mRNA_H-paniculata_contig8274.16294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8274.16294.1
Unique NamemRNA_H-paniculata_contig8274.16294.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.210e-55
Identity = 132/433 (30.48%), Postives = 217/433 (50.12%), Query Frame = 1
Query:  259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
            E   P     + ++L + A  ++  LRH D +QA++Q+ +D+++F+ +PE      G + +L+K++YGL QA R WH  +        F Q  A+ C+ R I +   V  +VV+VDD + S       D+   DL     + +L + +++ GC   RD +   L      YA  +   FGV     +P   G K L++ D+        E+ ++P RE + + MW AT  RPDI +A R  A++C +    H +A L IL YV++T+D+ IT+ +     + +  + D+D+A     RRS SGGLV+             + ++  T E       +  +         LFLRQV  F++P+       + EDN GA ++AQN  S+  ++ IDV++H IR  V   ++ + +V++  Q AD LTK L  G F
Sbjct:   10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.170e-54
Identity = 132/433 (30.48%), Postives = 217/433 (50.12%), Query Frame = 1
Query:  259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
            E   P     + ++L + A  ++  LRH D +QA++Q+ +D+++F+ +PE      G + +L+K++YGL QA R WH  +        F Q  A+ C+ R I +   V  +VV+VDD + S       D+   DL     + +L + +++ GC   RD +   L      YA  +   FGV     +P   G K L++ D+        E+ ++P RE + + MW AT  RPDI +A R  A++C +    H +A L IL YV++T+D+ IT+ +     + +  + D+D+A     RRS SGGLV+             + ++  T E       +  +         LFLRQV  F++P+       + EDN GA ++AQN  S+  ++ IDV++H IR  V   ++ + +V++  Q AD LTK L  G F
Sbjct:  184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 199 bits (505), Expect = 9.250e-54
Identity = 151/519 (29.09%), Postives = 251/519 (48.36%), Query Frame = 1
Query:   10 EPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGA--VGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLMEA------------LSADTPEPRT*RQRE*-----WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            EP N  EA  S +  +W +A K EM S+  N  WT V  P D+  I    ++K+K + D NV  ++ RLV  G RQ+  + Y E  +P     + +++L+ AA  D+E+  +D + A++   +++E+++  PE + +  GA  V +L ++IYGLVQA R W+ +     KA  F Q+    C+ +K+    +VA +++YVDD+++       +D +   L +   + DL EA Y LG  I RDR RR +      Y   + ++F +   K   LP   G K L+K    T  E+R +++  P   A+ + M+A    RPD+  A   A ++  N GV H  AV  IL+Y+ +T D+ + Y   D E+ +  Y D+ F    D  +S +G +  +              ++  T E       E      W +         F+  +   ++P      + I  DN GA  +A+     +RT+ I  +++ IR  V  G +E+  + T+   AD LTK L
Sbjct:    7 EPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKVSG-SSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGVK-LSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRTKDMFLVYGG-DKELIVNGYVDASFDTDPDDSKSQTGYVFTLNGGAVSWCSSKQSVVAGSTCEAEYIAASEAANEGVWMKE--------FISDLG--VIPSASGPMK-IFCDNTGAIALAKESRFHKRTKHIKRRFNSIRDLVQVGDIEICKIHTDLNVADPLTKPL 511          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.650e-52
Identity = 146/484 (30.17%), Postives = 241/484 (49.79%), Query Frame = 1
