mRNA_H-paniculata_contig8245.16265.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8245.16265.1
Unique NamemRNA_H-paniculata_contig8245.16265.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8245.16265.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8245contigH-paniculata_contig8245:484..4481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPOC1 centriolar protein homolog A
Ec32 orthologEc-21_003690.1
Exons4
Model size1022
Cds size1020
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8245.16265.1prot_H-paniculata_contig8245.16265.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8245 484..4479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931034.7183204-CDS-H-paniculata_contig8245:483..6511622931034.7183204-CDS-H-paniculata_contig8245:483..651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 484..651 +
1691481559.9882588-CDS-H-paniculata_contig8245:483..6511691481559.9882588-CDS-H-paniculata_contig8245:483..651Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 484..651 +
1622931034.7327127-CDS-H-paniculata_contig8245:1881..21951622931034.7327127-CDS-H-paniculata_contig8245:1881..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 1882..2195 +
1691481559.9978583-CDS-H-paniculata_contig8245:1881..21951691481559.9978583-CDS-H-paniculata_contig8245:1881..2195Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 1882..2195 +
1622931034.7491512-CDS-H-paniculata_contig8245:3139..33671622931034.7491512-CDS-H-paniculata_contig8245:3139..3367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 3140..3367 +
1691481560.007215-CDS-H-paniculata_contig8245:3139..33671691481560.007215-CDS-H-paniculata_contig8245:3139..3367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 3140..3367 +
1622931034.7677054-CDS-H-paniculata_contig8245:4169..44791622931034.7677054-CDS-H-paniculata_contig8245:4169..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 4170..4479 +
1691481560.0267751-CDS-H-paniculata_contig8245:4169..44791691481560.0267751-CDS-H-paniculata_contig8245:4169..4479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8245 4170..4479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8245.16265.1

>prot_H-paniculata_contig8245.16265.1 ID=prot_H-paniculata_contig8245.16265.1|Name=mRNA_H-paniculata_contig8245.16265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=340bp
CVVLCSVLLCSILQVWDARSHQLLQHYPAHDSEVTSISFHNSGNFLLSSS
TDSSLKIWDLREGRLLYTLKGHHGPATASCFSADGTRFASGGENGLVVSW
