Ty1/Copia family RNAse HI domain-containing protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001131AAB8)

HSP 1 Score: 105 bits (261), Expect = 2.510e-23
Identity = 68/194 (35.05%), Postives = 105/194 (54.12%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVT-KTSMLPATAGSKALTKNDESTMPE-ERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSG 200
            +++YVDD++I++K S E+D+L + L ++ ++ DL EAK  LG  I RDR  ++L      Y   + +RFG+  KT  +     S        S M E ER  +   P    V + M+A    RPDI+ A    +++  N G  H +AV  IL+Y+  T D+ + + Q+D +  +V Y DSDFA   D RRS +G
Sbjct:   25 LLLYVDDMLIASKNSEEIDKLKIQLKKEFEMKDLGEAKKILGMEIIRDRRSKKLCLSQKEYLKRVLQRFGIDDKTKPVSTPLASHFKLSTTMSPMDEAEREYMSKVPYANVVGSLMYAMVCTRPDISQAVGVISRYMHNPGKEHWQAVKWILRYIHNTVDVGLVFEQEDNQ-SVVGYCDSDFAGDLDKRRSTTG 217          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: V5ZTC4_9BRAS (Hypothetical transposable element-related protein (Fragment) n=1 Tax=Boechera divaricarpa TaxID=115915 RepID=V5ZTC4_9BRAS)

HSP 1 Score: 106 bits (265), Expect = 6.290e-23
Identity = 68/202 (33.66%), Postives = 107/202 (52.97%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSKALTKNDESTMPEERAEIRAF---PCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T     + E+   L ++ ++ DL EA + LG  I RDR +  L      Y   + +RFG+   K    P   G K       S  P+E  EI+     P   AV + M+A    RPDI +      ++  N G+ H KA  ++++Y+ +T D  +TY + D  +EI+ Y+DSDFA C DSR+S SG + L+
Sbjct: 1021 LVLYVDDILLATNDINMLHEIKNFLKDNFEMKDLGEASFVLGIQIIRDRNQGILRLSQKNYIDKVLKRFGMHDCKPGDTPVAKGDKFCL----SQCPKENLEIQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGVLGRYLSNPGLDHWKAAKRVMRYLQRTKDYMLTYQRSD-NLEIIGYSDSDFAGCQDSRKSTSGYVFLL 1217          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438DEJ3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DEJ3_VITVI)

HSP 1 Score: 102 bits (253), Expect = 5.180e-22
Identity = 62/200 (31.00%), Postives = 112/200 (56.00%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +RFG+  +K    P   G K +L +  ++++  E  E++  P    V + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:   97 LVLYVDDILLATNDISILHDTKSFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRFGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASVVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 293          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A5B7I7_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B7I7_VITVI)

HSP 1 Score: 103 bits (257), Expect = 6.830e-22
Identity = 62/205 (30.24%), Postives = 115/205 (56.10%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSM--LPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLMEALSA 210
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  + +   P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L++   A
Sbjct:  561 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKLGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLLDEFVA 762          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438G156_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438G156_VITVI)

HSP 1 Score: 102 bits (254), Expect = 1.760e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  725 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLSDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 921          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438CGK4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CGK4_VITVI)

HSP 1 Score: 102 bits (253), Expect = 2.390e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  670 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 866          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438E561_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E561_VITVI)

HSP 1 Score: 102 bits (253), Expect = 2.430e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  856 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 1052          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438CGN0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CGN0_VITVI)

HSP 1 Score: 102 bits (253), Expect = 2.460e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  749 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 945          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438CE37_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CE37_VITVI)

HSP 1 Score: 102 bits (253), Expect = 2.470e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  897 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 1093          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438JDV8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JDV8_VITVI)

HSP 1 Score: 102 bits (253), Expect = 2.470e-21
Identity = 62/200 (31.00%), Postives = 113/200 (56.50%), Query Frame = 0
Query:    9 IVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSK-ALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLM 205
            +V+YVDD++++T   + + +    L++  ++ DL +A + LG  I RDR R  L      Y   + +R+G+  +K    P   G K +L +  ++++  E  E++  P   AV + M+A    RPDI +      ++  N G+ H +A  ++++Y+ +T +  +TY + D ++E++ Y+DSDFA C DSRRS SG + L+
Sbjct:  882 LVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSL--ESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRAAKRVMRYLQRTKEYMLTYRRLD-QLELIGYSDSDFAGCQDSRRSTSGYIYLL 1078          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001131AAB82.510e-2335.05Ty1/Copia family RNAse HI domain-containing protei... [more]
V5ZTC4_9BRAS6.290e-2333.66Hypothetical transposable element-related protein ... [more]
A0A438DEJ3_VITVI5.180e-2231.00Retrovirus-related Pol polyprotein from transposon... [more]
A5B7I7_VITVI6.830e-2230.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A438G156_VITVI1.760e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CGK4_VITVI2.390e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E561_VITVI2.430e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CGN0_VITVI2.460e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CE37_VITVI2.470e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JDV8_VITVI2.470e-2131.00Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 8..83
e-value: 3.6E-7
score: 30.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8274contigH-paniculata_contig8274:8059..8712 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8274.16294.1mRNA_H-paniculata_contig8274.16294.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8274 7495..9012 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8274.16294.1 ID=prot_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLG
CHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDES
TMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPH
KKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSG
GLVLMEALSADTPEPRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2