Query:   73 KEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDL-VISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVLME----ALSADTPEPRT*RQRE*WRRNMSH*-RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            +E  QS  S  F    KR +    I + +L+  K++      K + RLV  G+ Q   + + ++  P   + + +ML + A   D EL H D  QA+++AP+++ IF+ +PE      G + +L+K++YGL QA R W+  +     A  FEQ  A+ CL R +   E V  +VV+VDD+  + TK     D+   DL E   +  L E K++ GC+   DRE   +T     Y   + ER+GV     +P     K    + +    E        P R  V + +W A + RPDI ++ R  A++     + H KA L  L Y ++T+   I++ +       ++ +  +D+A     RRS SGG+V+      A  + T +  T    +     M+   +  LFLRQV  F++PK       + EDN GA ++A++  S+  ++ IDV++H +R+ VD  +VE+++V ++ Q AD LTK L
Sbjct:  127 REAKQSEHSVQFMDAAKRERIDNCIKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKE--RCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH-------PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 8.450e-52
Identity = 131/433 (30.25%), Postives = 217/433 (50.12%), Query Frame = 1
Query:  259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
            E   P     + ++L + A  ++  LRH D +QA++Q+ +D+++F+ +PE      G + +L+K++YGL QA R WH  +        F Q  A+ C+ R I +   V  +VV+VDD + S       D+   DL     + +L + +++ GC   RD +   L      YA  +   FGV     +P   G K L++ D+        E+ ++P RE + + MW AT  RPDI +A R  A++C +    H +A L IL YV++T+D+ IT+ +     + +  + D+D+A     RRS SGGLV+             + ++  T E       +  +         LFLRQV  F++P+       + EDN GA ++AQN  S+  ++ IDV++H IR  V   ++ + +V++  Q A+ LTK L  G F
Sbjct:  705 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDF 1122          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: V5ZTC4_9BRAS (Hypothetical transposable element-related protein (Fragment) n=1 Tax=Boechera divaricarpa TaxID=115915 RepID=V5ZTC4_9BRAS)

HSP 1 Score: 198 bits (503), Expect = 4.420e-51
Identity = 148/523 (28.30%), Postives = 248/523 (47.42%), Query Frame = 1
Query:    1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEY--REFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSKALTKNDESTMPEERAEIRAF---PCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSG-----------------GLVLMEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTK 1497
            L  +P + REA  S    +W K  +EE QS++ N  W  V+ PK +  I    ++K K +   NV +++ RLV  G  Q   + Y E  +P     + + +++  A  D EL  +D + A++   ID+ I++  PE +   +    V +L+K+IYGL QA R W+ K      +  FE +    C+ +K    + +  +V+YVDD++++T     + E+   L ++ ++ DL EA + LG  I RDR +  L      Y   + +RFG+   K    P   G K       S  P+E  EI+     P   AV + M+A    RPDI +      ++  N G+ H KA  ++++Y+ +T D  +TY + D  +EI+ Y+DSDFA C DSR+S SG                  LV    ++A+         +  W +N      F+   Q+   I   L  Y      DN  A   +    S+ +++ ID+K+ +++  + +G + + ++ T    AD LTK
Sbjct:  824 LKDDPVSFREAMGSSNSEKWIKGMEEEYQSMLDNKVWDLVELPKGQKPIGCKWIFKTKRDSSGNVQRYKARLVAKGYTQKEGIDYKETFSPVSSKESFRTIMALVAHYDLELHQMDVKTAFLNGDIDETIYMEQPENFVSHDSKKMVCKLNKSIYGLKQASRQWYHKFHKVIISFGFEVNLVEDCVYQKFSGSKLIF-LVLYVDDILLATNDINMLHEIKNFLKDNFEMKDLGEASFVLGIQIIRDRNQGILRLSQKNYIDKVLKRFGMHDCKPGDTPVAKGDKFCL----SQCPKENLEIQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGVLGRYLSNPGLDHWKAAKRVMRYLQRTKDYMLTYQRSD-NLEIIGYSDSDFAGCQDSRKSTSGYVFLLAGGAISWRSAKQSLVASSTMAAEFVAVFEASNQGLWLKN------FVTRLQILEGIERPLKIYC-----DNKSAVLYSNKNRSTTKSKFIDIKFLVVQERIQSGDISIEHIGTNSMVADPLTK 1329          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A0V1FL71_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FL71_TRIPS)

