prot_H-paniculata_contig8216.16241.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig8216.16241.1
Unique Nameprot_H-paniculata_contig8216.16241.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length71
Homology
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: D7FIH9_ECTSI (Sof1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIH9_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.630e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            MTGS DTNLRIWKANASEKLG +VP+E RK
Sbjct:  343 MTGSDDTNLRIWKANASEKLGKVVPREARK 372          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A4Y7JCS6_PAPSO (Sof1 domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JCS6_PAPSO)

HSP 1 Score: 50.8 bits (120), Expect = 8.370e-6
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKANASE+LG IVP+E +K
Sbjct:  105 VSGSDDTNLRLWKANASEQLGVIVPRERKK 134          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A2K3M5C3_TRIPR (Ddb1-and cul4-associated factor-like protein n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M5C3_TRIPR)

HSP 1 Score: 50.1 bits (118), Expect = 1.720e-5
Identity = 20/30 (66.67%), Postives = 28/30 (93.33%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKANASE+LG I+P+E++K
Sbjct:  114 ISGSDDTNLRLWKANASEQLGVILPREKKK 143          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A4Y7KLN4_PAPSO (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KLN4_PAPSO)

HSP 1 Score: 50.4 bits (119), Expect = 1.790e-5
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKANASE+LG IVP+E +K
Sbjct:  407 VSGSDDTNLRLWKANASEQLGVIVPRERQK 436          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A0K9P7I3_ZOSMR (DDB1- and CUL4-associated factor 13 n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P7I3_ZOSMR)

HSP 1 Score: 50.1 bits (118), Expect = 2.440e-5
Identity = 19/31 (61.29%), Postives = 28/31 (90.32%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERKL 31
            ++GS DTNLR+WKANASE++G ++P+E +KL
Sbjct:  347 ISGSDDTNLRVWKANASEQMGILLPRERKKL 377          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A8J5CEQ6_ZINOF (DDB1- and CUL4-associated factor 13 n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5CEQ6_ZINOF)

HSP 1 Score: 49.3 bits (116), Expect = 4.550e-5
Identity = 19/31 (61.29%), Postives = 28/31 (90.32%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERKL 31
            ++GS DTNLR+WKA ASE++G ++P+E+RKL
Sbjct:  330 ISGSDDTNLRLWKAKASEQMGVLLPREKRKL 360          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A2K3L9K4_TRIPR (Ddb1-and cul4-associated factor-like protein n=3 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L9K4_TRIPR)

HSP 1 Score: 48.5 bits (114), Expect = 5.460e-5
Identity = 19/30 (63.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS D NLR+WKANASE+LG I+P+E++K
Sbjct:   93 ISGSDDANLRVWKANASEQLGVILPREKKK 122          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A830BFP5_9LAMI (DDB1- and CUL4-associated factor 13 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830BFP5_9LAMI)

HSP 1 Score: 48.9 bits (115), Expect = 6.240e-5
Identity = 19/30 (63.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKANAS++LG ++P+E RK
Sbjct:  348 ISGSDDTNLRLWKANASDQLGVLLPRERRK 377          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: A0A6P8CJY2_PUNGR (DDB1- and CUL4-associated factor 13 n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6P8CJY2_PUNGR)

HSP 1 Score: 48.5 bits (114), Expect = 8.540e-5
Identity = 19/30 (63.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKA ASE+LG ++P+E+RK
Sbjct:  349 ISGSDDTNLRLWKAKASEQLGVVLPREKRK 378          
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Match: I3S842_LOTJA (Sof1 domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3S842_LOTJA)

HSP 1 Score: 48.1 bits (113), Expect = 8.780e-5
Identity = 19/30 (63.33%), Postives = 27/30 (90.00%), Query Frame = 0
Query:    1 MTGSGDTNLRIWKANASEKLGTIVPQEERK 30
            ++GS DTNLR+WKA ASE+LG I+P+E++K
Sbjct:  114 ISGSDDTNLRLWKAKASEQLGVILPREQKK 143          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8216.16241.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FIH9_ECTSI1.630e-783.33Sof1 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A4Y7JCS6_PAPSO8.370e-670.00Sof1 domain-containing protein n=2 Tax=Papaver som... [more]
A0A2K3M5C3_TRIPR1.720e-566.67Ddb1-and cul4-associated factor-like protein n=2 T... [more]
A0A4Y7KLN4_PAPSO1.790e-570.00Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
A0A0K9P7I3_ZOSMR2.440e-561.29DDB1- and CUL4-associated factor 13 n=1 Tax=Zoster... [more]
A0A8J5CEQ6_ZINOF4.550e-561.29DDB1- and CUL4-associated factor 13 n=2 Tax=Zingib... [more]
A0A2K3L9K4_TRIPR5.460e-563.33Ddb1-and cul4-associated factor-like protein n=3 T... [more]
A0A830BFP5_9LAMI6.240e-563.33DDB1- and CUL4-associated factor 13 n=1 Tax=Phthei... [more]
A0A6P8CJY2_PUNGR8.540e-563.33DDB1- and CUL4-associated factor 13 n=4 Tax=cellul... [more]
I3S842_LOTJA8.780e-563.33Sof1 domain-containing protein n=1 Tax=Lotus japon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..22
score: 9.257
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..22
score: 9.372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8216contigH-paniculata_contig8216:3651..5506 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8216.16241.1mRNA_H-paniculata_contig8216.16241.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig8216 3651..5515 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig8216.16241.1 ID=prot_H-paniculata_contig8216.16241.1|Name=mRNA_H-paniculata_contig8216.16241.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
MTGSGDTNLRIWKANASEKLGTIVPQEERKLGGVQRRPQETVRTYARGPA
HLLASTRTEDDQESRGGRAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017986WD40_repeat_dom
IPR001680WD40_repeat