KSKLFARFGFGVSRASGGTSGVEPAAAGKARVRARGGTGVAGSKATGGGR
AALSLRPTNARVCTAQPRQSPRSSISGVRRSGVYTRGGREDGGGGDGGGR
DTPGVSCRGGGGVNSSLVMEGTRVTNVPTGDEGDRFEDDQQRHQQHEQYH
ASFGFQDVGNDSRAATTASASMTAPLPPPPTPPPPPMASSTRSRAEQSAA
DASTANWANANSNWPDAPTMSAGARESDTPGLEYGWNIGR
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mRNA from alignment at H-paniculata_contig8245:484..4481+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8245.16265.1 ID=mRNA_H-paniculata_contig8245.16265.1|Name=mRNA_H-paniculata_contig8245.16265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3998bp|location=Sequence derived from alignment at H-paniculata_contig8245:484..4481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTGTGTTATGTTCTGTTCTGTTATGTTCTATTCTGCAGGTGTGGGA
TGCCCGGTCTCACCAATTATTGCAGCACTACCCTGCGCACGACTCGGAAG
TAACGTCCATCAGCTTTCACAACTCCGGGAACTTCCTTCTATCGTCGTCC
ACCGATTCTTCACTCAAGGTTTGTATTTTTTTTTTCGTTTCTAATTCAGT
TATAGGGTCACAGATTATTTTGTGCGGAATAGTGATTGATGAAAGGGAAA
ATATTAAAGATCCGATTTTTTCCGGGAAAAAAATACTCCCCATGGCATGA
CACTAACAATAACAAATGAGTGCTTTTTTGTATCCAAGGCAAAGCTGTGG
GAACTTCGAATTCTGGAAAAATGGTCATTATAAAGTAACGTCCTCCTCCC
GAAATGGTCAGATTTCAACATATACATGTTATGTACAATTTTTTTTTTTT
ACCTCAAAAAGTGGTCGCAATTTAGTAGTGACGACCCTTTGCTCTTTCGA
TCGATTAAAGCGGCCTCGAAAGAAGCATTGAATCTAACCGTTATTAAATA
TGGAGCGTATGAAAGCAGTCATCGTTGTGCCCAGGACCGTGCGACCTTGA
TCCCTGACCATACCGTCATGTACCAAAGGTGCTGTCCCTACTGGATGAGA
TTGATCGTTGTTTGAATAACGGCGCACGAAGAGAACGATGAATTCCTTCC
CCTGCAATCGTGTCGTAAGGCGTGTTTGTTGTCATTCTCCACCCCCCCAC
ACTTTTGTGTTTTGCATATGAGGTGAGGCATTTTTGTGGACACCGAACAT
CCGCCTTCCCAAGGTTTGATTAATTCACCCAGTTTATGGGAATTGTGATG
ATAACAGATACTTTTGGAATAGTGTTTTTTCCCTCGCCAGGTCGATGTTG
TTAAATTATTCGGTATATAATTGTGTATTTTGGGATTGGGATACCGTGCG
TGACATCTGTCTGTTGACGAGACAAGATTTGTGGGAAAACCATGCTGCTA
CACCCGTTTCTTTGAGAAGAGCAATTGTTCCGAGGTCGCATGCTTTGAGG
CGCAGTAAAGATTAAGTCCGTCAGAGACGTGCAACATTGTTTTATAGACA
AGGAATATTTTCACGGGCATTCGAATTTGCTAACGAAATGTTCTGGAACA
GTTTTCCAACTCTGTACTCTAGTGAGTTACTCACTAACGAATCTTTTTTT
CTTTTTTTTTTATCATGGGCGTGGGAAGTACGTGAAATCTGCAATGGAAG
TGAGAGCCGCAGTGTGTAACATAAATTATCCAGTGTAGAGGGAAACCGTC
CCGCCTGCACCGGGGTGATTGATGGAATGACCCACTTACATTCTTTTGTA
TCTTATGATCACTTGGAAAAATACCGAAAACAACAACAAAACGCACAGAT
ATGGGATCTTCGCGAAGGACGGCTGCTTTATACCCTGAAAGGACATCATG
GGCCCGCGACCGCTAGCTGCTTCAGCGCGGACGGCACACGGTTCGCCTCC
GGGGGAGAGAACGGGCTCGTTGTTTCGTGGAAGAGCAAACTCTTCGCTCG
CTTTGGCTTCGGCGTTAGCCGCGCCAGCGGCGGTACCAGCGGCGTGGAGC
CGGCGGCAGCGGGAAAGGCAAGGGTTCGCGCTCGAGGAGGAACAGGAGTG
GCGGGGTCCAAGGCGACCGGCGGTGGGCGTGCGGCGCTGAGTCTACGGCC
