mRNA_H-paniculata_contig8216.16241.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8216.16241.1
Unique NamemRNA_H-paniculata_contig8216.16241.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 5.040e-8
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 2 
Query:  110 YREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEEAER 217
            YR+ LK+RYEHMPEVRRI+ H+HVP+++KKA EAER
Sbjct:  375 YRDSLKKRYEHMPEVRRIAKHRHVPRIVKKAAEAER 410
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BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A109V0H4_9SACH (HHR018Cp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A109V0H4_9SACH)

HSP 1 Score: 55.1 bits (131), Expect = 4.520e-7
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   38 GYGKPTRLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAE 205
            G  +  R K W R  ++  R ++ + Y E LK R++HMPE+RRIS H+HVPK+IKKAE
Sbjct:  366 GNVRVWRSKAWERSNVKTTREKNKLDYDEKLKERFKHMPEIRRISRHRHVPKVIKKAE 423
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BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: H2B0L6_KAZAF (Sof1 domain-containing protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2B0L6_KAZAF)

HSP 1 Score: 53.9 bits (128), Expect = 1.160e-6
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 2 
Query:   38 GYGKPTRLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            G  +  R K W R  ++  R ++ + Y E LK R++HMPE++RIS H+HVPK+IKKA+E
Sbjct:  363 GNVRLWRSKAWERSNVKTTREKNKLDYDEKLKERFKHMPEIKRISRHRHVPKVIKKAQE 421
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: Q75F99_ASHGO (AAL157Cp n=2 Tax=Eremothecium TaxID=33170 RepID=Q75F99_ASHGO)

HSP 1 Score: 53.5 bits (127), Expect = 1.580e-6
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:   56 RLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            R K W R  ++  + ++ + Y E LK R++HMPE+RRIS H+HVPK+IKKA+E
Sbjct:  373 RAKAWERSHVKTTKEKNKLEYDEKLKERFKHMPEIRRISKHRHVPKVIKKAQE 425
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: W0T7C0_KLUMD (Protein SOF1 n=4 Tax=Kluyveromyces TaxID=4910 RepID=W0T7C0_KLUMD)

HSP 1 Score: 53.1 bits (126), Expect = 2.160e-6
Identity = 28/59 (47.46%), Postives = 40/59 (67.80%), Query Frame = 2 
Query:   38 GYGKPTRLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            G  +  R K W R   +  R ++ + Y E LK R++HMPEV+RIS H+HVPK++KKA+E
Sbjct:  363 GNVRLWRAKAWERSNAKSTREKNKLEYDEKLKERFKHMPEVKRISRHRHVPKVVKKAQE 421
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BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A7TFL3_VANPO (Sof1 domain-containing protein n=1 Tax=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294 / BCRC 21397 / CBS 2163 / NBRC 10782 / NRRL Y-8283 / UCD 57-17) TaxID=436907 RepID=A7TFL3_VANPO)

HSP 1 Score: 53.1 bits (126), Expect = 2.160e-6
Identity = 28/62 (45.16%), Postives = 43/62 (69.35%), Query Frame = 2 
Query:   38 GYGKPTRLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEEAER 217
            G  +  R K W R  ++  R ++ + Y E LK R++HMPE++RIS H+HVP++IKKA+E +R
Sbjct:  364 GNVRLWRSKAWERSNVKTTREKNKLEYDEKLKERFKHMPEIKRISRHRHVPQVIKKAQEIKR 425
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A367YPK9_9ASCO (Protein SOF1 n=2 Tax=Candida viswanathii TaxID=5486 RepID=A0A367YPK9_9ASCO)

HSP 1 Score: 52.8 bits (125), Expect = 2.940e-6
Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 2 
Query:   89 RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEEAER 217
            R  + + Y E LK RY+HMPE++RIS H+H+PK++KKAEE  R
Sbjct:  381 RERAKLEYDEKLKERYQHMPEIKRISKHRHLPKVVKKAEEIRR 423
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A4D9D5J5_9STRA (Sof1 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5J5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 3.790e-6
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 2 
Query:   89 RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            R E  + Y E LK+RY+HMPEVRRI+ H+HVPK I KA E
Sbjct:  230 RAEKKLEYEEALKKRYQHMPEVRRIAKHRHVPKAIMKARE 269
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: UPI001D045EB3 (uncharacterized protein n=1 Tax=Bacidia gigantensis TaxID=2732470 RepID=UPI001D045EB3)

