mRNA_H-paniculata_contig8274.16294.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.210e-55 Identity = 132/433 (30.48%), Postives = 217/433 (50.12%), Query Frame = 1
Query: 259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
E P + ++L + A ++ LRH D +QA++Q+ +D+++F+ +PE G + +L+K++YGL QA R WH + F Q A+ C+ R I + V +VV+VDD + S D+ DL + +L + +++ GC RD + L YA + FGV +P G K L++ D+ E+ ++P RE + + MW AT RPDI +A R A++C + H +A L IL YV++T+D+ IT+ + + + + D+D+A RRS SGGLV+ + ++ T E + + LFLRQV F++P+ + EDN GA ++AQN S+ ++ IDV++H IR V ++ + +V++ Q AD LTK L G F
Sbjct: 10 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 201 bits (512), Expect = 4.170e-54 Identity = 132/433 (30.48%), Postives = 217/433 (50.12%), Query Frame = 1
Query: 259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
E P + ++L + A ++ LRH D +QA++Q+ +D+++F+ +PE G + +L+K++YGL QA R WH + F Q A+ C+ R I + V +VV+VDD + S D+ DL + +L + +++ GC RD + L YA + FGV +P G K L++ D+ E+ ++P RE + + MW AT RPDI +A R A++C + H +A L IL YV++T+D+ IT+ + + + + D+D+A RRS SGGLV+ + ++ T E + + LFLRQV F++P+ + EDN GA ++AQN S+ ++ IDV++H IR V ++ + +V++ Q AD LTK L G F
Sbjct: 184 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435) HSP 1 Score: 199 bits (505), Expect = 9.250e-54 Identity = 151/519 (29.09%), Postives = 251/519 (48.36%), Query Frame = 1
Query: 10 EPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGA--VGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLMEA------------LSADTPEPRT*RQRE*-----WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
EP N EA S + +W +A K EM S+ N WT V P D+ I ++K+K + D NV ++ RLV G RQ+ + Y E +P + +++L+ AA D+E+ +D + A++ +++E+++ PE + + GA V +L ++IYGLVQA R W+ + KA F Q+ C+ +K+ +VA +++YVDD+++ +D + L + + DL EA Y LG I RDR RR + Y + ++F + K LP G K L+K T E+R +++ P A+ + M+A RPD+ A A ++ N GV H AV IL+Y+ +T D+ + Y D E+ + Y D+ F D +S +G + + ++ T E E W + F+ + ++P + I DN GA +A+ +RT+ I +++ IR V G +E+ + T+ AD LTK L
Sbjct: 7 EPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKVSG-SSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGVK-LSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRPDVCLAISLAGRYQSNPGVDHWTAVKNILKYLKRTKDMFLVYGG-DKELIVNGYVDASFDTDPDDSKSQTGYVFTLNGGAVSWCSSKQSVVAGSTCEAEYIAASEAANEGVWMKE--------FISDLG--VIPSASGPMK-IFCDNTGAIALAKESRFHKRTKHIKRRFNSIRDLVQVGDIEICKIHTDLNVADPLTKPL 511
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.650e-52 Identity = 146/484 (30.17%), Postives = 241/484 (49.79%), Query Frame = 1
Query: 73 KEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDL-VISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVLME----ALSADTPEPRT*RQRE*WRRNMSH*-RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
+E QS S F KR + I + +L+ K++ K + RLV G+ Q + + ++ P + + +ML + A D EL H D QA+++AP+++ IF+ +PE G + +L+K++YGL QA R W+ + A FEQ A+ CL R + E V +VV+VDD+ + TK D+ DL E + L E K++ GC+ DRE +T Y + ER+GV +P K + + E P R V + +W A + RPDI ++ R A++ + H KA L L Y ++T+ I++ + ++ + +D+A RRS SGG+V+ A + T + T + M+ + LFLRQV F++PK + EDN GA ++A++ S+ ++ IDV++H +R+ VD +VE+++V ++ Q AD LTK L