GACAAACGCGCGGTAAGACGCGTTACTGCTGAGCGGAGGGAGGGTGGGAG
ATGGGAAATGGGAGGTGTGGGCTAATGTTTTGCGTGCCGTAGTTATTAGA
CTATGGACGATGCGTCCTCAAGAGGCAAGGAGCTTTCCGGGAGGCACGGG
GAGGGGGTACTAGTACGTGATGTATGTAACTTGCGAACCCTTCCTGACTT
GCCAAGCTATTTTGTTGATTTTGTCATTATGTGTAGGTTCAGTGGTTCTT
GAGTTTATGTACATGTTCTGAGTCCTATAGCCTAAAATAAGCAAGTAATC
GTAGCCAAGTGTTGGTGATGAGTGAAATAGAACGTATATGTATCGGGAGG
GGGAGGGTCAACATGCATGACCACAAGAAAAGCTGCATGCCTCAAAGAGT
ACATATGGACTAATCACGAGAAGGGGGAGCATTTTTCAGATCGTGCGTGT
AAGTGTTTTGAATGCTTGAACGTGTTGTGTTTTGAATTGTGCCTGTCACC
CTGAATATCCCTTTCAACAAAATAACACCACGGCAATTACCATTTGGCTG
TCGACAGCACACCCATCACGCGATCGCTGAATCGTCGACAAACTTTCTGG
AAAACGCCGACGATGATGGTGATGTCATCATTGAATTCTGCAAATGGAGG
CCCTTAATCATGTAGAGTAACTCGGTTGATGGGCCAGCGAGAAGACCCTA
TTCATAACCCTTTTGATAGCTGCTCGACACTTCCGTGCCCATGCCGTGTA
TGTATGTCTCCACACGTCGGACGACTAATTAATCGTTGCTGATCAACTGG
TGCGACGGAATTCCGAAAATGGACTCAACTACCAGTCGACTGGTGTGAGT
AGGCACTTGACTAATAAAAAACACACAACGACTATGACTGACTAAAATGG
CCATGACTGTTAGTTAGTCATAGTCTCCTCCCCCCTTCGCACCCCTGGTA
AATCAGAGTCTGCACTGCACAACCAAGGCAGTCTCCTAGGTCCTCGATAT
CGGGAGTGCGCCGTTCTGGAGTGTACACACGGGGAGGGCGAGAAGATGGC
GGCGGTGGTGATGGCGGCGGCAGAGATACGCCTGGCGTTTCCTGTCGAGG
AGGTGGAGGTGTAAATTCGTCTTTGGTAATGGAGGGAACACGAGTTACGA
ACGTTCCAACTGGGGACGAAGGCGACCGATTCGAGTGAGACTCAAGTGCA
TATCCATTTTCCATGATTTTACCCCTGAAGATCAGCAGGGAAACATGGCT
TCTGGTGTGCTGGACAGTTCCGCTTGTAGTATGTTTGTTTGTATGCTGGT
TGTATCATTATGTCTTCATTAATCTTGAGCTTGTGTTTGATGTGGCTGCA
CGAGTTGTATGTGCAGTATGCATCTTTTTCATTCATGATCTCATGAACCT
CCACCCGTGGTTGGAATATAATATTGTATATATCTCTCTCTATATATATT
TATAAATGGATATTTTTTATGTGATCAATATTGGTATGTATGGTATCAGG
AGAGGAAACCTGATGACCTAAATATATAAATATGTATGTATTGTGTGCAT
TCTGGGAAAGCACTTGGAAATAGCATATTGAACTTTTTTGCGAGAAACGA
GTAGTAATAACGTAAGTATCATCATGGACACCTAAAGGCTTGAATAGAGC
ATGAAATTATTCCGAGAAATGGCCATCATGATGTTGAAGAAGGAAAAACT
TGAATACTTGGGGGGGGAAAGGTATCTTGAGGGCATAGACTGTGATGCGG
GTTTATTGGGGTCCAATCGTCAATCCCGATGATTTTTCAAAAATTATTTT
CATATCACGTATTATTTACCAGGATTTATATATATATATATATATATATA
TATATCATTCTACAAGCAAATTGAACAGTATGATGCCCGCAGCAAAAAAA
ATACCAAACCCGTCGTTTTTTCCCCCGTTTTCTTTGTTAACAATTTGTCA
ACTGCCCACAAAAATATGGCACAACGGGGCAAGCAGGGACGACCAACAGC
GGCACCAACAACATGAACAATATCACGCCTCGTTCGGCTTCCAAGATGTC
GGCAATGACTCTCGCGCAGCCACCACCGCATCCGCCTCGATGACTGCCCC
CCTACCGCCGCCGCCAACACCACCACCGCCTCCCATGGCTTCGTCAACGC
GATCACGTGCGGAGCAAAGCGCCGCCGATGCCTCCACTGCGAACTGGGCC
AACGCTAACTCGAATTGGCCAGACGCACCGACGATGAGCGCTGGAGCACG
AGAGAGCGATACTCCAGGACTTGAGTACGGTTGGAATATCGGAAGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig8245:484..4481+