HSP 1 Score: 197 bits (500), Expect = 4.440e-51
Identity = 149/495 (30.10%), Postives = 242/495 (48.89%), Query Frame = 1
Query:   55 QWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCL--LRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVT-----KTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLME--ALSADTPEPRT*R--QRE*WRRNMSH*-RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            +W KA  EE+ S   N  W     P  K  I +  ++K K  +D  + K + RLV  G  Q+  + + +   P  G  + + LLS AA  + E+  +D   A++   +++EI++ +P    +      RL K+IYGL QA R W+  +    ++    +    PC+  LRK    +   A+ VYVDDL+I +   +  +EL + L E  K+ DL +A + LG  I +D E   L+     Y   M  RF ++     KT + P    SKA+    +    EE  ++ A P REAV   ++ +   RPDI HA    ++FC N G  H  AV +I +Y+  T    + Y Q   E     Y+DSD+    D RRS SG +V     A++  + + RT      E     +SH  +   +LR +Q+ +  + +    T++ DN GA  ++  + SS RTR ID++YH ++  +  G++E+  + + +  AD+ TK L
Sbjct:  392 EWLKAINEELASHRENQSWEPAVLPPHKKAIKSKWVFKTKYKEDGTIEKRKARLVAKGYSQLQGIDFEDTFAPTLGYSSLRYLLSLAAKYNLEVDQMDVVTAFLNPSLNEEIYMELPSGVGDENNKYCRLRKSIYGLKQASRAWYGMLDETLRSFGLNRLKNEPCIYFLRK---NKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLDPNQVLSKAMMPRSD----EEIKQMHAVPYREAVGCLVYLSQSCRPDICHAVGIVSRFCDNPGKAHWTAVKRIFRYLKYTKAAKLVYRQ--IENAFTVYSDSDWGNDRDDRRSISGCVVCHSGAAIAWTSKKQRTVALSTTEAEYMALSHAAKETAWLRSLQSEL--EKESSKPTLLCDNSGAVSISTGQSSSARTRHIDIRYHFVKEKIQEGEIEMRQIPSADNAADMFTKAL 875          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6A3LVG8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LVG8_9STRA)

HSP 1 Score: 197 bits (502), Expect = 5.040e-51
Identity = 150/512 (29.30%), Postives = 255/512 (49.80%), Query Frame = 1
Query:    1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGA--VGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCL-LRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTK-TSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLME--ALSADTPEPRT*RQR--E*WRRNMSH*-RRFLFLRQVQAFIVPKLDYY--TETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            + A+P     A +  +   WR A   E  S+ +NG WT +  P  K  ++   L+K+K N D ++ +++ RLV  G +Q+    + E+  P     + ++LL+ A ++D E+  +D + A++   +++E+++  P+          V +L K++YGL QA R WH  +T     + FE+     C+ +R+   R  +  + +YVD+L++ +K    M++L   +    K  DL E  + LG  ITRDR  R+L  +      S+ ++F +     +   TA  K LTK       E  A++   P R+AV + M+    +RPD+  A +  ++F  N G  H +AV + ++Y+  T +  + +S     V + AY DSD+A C+D RRS SG + ++    ++  + + R   Q   E     ++H  R  LFLRQ+    + +L Y      I EDN     +A+N     R + IDV+YH IR  V    V L  V +++  AD LTK L