Sbjct: 127 REAKQSEHSVQFMDAAKRERIDNCIKSKLLFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPTVASSSVRMLAALACELDLELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKE--RCDQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIPLPTTWKLWDFDADEPSVEH-------PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAADRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6H5K2R1_9PHAE (Integrase catalytic domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2R1_9PHAE) HSP 1 Score: 200 bits (508), Expect = 8.450e-52 Identity = 131/433 (30.25%), Postives = 217/433 (50.12%), Query Frame = 1
Query: 259 EVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCE-VEIVAYADSDFALCDDSRRSGSGGLVL------------MEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTLEIGPF 1518
E P + ++L + A ++ LRH D +QA++Q+ +D+++F+ +PE G + +L+K++YGL QA R WH + F Q A+ C+ R I + V +VV+VDD + S D+ DL + +L + +++ GC RD + L YA + FGV +P G K L++ D+ E+ ++P RE + + MW AT RPDI +A R A++C + H +A L IL YV++T+D+ IT+ + + + + D+D+A RRS SGGLV+ + ++ T E + + LFLRQV F++P+ + EDN GA ++AQN S+ ++ IDV++H IR V ++ + +V++ Q A+ LTK L G F
Sbjct: 705 ETYAPTVAVSSVRLLAAMACEQNLSLRHFDIKQAFVQSDLDEDVFMRLPEGCGRLSGMIVKLNKSLYGLKQASRQWHSHLARCLICLGFIQCMADTCVFRLIEEGRVVVTLVVHVDD-IFSIGEEERCDQFGRDLNTMVPVKNLGDLRWYSGCFYERDWDAGTLKISQQTYAEELGMEFGVEYGKEIPLPVGLK-LSEFDQDE------EVVSWPFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKE-------VLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHAEFLTKALHAGDF 1122
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: V5ZTC4_9BRAS (Hypothetical transposable element-related protein (Fragment) n=1 Tax=Boechera divaricarpa TaxID=115915 RepID=V5ZTC4_9BRAS) HSP 1 Score: 198 bits (503), Expect = 4.420e-51 Identity = 148/523 (28.30%), Postives = 248/523 (47.42%), Query Frame = 1
Query: 1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEY--REFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGV--TKTSMLPATAGSKALTKNDESTMPEERAEIRAF---PCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSG-----------------GLVLMEALSADTPEPRT*RQRE*WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTK 1497
L +P + REA S +W K +EE QS++ N W V+ PK + I ++K K + NV +++ RLV G Q + Y E +P + + +++ A D EL +D + A++ ID+ I++ PE + + V +L+K+IYGL QA R W+ K + FE + C+ +K + + +V+YVDD++++T + E+ L ++ ++ DL EA + LG I RDR + L Y + +RFG+ K P G K S P+E EI+ P AV + M+A RPDI + ++ N G+ H KA ++++Y+ +T D +TY + D +EI+ Y+DSDFA C DSR+S SG LV ++A+ + W +N F+ Q+ I L Y DN A + S+ +++ ID+K+ +++ + +G + + ++ T AD LTK
Sbjct: 824 LKDDPVSFREAMGSSNSEKWIKGMEEEYQSMLDNKVWDLVELPKGQKPIGCKWIFKTKRDSSGNVQRYKARLVAKGYTQKEGIDYKETFSPVSSKESFRTIMALVAHYDLELHQMDVKTAFLNGDIDETIYMEQPENFVSHDSKKMVCKLNKSIYGLKQASRQWYHKFHKVIISFGFEVNLVEDCVYQKFSGSKLIF-LVLYVDDILLATNDINMLHEIKNFLKDNFEMKDLGEASFVLGIQIIRDRNQGILRLSQKNYIDKVLKRFGMHDCKPGDTPVAKGDKFCL----SQCPKENLEIQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGVLGRYLSNPGLDHWKAAKRVMRYLQRTKDYMLTYQRSD-NLEIIGYSDSDFAGCQDSRKSTSGYVFLLAGGAISWRSAKQSLVASSTMAAEFVAVFEASNQGLWLKN------FVTRLQILEGIERPLKIYC-----DNKSAVLYSNKNRSTTKSKFIDIKFLVVQERIQSGDISIEHIGTNSMVADPLTK 1329
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A0V1FL71_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1FL71_TRIPS) HSP 1 Score: 197 bits (500), Expect = 4.440e-51 Identity = 149/495 (30.10%), Postives = 242/495 (48.89%), Query Frame = 1