>mRNA_H-paniculata_contig8245.16265.1 ID=mRNA_H-paniculata_contig8245.16265.1|Name=mRNA_H-paniculata_contig8245.16265.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2040bp|location=Sequence derived from alignment at H-paniculata_contig8245:484..4481+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTGTGTTATGTTCTGTTCTGTTATGTTCTATTCTGCAGGTGTGGGA
TGCCCGGTCTCACCAATTATTGCAGCACTACCCTGCGCACGACTCGGAAG
TAACGTCCATCAGCTTTCACAACTCCGGGAACTTCCTTCTATCGTCGTCC
ACCGATTCTTCACTCAAGTGTGTTGTGTTATGTTCTGTTCTGTTATGTTC
TATTCTGCAGGTGTGGGATGCCCGGTCTCACCAATTATTGCAGCACTACC
CTGCGCACGACTCGGAAGTAACGTCCATCAGCTTTCACAACTCCGGGAAC
TTCCTTCTATCGTCGTCCACCGATTCTTCACTCAAGATATGGGATCTTCG
CGAAGGACGGCTGCTTTATACCCTGAAAGGACATCATGGGCCCGCGACCG
CTAGCTGCTTCAGCGCGGACGGCACACGGTTCGCCTCCGGGGGAGAGAAC
GGGCTCGTTGTTTCGTGGAAGAGCAAACTCTTCGCTCGCTTTGGCTTCGG
CGTTAGCCGCGCCAGCGGCGGTACCAGCGGCGTGGAGCCGGCGGCAGCGG
GAAAGGCAAGGGTTCGCGCTCGAGGAGGAACAGGAGTGGCGGGGTCCAAG
GCGACCGGCGGTGGGCGTGCGGCGCTGAGTCTACGGCCGACAAACGCGCG
ATATGGGATCTTCGCGAAGGACGGCTGCTTTATACCCTGAAAGGACATCA
TGGGCCCGCGACCGCTAGCTGCTTCAGCGCGGACGGCACACGGTTCGCCT
CCGGGGGAGAGAACGGGCTCGTTGTTTCGTGGAAGAGCAAACTCTTCGCT
CGCTTTGGCTTCGGCGTTAGCCGCGCCAGCGGCGGTACCAGCGGCGTGGA
GCCGGCGGCAGCGGGAAAGGCAAGGGTTCGCGCTCGAGGAGGAACAGGAG
TGGCGGGGTCCAAGGCGACCGGCGGTGGGCGTGCGGCGCTGAGTCTACGG
CCGACAAACGCGCGAGTCTGCACTGCACAACCAAGGCAGTCTCCTAGGTC
CTCGATATCGGGAGTGCGCCGTTCTGGAGTGTACACACGGGGAGGGCGAG
AAGATGGCGGCGGTGGTGATGGCGGCGGCAGAGATACGCCTGGCGTTTCC
TGTCGAGGAGGTGGAGGTGTAAATTCGTCTTTGGTAATGGAGGGAACACG
AGTTACGAACGTTCCAACTGGGGACGAAGGCGACCGATTCGAAGTCTGCA
CTGCACAACCAAGGCAGTCTCCTAGGTCCTCGATATCGGGAGTGCGCCGT
TCTGGAGTGTACACACGGGGAGGGCGAGAAGATGGCGGCGGTGGTGATGG
CGGCGGCAGAGATACGCCTGGCGTTTCCTGTCGAGGAGGTGGAGGTGTAA
ATTCGTCTTTGGTAATGGAGGGAACACGAGTTACGAACGTTCCAACTGGG
GACGAAGGCGACCGATTCGAGGACGACCAACAGCGGCACCAACAACATGA
ACAATATCACGCCTCGTTCGGCTTCCAAGATGTCGGCAATGACTCTCGCG
CAGCCACCACCGCATCCGCCTCGATGACTGCCCCCCTACCGCCGCCGCCA
ACACCACCACCGCCTCCCATGGCTTCGTCAACGCGATCACGTGCGGAGCA
AAGCGCCGCCGATGCCTCCACTGCGAACTGGGCCAACGCTAACTCGAATT
GGCCAGACGCACCGACGATGAGCGCTGGAGCACGAGAGAGCGATACTCCA
GGACTTGAGTACGGTTGGAATATCGGAAGGGGACGACCAACAGCGGCACC
AACAACATGAACAATATCACGCCTCGTTCGGCTTCCAAGATGTCGGCAAT
GACTCTCGCGCAGCCACCACCGCATCCGCCTCGATGACTGCCCCCCTACC
GCCGCCGCCAACACCACCACCGCCTCCCATGGCTTCGTCAACGCGATCAC
GTGCGGAGCAAAGCGCCGCCGATGCCTCCACTGCGAACTGGGCCAACGCT
AACTCGAATTGGCCAGACGCACCGACGATGAGCGCTGGAGCACGAGAGAG
CGATACTCCAGGACTTGAGTACGGTTGGAATATCGGAAGG
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