Sbjct:  586 IAADPQTYDRAVSGPDACHWRGAINNEAASLKTNGTWTLMPLPSGKRALSCRWLFKKKYNSDGSIERYKARLVVIGCQQVKYRDFDEIFAPVIRLESLRVLLAIACIEDLEVHQMDIETAFLNGTLNEEVYMTQPQGMMTAGKQEWVCKLHKSLYGLKQAPRAWHQALTSYLTQEGFEKLSCESCIYIRRC--RGELEIVAIYVDNLLLLSKSFGVMEKLKQSIGSAFKANDLGEVSFLLGLKITRDRRARKLWINQQSNVDSILQKFNMEHGAGVATPTAAGKKLTKQQAPATEEATAKMLKKPFRQAVGSLMYQMIGSRPDMAFAIQDTSRFLSNYGEAHWQAVKRCIRYLKATRNYGLEFSGN--AVVLRAYTDSDYAGCEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFLRQL----LKELGYEQAATVINEDNQACIAIAENPAQHSRVKHIDVRYHFIREHVQHKDVNLQYVVSKDNVADALTKGL 1089          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 191 bits (486), Expect = 5.050e-51
Identity = 147/526 (27.95%), Postives = 257/526 (48.86%), Query Frame = 1
Query:    1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYR--EFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPE------ERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLMEA------------LSADTPEPRT*RQRE*-----WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            L  +P +  + + S    +W KA K+EM+S+  NG W  V+ PK    I    ++K K +   N+ +++ RLV  G  Q   + Y E  +P     + +++++  A  D EL  +D + A++   ID+ I++  PE +   +    V RL ++IYGL QA R W+ K      +  F+++  + C+  K    + +  +V+YVDD+++++     + E    L+    + DL  A + LG  I RDR R  L      Y   +  RFG++  +      G   + K D+ ++ +      E+ ++  FP   AV + M+A    RPDI +      ++  N G+ H K   ++++Y+ +T D  +TY ++   +EIVAY+DSDFA C DSRRS SG + ++              +++ T E       E      W RN        F+ Q++  IV  ++     I  DN  A+  ++N  SS +++ ID+K+ +++  V + QV + ++ T    AD LTK L
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKFSGSKFII-LVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYA-----PGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY-RRSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLRN--------FVTQLR--IVDGIEKPLR-INCDNKAAELYSKNNRSSSKSKHIDIKFLVVKERVQSLQVSIEHISTNSMIADPLTKGL 510          
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA)

HSP 1 Score: 197 bits (500), Expect = 7.000e-51
Identity = 145/495 (29.29%), Postives = 243/495 (49.09%), Query Frame = 1
Query:   61 RKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREF----PGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDC-EVEIVAYADSDFALCDDSRRSGSG-GLVLMEALSADTPEPRT*RQRE*WRRNM--------SH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
            RKA   E Q+ + NG W     PK +  I++  +   K +Q+  + + + R +  G  Q     Y     P     T +++L+ A + D EL ++D + AY+Q+ +++++++  P  Y ++       V RL K++YGL Q+GR WH KI   F+   F  S A+PCL  K      +  IV+YVDDL+I++     +D+    ++ +  + DL E  + LG  I R+RE+R +      Y   +  +FG+     +  T     LTK D      +   ++       V + ++AA + RPDI  A ++  K  Q S   H  A  ++L+Y+  T D+ I Y+        +V +AD+D+A   D+RRS SG    L      +T + +  +Q      +         S  +  +++RQ+   +  K D  T  I+EDN     M  N  + ++T+ IDV+YH +R  V++ +VELV + T+ Q ADILTK L
Sbjct:  219 RKARDAEYQAHMKNGTWELTTLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPV-LTPMEGTLTKMDGKDAKPDNEYMKL------VGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPT-VIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 705          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLN0_9PHAE1.210e-5530.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQB8_9PHAE4.170e-5430.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00202464359.250e-5429.09hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A6H5K307_9PHAE1.650e-5230.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K2R1_9PHAE8.450e-5230.25Integrase catalytic domain-containing protein n=3 ... [more]