Query: 55 QWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCL--LRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVT-----KTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLME--ALSADTPEPRT*R--QRE*WRRNMSH*-RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
+W KA EE+ S N W P K I + ++K K +D + K + RLV G Q+ + + + P G + + LLS AA + E+ +D A++ +++EI++ +P + RL K+IYGL QA R W+ + ++ + PC+ LRK + A+ VYVDDL+I + + +EL + L E K+ DL +A + LG I +D E L+ Y M RF ++ KT + P SKA+ + EE ++ A P REAV ++ + RPDI HA ++FC N G H AV +I +Y+ T + Y Q E Y+DSD+ D RRS SG +V A++ + + RT E +SH + +LR +Q+ + + + T++ DN GA ++ + SS RTR ID++YH ++ + G++E+ + + + AD+ TK L
Sbjct: 392 EWLKAINEELASHRENQSWEPAVLPPHKKAIKSKWVFKTKYKEDGTIEKRKARLVAKGYSQLQGIDFEDTFAPTLGYSSLRYLLSLAAKYNLEVDQMDVVTAFLNPSLNEEIYMELPSGVGDENNKYCRLRKSIYGLKQASRAWYGMLDETLRSFGLNRLKNEPCIYFLRK---NKTFLAVGVYVDDLLILSNNESSKNELKMALCERFKMKDLGKAHWCLGIRIVQDVENGTLSIDQEQYIEEMLHRFRMSDCKGVKTPLDPNQVLSKAMMPRSD----EEIKQMHAVPYREAVGCLVYLSQSCRPDICHAVGIVSRFCDNPGKAHWTAVKRIFRYLKYTKAAKLVYRQ--IENAFTVYSDSDWGNDRDDRRSISGCVVCHSGAAIAWTSKKQRTVALSTTEAEYMALSHAAKETAWLRSLQSEL--EKESSKPTLLCDNSGAVSISTGQSSSARTRHIDIRYHFVKEKIQEGEIEMRQIPSADNAADMFTKAL 875
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A6A3LVG8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3LVG8_9STRA) HSP 1 Score: 197 bits (502), Expect = 5.040e-51 Identity = 150/512 (29.30%), Postives = 255/512 (49.80%), Query Frame = 1
Query: 1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREFPGA--VGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCL-LRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTK-TSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLME--ALSADTPEPRT*RQR--E*WRRNMSH*-RRFLFLRQVQAFIVPKLDYY--TETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
+ A+P A + + WR A E S+ +NG WT + P K ++ L+K+K N D ++ +++ RLV G +Q+ + E+ P + ++LL+ A ++D E+ +D + A++ +++E+++ P+ V +L K++YGL QA R WH +T + FE+ C+ +R+ R + + +YVD+L++ +K M++L + K DL E + LG ITRDR R+L + S+ ++F + + TA K LTK E A++ P R+AV + M+ +RPD+ A + ++F N G H +AV + ++Y+ T + + +S V + AY DSD+A C+D RRS SG + ++ ++ + + R Q E ++H R LFLRQ+ + +L Y I EDN +A+N R + IDV+YH IR V V L V +++ AD LTK L
Sbjct: 586 IAADPQTYDRAVSGPDACHWRGAINNEAASLKTNGTWTLMPLPSGKRALSCRWLFKKKYNSDGSIERYKARLVVIGCQQVKYRDFDEIFAPVIRLESLRVLLAIACIEDLEVHQMDIETAFLNGTLNEEVYMTQPQGMMTAGKQEWVCKLHKSLYGLKQAPRAWHQALTSYLTQEGFEKLSCESCIYIRRC--RGELEIVAIYVDNLLLLSKSFGVMEKLKQSIGSAFKANDLGEVSFLLGLKITRDRRARKLWINQQSNVDSILQKFNMEHGAGVATPTAAGKKLTKQQAPATEEATAKMLKKPFRQAVGSLMYQMIGSRPDMAFAIQDTSRFLSNYGEAHWQAVKRCIRYLKATRNYGLEFSGN--AVVLRAYTDSDYAGCEDDRRSVSGYVTMIGNCTVTWSSRKQRIVAQSTAEAEYVALAHCTREVLFLRQL----LKELGYEQAATVINEDNQACIAIAENPAQHSRVKHIDVRYHFIREHVQHKDVNLQYVVSKDNVADALTKGL 1089
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 191 bits (486), Expect = 5.050e-51 Identity = 147/526 (27.95%), Postives = 257/526 (48.86%), Query Frame = 1
Query: 1 LPAEPNNRREAQASLEWVQWRKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYR--EFPGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPE------ERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDCEVEIVAYADSDFALCDDSRRSGSGGLVLMEA------------LSADTPEPRT*RQRE*-----WRRNMSH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