HSP 1 Score: 52.4 bits (124), Expect = 4.030e-6
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 2 
Query:   89 RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            R+   + Y E LK+RY HMPE+RRIS H+HVPK +KKA+E
Sbjct:  366 RQRQKLEYDEALKKRYSHMPELRRISRHRHVPKSVKKADE 405
[Close]
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A7H9HTM8_9SACH (Sof1 domain-containing protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HTM8_9SACH)

HSP 1 Score: 52.0 bits (123), Expect = 5.530e-6
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 2 
Query:   56 RLKNWVR*CLR--RRESWVGYREGLKRRYEHMPEVRRIS*HQHVPKMIKKAEE 208
            R K W R  ++  R ++ + Y E LK R+++MPE+RRIS H+HVPK++KKA+E
Sbjct:  370 RAKAWERSNVKTTREKNKLEYDEKLKERFKYMPEIRRISRHRHVPKVVKKAQE 422
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH9_ECTSI5.040e-872.22Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A109V0H4_9SACH4.520e-750.00HHR018Cp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
H2B0L6_KAZAF1.160e-647.46Sof1 domain-containing protein n=1 Tax=Kazachstani... [more]
Q75F99_ASHGO1.580e-650.94AAL157Cp n=2 Tax=Eremothecium TaxID=33170 RepID=Q7... [more]
W0T7C0_KLUMD2.160e-647.46Protein SOF1 n=4 Tax=Kluyveromyces TaxID=4910 RepI... [more]
A7TFL3_VANPO2.160e-645.16Sof1 domain-containing protein n=1 Tax=Vanderwalto... [more]
A0A367YPK9_9ASCO2.940e-655.81Protein SOF1 n=2 Tax=Candida viswanathii TaxID=548... [more]
A0A4D9D5J5_9STRA3.790e-662.50Sof1 domain-containing protein n=1 Tax=Nannochloro... [more]
UPI001D045EB34.030e-660.00uncharacterized protein n=1 Tax=Bacidia gigantensi... [more]
A0A7H9HTM8_9SACH5.530e-649.06Sof1 domain-containing protein n=2 Tax=Torulaspora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8216contigH-paniculata_contig8216:3651..5515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8216.16241.1prot_H-paniculata_contig8216.16241.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8216 3651..5506 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.7594144-CDS-H-paniculata_contig8216:3650..37401622931030.7594144-CDS-H-paniculata_contig8216:3650..3740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8216 3651..3740 -
1691481558.2294123-CDS-H-paniculata_contig8216:3650..37401691481558.2294123-CDS-H-paniculata_contig8216:3650..3740Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8216 3651..3740 -
1622931030.778796-CDS-H-paniculata_contig8216:5383..55061622931030.778796-CDS-H-paniculata_contig8216:5383..5506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8216 5384..5506 -
1691481558.246729-CDS-H-paniculata_contig8216:5383..55061691481558.246729-CDS-H-paniculata_contig8216:5383..5506Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8216 5384..5506 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.8093286-UTR-H-paniculata_contig8216:5506..55151622931030.8093286-UTR-H-paniculata_contig8216:5506..5515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8216 5507..5515 -
1691481558.258937-UTR-H-paniculata_contig8216:5506..55151691481558.258937-UTR-H-paniculata_contig8216:5506..5515Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8216 5507..5515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8216.16241.1

>prot_H-paniculata_contig8216.16241.1 ID=prot_H-paniculata_contig8216.16241.1|Name=mRNA_H-paniculata_contig8216.16241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MTGSGDTNLRIWKANASEKLGTIVPQEERKLGGVQRRPQETVRTYARGPA
HLLASTRTEDDQESRGGRAT*
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mRNA from alignment at H-paniculata_contig8216:3651..5515-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8216.16241.1 ID=mRNA_H-paniculata_contig8216.16241.1|Name=mRNA_H-paniculata_contig8216.16241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1865bp|location=Sequence derived from alignment at H-paniculata_contig8216:3651..5515- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTAGGGATGACGGGCAGTGGCGATACGAACCTGAGGATATGGAAAGC
CAACGCGTCTGAAAAACTGGGTACGATAGTGCCTCAGGAGGAGAGAAAGC
TGGGTGGGGTACAGAGAAGGCCTCAAGAGACGGTGGGCTGCTGTTTTCGG
TATTATGGCATTAGGCACGTACGGTACGGTATATCGTTCCCTTAGGTGAA
ATCAAATATTAAATCTTGAAGCTTGGTTGATTCCCTGCATGTGCAGATGT
TTTATTATGCGCATGTTTCTCTTTTTGTTTGCAGTGAACAACGAAAAGAG
GCCAAAAATGTTTTTTTTCGAAAATACTTTGTAAGTATATGTGTGTGGTT
TTTGCTACAGACGAGATGGACTATAACGAGAAATGGCGTAAGCAATGATT
TTGTCCATACAACCAAACTGTGCAACGAATATTTGAAAAACGAAGGAAGC
ACATGTTTTGGTTTCGAGAGGAGAGGATATTTCACACAGCTCGTTTCTAT
TGGCGGGTATGCTGTAAAGCTGGCTGGTTGCTTAGCCATAAAATCGCTCA
TTTGAGTCAAAAAGCAGTAAACTGCTGATACTTGCATAGTTGGTGAGTTG
GTCGCCTTGGGAGGGTTTGCAATACTCGATCCAAGTGCTCTACGTGTTGT
TTGGTGTGTAAACAAAAACGGGTGACTGCAAGTGCGTTTTCAGCTTTCGT
GAAGATGGAATTATACAGGTAGCGCCTGCACAGGATGTACGTCAGTTGGT
AGTCACAAAACTGTTGCTGCAAAATTGCAGGCGAAGAGAGCCGAAGGACA
TATTCCCAAGTTTTTCTCTGAGATGCACTGAGAGGGAGGCGTGTCTCAAC
GGTTTGGTAAGAAGCTTTTCGAACCATACGGGAGAGCGATCAATGTCAAT
GGCTCCGGCCCTGGGGTAGACTGACTAGCAAAGGCCTGCTGTAGCATAGT
ACAATGCGACAAATTGACGTGGAATTCTGGTTTAGTTTGGGCCAAACGTT
TTGTCTCTCACGCATATTTACTGGGTCAACGCCGTACCTTCTTGTGTGGG
CAACAAACCGATGGTGTGTGCTACCTCTGTCTCATTTCGATAAAACGATA
AAAGCTTCTCGATGCAGGCTAGATATTTCAGGGGTTTGATGTTCGTCATG
AAATAAATAGTAGACTAGGCTAGACTAGGCTAGGCTAGACGAATGGGGTG
GAGTTATGGTGACAAAATATGAATCGTTTTCCTATACTGGATCCAAGTGG
GTTCGTCACGGTGGAGGTATCCCATTTCTCGGAACGTTGTTTCCCTCTTC
TATGTAACCGTTACCTTGGCGTAGCATCCTCCGATGAACTGACATGCGCT
GCTAGTGGTAACTGTTCGTGTTGTGCTGGTGCTGGTGCTGGTGCTGGTGC
TGGCGGTATTATTTTCTATCTAAGATTGACTATATGGTACAAGTAGTAGC
CACAGCTACACCCGTCCGTGCAGTCCTTGTTCCGTCTTCCTACTGTTTCT
ATTAATAACAAAACGTGTGTTCCACGCCTAATCATGGTTTCGTTTCGCTC
GTATGTAGGAACAAGGAATATTGTCACGACTCACACGGACAGATTCGTCC
AGTTTTTTTTTTTTTTTTTTCCGGAAGCAAGGATCACCACCCCTACCACT
TCAGCGCATAGAAATATTGTAGTTTTTTTTTTCTTGTCCAGCCCATTGGT
TACGCCAATACAGAATTATGTGTTCGGACACATGCATTTTCCATTCGTGT
TTCCTGCGTACGACGCTTGGGGTAGGTACGAACATATGCCCGAGGTCCGG
CGCATCTCCTAGCATCAACACGTACCGAAGATGATCAAGAAAGCCGAGGA
GGCCGAGCGACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig8216:3651..5515-

>mRNA_H-paniculata_contig8216.16241.1 ID=mRNA_H-paniculata_contig8216.16241.1|Name=mRNA_H-paniculata_contig8216.16241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig8216:3651..5515- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGGGCAGTGGCGATACGAACCTGAGGATATGGAAAGCCAACGCGTC
TGAAAAACTGGGTACGATAGTGCCTCAGGAGGAGAGAAAGCTGGGTGGGG
TACAGAGAAGGCCTCAAGAGACGATGACGGGCAGTGGCGATACGAACCTG
AGGATATGGAAAGCCAACGCGTCTGAAAAACTGGGTACGATAGTGCCTCA
GGAGGAGAGAAAGCTGGGTGGGGTACAGAGAAGGCCTCAAGAGACGGTAC
GAACATATGCCCGAGGTCCGGCGCATCTCCTAGCATCAACACGTACCGAA
GATGATCAAGAAAGCCGAGGAGGCCGAGCGACATGAGTACGAACATATGC
CCGAGGTCCGGCGCATCTCCTAGCATCAACACGTACCGAAGATGATCAAG
AAAGCCGAGGAGGCCGAGCGACATGA
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