V5ZTC4_9BRAS4.420e-5128.30Hypothetical transposable element-related protein ... [more]
A0A0V1FL71_TRIPS4.440e-5130.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3LVG8_9STRA5.040e-5129.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HUL4_VITVI5.050e-5127.95Retrovirus-related Pol polyprotein from transposon... [more]
W7TIM1_9STRA7.000e-5129.29Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8274contigH-paniculata_contig8274:7495..9012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size1518
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8274.16294.1prot_H-paniculata_contig8274.16294.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8274 8059..8712 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.4834187-UTR-H-paniculata_contig8274:7494..80581622931038.4834187-UTR-H-paniculata_contig8274:7494..8058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8274 7495..8058 +
1691481561.4211946-UTR-H-paniculata_contig8274:7494..80581691481561.4211946-UTR-H-paniculata_contig8274:7494..8058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8274 7495..8058 +
1622931038.518361-UTR-H-paniculata_contig8274:8712..90121622931038.518361-UTR-H-paniculata_contig8274:8712..9012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8274 8713..9012 +
1691481561.4559538-UTR-H-paniculata_contig8274:8712..90121691481561.4559538-UTR-H-paniculata_contig8274:8712..9012Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8274 8713..9012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931038.4985077-CDS-H-paniculata_contig8274:8058..87121622931038.4985077-CDS-H-paniculata_contig8274:8058..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8274 8059..8712 +
1691481561.4416482-CDS-H-paniculata_contig8274:8058..87121691481561.4416482-CDS-H-paniculata_contig8274:8058..8712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8274 8059..8712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8274.16294.1

>prot_H-paniculata_contig8274.16294.1 ID=prot_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLG
CHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDES
TMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPH
KKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSG
GLVLMEALSADTPEPRT*
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mRNA from alignment at H-paniculata_contig8274:7495..9012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8274.16294.1 ID=mRNA_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig8274:7495..9012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCCTGCGGAACCCAATAATCGCCGAGAGGCGCAAGCGTCGTTAGAGTG GGTACAGTGGAGAAAGGCGGAGAAAGAAGAGATGCAAAGCGTCATCAGCA ACGGATTTTGGACGCAGGTGAAACGCCCAAAGGACAAGATGGTCATAACC ACAATGATGCTTTACAAAAGGAAGATTAATCAGGACAGCAACGTGGCCAA GCACCAAGGTCGCCTCGTCACCCACGGCAATCGCCAGATCAATGATCTCC ACTACTGGGAAGTATCGACTCCTGCCCCCGGAGCCGTCACCACGAAGATG TTATTGTCGGCCGCGGCAGTAAAGGACTGGGAGCTCCGACACGTCGACTT CCAACAGGCGTACATACAAGCACCCATCGATCAGGAGATCTTCATCGCAA TACCCGAAGAATATCGGGAATTTCCGGGCGCGGTGGGGCGGCTAGACAAA GCGATTTACGGATTAGTACAGGCAGGGCGGTACTGGCACATGAAGATCAC CTACGACTTCAAGGCGAAATAGTTCGAGCAATCACACGCGAACCCGTGCT TGTTACGAAAGATCATGGACCGAGAAGCGGTAGCAGCAATCGTCGTGTAC GTGGACGATCTGGTCATTAGCACCAAAGGAAGCACGGAGATGGACGAGCT GCCGGTAGATTTAGCCGAGGACAACAAACTGATGGATTTGGTTGAAGCAA AGTACCACCTGGGATGCCACATCACCCGCGACAGAGAGCGGCGGGAATTG ACATTCCATCACCATCTCTACGCTTTTTCTATGGCGGAGCGTTTCGGTGT TACCAAAACCAGCATGCTTCCGGCGACGGCGGGCAGTAAGGCATTGACCA AAAACGACGAATCAACGATGCCGGAGGAAAGAGCAGAGATAAGGGCGTTC CCCTGCAGAGAGGCAGTGGAGGCATTTATGTGGGCGGCGACCATGGCGCG GCCTGACATCACGCACGCTGATCGCACGGCGGCGAAGTTCTGCCAGAATT CGGGGGTACCCCACAAGAAAGCCGTGCTCAAGATACTACAATATGTGCTG AAGACCACTGACATAAGCATTACCTACAGCCAACAGGACTGCGAGGTCGA GATCGTAGCTTACGCTGACTCGGATTTCGCTCTGTGCGACGACAGCCGAC GCTCAGGTTCAGGTGGATTAGTACTGATGGAGGCACTATCAGCTGACACT CCAGAACCCAGGACGTGACGGCAGCGGGAATGATGGAGGCGGAATATGTC GCACTAGCGGAGATTTCTGTTTCTACGCCAAGTGCAGGCCTTCATCGTGC CGAAGCTGGACTATTACACCGAAACCATCATGGAAGATAACCATGGAGCG AAGAAAATGGCCCAAAACAAGCACAGTAGTAGGAGGACGCGCGACATCGA CGTGAAATATCATATCATTCGCCGTTCTGTTGACGCTGGGCAAGTAGAAC TAGTAAACGTGAAAACGGAGGAGCAGCGCGCGGATATCCTTACTAAGACA CTGGAGATAGGCCCATTC
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Coding sequence (CDS) from alignment at H-paniculata_contig8274:7495..9012+

>mRNA_H-paniculata_contig8274.16294.1 ID=mRNA_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig8274:7495..9012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCGAGAAGCGGTAGCAGCAATCGTCGTGTACGTGGACGATCTGGT
CATTAGCACCAAAGGAAGCACGGAGATGGACGAGCTGCCGGTAGATTTAG
CCGAGGACAACAAACTGATGGATTTGGTTGAAGCAAAGTACCACCTGGGA
TGCCACATCACCCGCGACAGAGAGCGGCGGGAATTGACATTCCATCACCA
TCTCTACGCTTTTTCTATGGCGGAGCGTTTCGGTGTTACCAAAACCAGCA
TGCTTCCGGCGACGGCGGGCAGTAAGGCATTGACCAAAAACGACGAATCA
ACGATGCCGGAGGAAAGAGCAGAGATAAGGGCGTTCCCCTGCAGAGAGGC
AGTGGAGGCATTTATGTGGGCGGCGACCATGGCGCGGCCTGACATCACGC
ACGCTGATCGCACGGCGGCGAAGTTCTGCCAGAATTCGGGGGTACCCCAC
AAGAAAGCCGTGCTCAAGATACTACAATATGTGCTGAAGACCACTGACAT
AAGCATTACCTACAGCCAACAGGACTGCGAGGTCGAGATCGTAGCTTACG
CTGACTCGGATTTCGCTCTGTGCGACGACAGCCGACGCTCAGGTTCAGGT
GGATTAGTACTGATGGAGGCACTATCAGCTGACACTCCAGAACCCAGGAC
GTGAATGGACCGAGAAGCGGTAGCAGCAATCGTCGTGTACGTGGACGATC
TGGTCATTAGCACCAAAGGAAGCACGGAGATGGACGAGCTGCCGGTAGAT
TTAGCCGAGGACAACAAACTGATGGATTTGGTTGAAGCAAAGTACCACCT
GGGATGCCACATCACCCGCGACAGAGAGCGGCGGGAATTGACATTCCATC
ACCATCTCTACGCTTTTTCTATGGCGGAGCGTTTCGGTGTTACCAAAACC
AGCATGCTTCCGGCGACGGCGGGCAGTAAGGCATTGACCAAAAACGACGA
ATCAACGATGCCGGAGGAAAGAGCAGAGATAAGGGCGTTCCCCTGCAGAG
AGGCAGTGGAGGCATTTATGTGGGCGGCGACCATGGCGCGGCCTGACATC
ACGCACGCTGATCGCACGGCGGCGAAGTTCTGCCAGAATTCGGGGGTACC
CCACAAGAAAGCCGTGCTCAAGATACTACAATATGTGCTGAAGACCACTG
ACATAAGCATTACCTACAGCCAACAGGACTGCGAGGTCGAGATCGTAGCT
TACGCTGACTCGGATTTCGCTCTGTGCGACGACAGCCGACGCTCAGGTTC
AGGTGGATTAGTACTGATGGAGGCACTATCAGCTGACACTCCAGAACCCA
GGACGTGA
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