L +P + + + S +W KA K+EM+S+ NG W V+ PK I ++K K + N+ +++ RLV G Q + Y E +P + +++++ A D EL +D + A++ ID+ I++ PE + + V RL ++IYGL QA R W+ K + F+++ + C+ K + + +V+YVDD+++++ + E L+ + DL A + LG I RDR R L Y + RFG++ + G + K D+ ++ + E+ ++ FP AV + M+A RPDI + ++ N G+ H K ++++Y+ +T D +TY ++ +EIVAY+DSDFA C DSRRS SG + ++ +++ T E E W RN F+ Q++ IV ++ I DN A+ ++N SS +++ ID+K+ +++ V + QV + ++ T AD LTK L
Sbjct: 3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKFSGSKFII-LVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYA-----PGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTY-RRSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLRN--------FVTQLR--IVDGIEKPLR-INCDNKAAELYSKNNRSSSKSKHIDIKFLVVKERVQSLQVSIEHISTNSMIADPLTKGL 510
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Match: W7TIM1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIM1_9STRA) HSP 1 Score: 197 bits (500), Expect = 7.000e-51 Identity = 145/495 (29.29%), Postives = 243/495 (49.09%), Query Frame = 1
Query: 61 RKAEKEEMQSVISNGFWTQVKRPKDKMVITTMMLYKRKINQDSNVAKHQGRLVTHGNRQINDLHYWEVSTPAPGAVTTKMLLSAAAVKDWELRHVDFQQAYIQAPIDQEIFIAIPEEYREF----PGAVGRLDKAIYGLVQAGRYWHMKITYDFKAK*FEQSHANPCLLRKIMDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGCHITRDRERRELTFHHHLYAFSMAERFGVTKTSMLPATAGSKALTKNDESTMPEERAEIRAFPCREAVEAFMWAATMARPDITHADRTAAKFCQNSGVPHKKAVLKILQYVLKTTDISITYSQQDC-EVEIVAYADSDFALCDDSRRSGSG-GLVLMEALSADTPEPRT*RQRE*WRRNM--------SH*RRFLFLRQVQAFIVPKLDYYTETIMEDNHGAKKMAQNKHSSRRTRDIDVKYHIIRRSVDAGQVELVNVKTEEQRADILTKTL 1503
RKA E Q+ + NG W PK + I++ + K +Q+ + + + R + G Q Y P T +++L+ A + D EL ++D + AY+Q+ +++++++ P Y ++ V RL K++YGL Q+GR WH KI F+ F S A+PCL K + IV+YVDDL+I++ +D+ ++ + + DL E + LG I R+RE+R + Y + +FG+ + T LTK D + ++ V + ++AA + RPDI A ++ K Q S H A ++L+Y+ T D+ I Y+ +V +AD+D+A D+RRS SG L +T + + +Q + S + +++RQ+ + K D T I+EDN M N + ++T+ IDV+YH +R V++ +VELV + T+ Q ADILTK L
Sbjct: 219 RKARDAEYQAHMKNGTWELTTLPKGERCISSGWVDSDKRDQNGVIVRRKARFIAKGYSQEFGYDYLHTYAPVASITTIRLILAIACILDLELDNMDVETAYLQSDLEEKVYVKQPIGYEQYGLNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGEMLVIVLYVDDLIITSNSREMVDKFKQAISREFSMKDLKELDWILGMAIKRNREKRVMEISQTAYIDMVLNKFGMADCRPV-LTPMEGTLTKMDGKDAKPDNEYMKL------VGSLLYAALVTRPDIAFAVQSLGKHLQGSNEEHWIAAKRVLRYLKGTRDVGIRYTGNTTGSFTLVGFADADYAGDKDNRRSTSGYAFTLSHGDDINTIDWKAKQQEVVALSSAESELISACSATQSAVYIRQLLTDLGFKQDEPT-VIVEDNQACIAMGNNPITHKKTKHIDVRYHFVREKVESKEVELVYIPTQHQLADILTKPL 705 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8274.16294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig8274.16294.1 >prot_H-paniculata_contig8274.16294.1 ID=prot_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp MDREAVAAIVVYVDDLVISTKGSTEMDELPVDLAEDNKLMDLVEAKYHLGback to top mRNA from alignment at H-paniculata_contig8274:7495..9012+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig8274.16294.1 ID=mRNA_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1518bp|location=Sequence derived from alignment at H-paniculata_contig8274:7495..9012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig8274:7495..9012+ >mRNA_H-paniculata_contig8274.16294.1 ID=mRNA_H-paniculata_contig8274.16294.1|Name=mRNA_H-paniculata_contig8274.16294.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig8274:7495..9012+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |