mRNA_H-paniculata_contig8253.16271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8253.16271.1
Unique NamemRNA_H-paniculata_contig8253.16271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI)

HSP 1 Score: 159 bits (403), Expect = 6.060e-41
Identity = 87/251 (34.66%), Postives = 146/251 (58.17%), Query Frame = 1
Query:    1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
            E W+ + + EMRS++ NG WE + +P+ +  V  K +Y+ K    G +E++K RLVA+G  Q +GV + E Y+P+  + ++R LL   AA+D EL   D + A L  +++EE+Y++ P+G+    P  V   KK IYGL QA + W+ K   ++  I F  S +D  +   ++DGE  + VVV V +IL  AK    +      L  +F +++LG A++++G  +TR+R+AR +KL Q    + +   +G+
Sbjct:  574 EIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKRDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQKKLTKELLGRYGL 823          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834S5H9_9PLEO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834S5H9_9PLEO)

HSP 1 Score: 153 bits (387), Expect = 9.550e-40
Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
            WK A E+E+R++V NG WE++  P+   +V  K ++  K   DG +E++K RLVA+G  Q  G+ YTE ++P     ++R+ LAT A +  E   +D + A  E+ + E++Y+  P G     G V +  +++YGL QAG+ WN+     ++ I F QS ADPC+      G   + ++V+V +I   AK  + + WF   L  RF  KNLG+    +G  VTR+R  + + LDQ  +++ + + +G+
Sbjct:   99 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRANKAIYLDQQQYLETVLDKYGI 343          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI)

HSP 1 Score: 155 bits (393), Expect = 1.380e-39
Identity = 85/238 (35.71%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
            E W+ + + EMRS++ NG WE + +P+ +  V  K +Y+ K    G +E++K RLVA+G  Q +GV + E Y+P+  + ++R LL   AA+D EL   D + A L  +++EE+Y++ P+G+    P  V   KK IYGL QA + W+ +   ++  I F+ S +D  +   +VDGE  + VVV V +IL  A     +      L  +F +++LG A++++G  +TR+R+AR +KL Q
Sbjct:  849 EIWRQSMDDEMRSLLENGTWELVPKPEGVKPVPMKWVYKIKQDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGE-RVWVVVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQ 1085          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A6J4L7Z3_9CYAN (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=uncultured Leptolyngbya sp. TaxID=332963 RepID=A0A6J4L7Z3_9CYAN)

HSP 1 Score: 152 bits (385), Expect = 4.350e-39
Identity = 86/238 (36.13%), Postives = 141/238 (59.24%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGA---VGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
            WK A ++EM S+  NG W    +P  +  +  K +Y+ K    G +E+YK RLVA+G  Q EG+ Y E ++P+  +A++R LLA  AA+D EL   D + A L  D++E +Y++ PEG+  V G    V   +K++YGL QA + WN +   ++  + F  S ADP +      G   + ++V+V +IL  AK+ A +E   T+L   F +++LG+A++++G  + RNR+A+ LK+ Q
Sbjct:  123 WKLAMDEEMASLHENGTWTLEQQPVGVRPIPVKWVYKVKRDALGNIERYKARLVAKGFMQKEGIDYNEVFAPVSKHATLRTLLALVAAEDLELHQLDIKTAFLNGDLEETIYMQQPEGY--VEGGRNMVCHLRKSLYGLKQAPRAWNTRLKQELEGMGFSASEADPGLFTAKYKGST-IYILVYVDDILVAAKNLADVEHIKTRLTTIFDVRDLGEAEYFLGMSLDRNRQAKTLKMSQ 357          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834SA62_9PLEO (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834SA62_9PLEO)

HSP 1 Score: 153 bits (387), Expect = 4.830e-39
Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
            WK A E+E+R++V NG WE++  P+   +V  K ++  K   DG +E++K RLVA+G  Q  G+ YTE ++P     ++R+ LAT A +  E   +D + A  E+ + E++Y+  P G     G V +  +++YGL QAG+ WN+     ++ I F QS ADPC+      G   + ++V+V +I   AK  + + WF   L  RF  KNLG+    +G  VTR+R  + + LDQ  +++ + + +G+
Sbjct:  218 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRDDKAIYLDQQQYLETVLDKYGI 462          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A834VLD2_9PLEO (Integrase catalytic domain-containing protein n=16 Tax=Pyrenophora tritici-repentis TaxID=45151 RepID=A0A834VLD2_9PLEO)

HSP 1 Score: 153 bits (387), Expect = 8.940e-39
Identity = 85/248 (34.27%), Postives = 141/248 (56.85%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HVPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
            WK A E+E+R++V NG WE++  P+   +V  K ++  K   DG +E++K RLVA+G  Q  G+ YTE ++P     ++R+ LAT A +  E   +D + A  E+ + E++Y+  P G     G V +  +++YGL QAG+ WN+     ++ I F QS ADPC+      G   + ++V+V +I   AK  + + WF   L  RF  KNLG+    +G  VTR+R  + + LDQ  +++ + + +G+
Sbjct: 1079 WKEAIEEEIRTLVGNGTWEELIPPQGANLVTTKWVFTVKLKVDGTIERFKARLVARGFSQQHGIDYTETFAPTVRMDTLRLFLATVAKQGMECWQWDIKNAFTESYLKEDIYLTTPAGVKVKKGNVLKVLRSLYGLKQAGRDWNLLLKGFLTEIGFTQSLADPCLFTHKGRG---ISLLVYVDDIAAAAKLTSDLAWFDEMLLTRFNSKNLGEIRKILGVRVTRDRANKAIYLDQQQYLETVLDKYGI 1323          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A7D9HXK4_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HXK4_PARCT)

HSP 1 Score: 153 bits (386), Expect = 1.130e-38
Identity = 83/251 (33.07%), Postives = 150/251 (59.76%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*H--VPGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCM-LKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETFGV 750
            WK A + E  S++ N  WE ++ PK   VVG+K +++ K  ++G +++YK RLVAQG  Q EGV Y+E +SP+  N ++R LLA + AK+ E+   D + A L+ ++ EE+Y+  P+G+ +  +P  V + KK+IYGL Q+ +CWN      + +  ++Q  +DPC+ +K I D    + + +HV +IL  + D   +      +G +FK+ ++G+    +G  + R+R+  ++ + Q  ++Q + + FG+
Sbjct:  738 WKQATDSEYNSLIENETWELVSLPKGKNVVGSKWVFKVKRDENGCVQRYKARLVAQGYTQAEGVDYSEVFSPVVRNTTIRSLLALSNAKNWEVHQMDVKTAFLQGNL-EEIYMRQPDGYVNKELPNHVCKLKKSIYGLKQSARCWNNAIDTFLKSSGYKQMESDPCLYMKSIRDQNGVIILSIHVDDILLFSNDSCMLSEEKKLIGLKFKVDDMGEVKHVLGMVIRRDRRKGKMMISQSTYLQGILKRFGM 987          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A2N9IT45_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IT45_FAGSY)

HSP 1 Score: 151 bits (382), Expect = 1.780e-38
Identity = 88/248 (35.48%), Postives = 144/248 (58.06%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV--PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETF 744
            W +A  +E  SM  NGVW  + R + M VVG K +++RK    GK+EK+K RLVA+G  Q  GV + E +SP+    S+R +L+  A  D EL   D + A L  D++E+VY+E PEGF        V + +K+IYGL QA + WN+KF + ++ + F Q+ ++PC+  + +  +V + + ++V +IL    D   ++     L   F++K+LG+A + +G  + R+R  R+L L Q  ++  + E F
Sbjct:  346 WISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 592          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A1Y1ISB6_KLENI (Putative retrotransposon protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ISB6_KLENI)

HSP 1 Score: 149 bits (377), Expect = 3.420e-38
Identity = 86/240 (35.83%), Postives = 144/240 (60.00%), Query Frame = 1
Query:    1 EYWKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV-PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEIL--THAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQ 711
            E W+ + ++EMRS++ NG+WE + +P+ +  V  K +Y+ K    G +E+YK RLVA+G  Q +G+ + E Y+P+  + ++R LLA  AA+D EL   D + A L  +++E +Y++ P+G+    P  V   K+++YGL QA + W ++  +++  + F  S AD  +    VDGE E+ ++V V +IL  T  KDR         L   F ++NLG+A +++G  + R+R+AR LKL Q
Sbjct:  107 ELWRLSMDEEMRSLLENGIWELVEKPEGVKPVPMKWVYKIKRDALGNVERYKSRLVAKGYLQKQGIDFQEVYAPVSKHTTLRALLAVLAARDLELHQLDVKTAFLNGELEETIYMKQPQGYEQGGPEMVCLLKRSLYGLRQAPRAWYLRLKEELGLLEFGASVADAALFVGEVDGE-EVFLLVWVDDILIATRGKDRVAK--MKAHLARTFDMRNLGEATYFLGMELARDREARTLKLTQ 343          
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Match: A0A2N9I256_FAGSY (Uncharacterized protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I256_FAGSY)

HSP 1 Score: 151 bits (382), Expect = 3.870e-38
Identity = 88/248 (35.48%), Postives = 144/248 (58.06%), Query Frame = 1
Query:    7 WKAAEEQEMRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGLRQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*HFDAEQAILEADIDEEVYIEIPEGF*HV--PGAVGEPKKAIYGLVQAGQCWNIKFCDDMSAI*FEQSRADPCMLKKIVDGEVEMGVVVHVSEILTHAKDRATMEWFATQLGGRFKLKNLGDADFYMGEHVTRNRKARELKLDQPMHVQLMAETF 744
            W +A  +E  SM  NGVW  + R + M VVG K +++RK    GK+EK+K RLVA+G  Q  GV + E +SP+    S+R +L+  A  D EL   D + A L  D++E+VY+E PEGF        V + +K+IYGL QA + WN+KF + ++ + F Q+ ++PC+  + +  +V + + ++V +IL    D   ++     L   F++K+LG+A + +G  + R+R  R+L L Q  ++  + E F
Sbjct:  522 WISAMNEEFDSMGKNGVWRLVKRHEGMKVVGCKWIFKRKRDVSGKVEKFKARLVAKGYTQEYGVDFEETFSPVVRIQSIRAILSLVAFFDFELYQMDVKTAFLNGDLEEDVYMEQPEGFISKGDENKVCKLEKSIYGLKQASRQWNLKFHESITMMGFMQNSSEPCVYVRKIHDKVVI-LTLYVDDILLAGNDVDMLDEVKQWLFKTFEMKDLGEASYILGIKIERDRVNRKLSLSQENYIDTLLEKF 768          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8253.16271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1IVX6_KLENI6.060e-4134.66Integrase catalytic domain-containing protein (Fra... [more]
A0A834S5H9_9PLEO9.550e-4034.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1IQX0_KLENI1.380e-3935.71Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
A0A6J4L7Z3_9CYAN4.350e-3936.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A834SA62_9PLEO4.830e-3934.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A834VLD2_9PLEO8.940e-3934.27Integrase catalytic domain-containing protein n=16... [more]
A0A7D9HXK4_PARCT1.130e-3833.07Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A2N9IT45_FAGSY1.780e-3835.48Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A1Y1ISB6_KLENI3.420e-3835.83Putative retrotransposon protein n=1 Tax=Klebsormi... [more]
A0A2N9I256_FAGSY3.870e-3835.48Uncharacterized protein n=4 Tax=Fagus sylvatica Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8253contigH-paniculata_contig8253:6847..7596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog3827.XP_004509218.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37RIF@33090,3GBWZ@35493,4JT11@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size750
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8253.16271.1prot_H-paniculata_contig8253.16271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8253 6877..7134 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.7690275-UTR-H-paniculata_contig8253:6846..68761622931035.7690275-UTR-H-paniculata_contig8253:6846..6876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8253 6847..6876 +
1691481560.3452833-UTR-H-paniculata_contig8253:6846..68761691481560.3452833-UTR-H-paniculata_contig8253:6846..6876Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8253 6847..6876 +
1622931035.849337-UTR-H-paniculata_contig8253:7134..75961622931035.849337-UTR-H-paniculata_contig8253:7134..7596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8253 7135..7596 +
1691481560.3701253-UTR-H-paniculata_contig8253:7134..75961691481560.3701253-UTR-H-paniculata_contig8253:7134..7596Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8253 7135..7596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931035.818031-CDS-H-paniculata_contig8253:6876..71341622931035.818031-CDS-H-paniculata_contig8253:6876..7134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8253 6877..7134 +
1691481560.3578656-CDS-H-paniculata_contig8253:6876..71341691481560.3578656-CDS-H-paniculata_contig8253:6876..7134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8253 6877..7134 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8253.16271.1

>prot_H-paniculata_contig8253.16271.1 ID=prot_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=86bp
MRSMVNNGVWEQIARPKDMLVVGAKMLYERKASKDGKMEKYKCRLVAQGL
RQIEGVHYTEKYSPMPANASMRMLLATAAAKDGEL*
back to top

mRNA from alignment at H-paniculata_contig8253:6847..7596+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8253.16271.1 ID=mRNA_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=750bp|location=Sequence derived from alignment at H-paniculata_contig8253:6847..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGTATTGGAAAGCGGCGGAAGAGCAAGAGATGCGTAGTATGGTAAACAA CGGAGTATGGGAGCAGATAGCCCGACCAAAGGACATGCTTGTGGTGGGAG CGAAGATGCTTTACGAACGCAAGGCCAGCAAGGACGGCAAGATGGAAAAG TACAAATGTAGACTTGTCGCCCAGGGCCTGCGGCAGATCGAAGGGGTACA CTACACCGAGAAGTACTCACCGATGCCGGCGAACGCATCCATGCGGATGC TCTTGGCGACCGCAGCGGCGAAGGACGGGGAGCTGTGACATTTCGACGCA GAACAGGCGATTCTGGAGGCGGACATTGATGAGGAGGTGTACATCGAAAT CCCCGAAGGTTTCTAACATGTCCCGGGAGCAGTGGGTGAGCCAAAGAAGG CAATCTACGGGCTCGTTCAGGCGGGGCAATGCTGGAACATCAAGTTCTGC GACGACATGTCGGCAATTTAGTTCGAGCAGTCAAGGGCAGACCCGTGCAT GTTGAAGAAGATTGTCGACGGAGAGGTGGAAATGGGGGTTGTCGTGCACG TGAGTGAAATTCTTACCCACGCAAAGGACCGCGCGACGATGGAGTGGTTC GCAACCCAGCTAGGGGGAAGGTTCAAGCTGAAGAACTTAGGTGATGCCGA CTTCTACATGGGTGAACATGTTACCCGAAACAGGAAGGCGCGCGAGCTGA AACTTGATCAACCCATGCACGTGCAGTTGATGGCGGAAACATTCGGTGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig8253:6847..7596+

>mRNA_H-paniculata_contig8253.16271.1 ID=mRNA_H-paniculata_contig8253.16271.1|Name=mRNA_H-paniculata_contig8253.16271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at H-paniculata_contig8253:6847..7596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTAGTATGGTAAACAACGGAGTATGGGAGCAGATAGCCCGACCAAA
GGACATGCTTGTGGTGGGAGCGAAGATGCTTTACGAACGCAAGGCCAGCA
AGGACGGCAAGATGGAAAAGTACAAATGTAGACTTGTCGCCCAGGGCCTG
CGGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCGATGCCGGC
GAACGCATCCATGCGGATGCTCTTGGCGACCGCAGCGGCGAAGGACGGGG
AGCTGTGAATGCGTAGTATGGTAAACAACGGAGTATGGGAGCAGATAGCC
CGACCAAAGGACATGCTTGTGGTGGGAGCGAAGATGCTTTACGAACGCAA
GGCCAGCAAGGACGGCAAGATGGAAAAGTACAAATGTAGACTTGTCGCCC
AGGGCCTGCGGCAGATCGAAGGGGTACACTACACCGAGAAGTACTCACCG
ATGCCGGCGAACGCATCCATGCGGATGCTCTTGGCGACCGCAGCGGCGAA
GGACGGGGAGCTGTGA
back to top