mRNA_H-paniculata_contig810.16120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig810.16120.1
Unique NamemRNA_H-paniculata_contig810.16120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig810.16120.1 vs. uniprot
Match: D8LM71_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM71_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 2.630e-50
Identity = 180/448 (40.18%), Postives = 225/448 (50.22%), Query Frame = 1 
Query:    1 GLERTLLESHLRLLLGKLGVGSGD-GGCGGDRNEGQDGVGDEVGRRGSGDAAPRPRRHKFRYYEIPSFLKSFDRSCCTTRKFCVISSQSPPLIVHSTRQIRCCRAEVPLHSRSDGIRG--APSRSAPRIPLETRQDRAVYEFLGAGGSQTSDLDVVGLRGGSRGAG---TRGSKERGG-----FGSS---PGTPGRPGTSGLRRSAPECLESGRCISVATIDATLGELRAAFEG-AKNLLEEVSDLTSLLEDEAQRKIDVERRQQR------------PNSADGCA---VVSSELRRYGKKLEAAVRLQEHAKETADHLTL--FPSPGSSATAGSGGSRRGGIGGGAKVQHISSSSSSTSVVGIHVAVVKKGSPGLRNSGNHRCGGC---AGDKKNRGGVEGGSNGGNCRCXNNRSXXXXXXXGST-SVCDKLRGAVRVAREEETLED 1236
            GLERTLLE+HLRLLLGKLGV SG+ GG GG  +                    RPR H FR  ++    +S  R CC T         SP        + +C       ++R            + P +PLET+QDRAVYEFL   G      +  GL GG+ G G   T G  ERGG      G+S   PGT  RPG+S   RSAPECLESGRC++VATID  LGELRAAFE  A+NLLEEV+DLT LLEDEA  K D ER+ +R             N+A   A   + SSELRRYGKKLE AVR +EHA + A  L L    +PG     G    ++ G GG   V  +S SS S+  +         GS     S  HR  G    A   +  G +  G +  +     +++       G   ++  KLRGAVR +REEE ++D
Sbjct:   58 GLERTLLEAHLRLLLGKLGVPSGNQGGKGGLASMSPSSXXXXXXXXXXXXXVGRPRPHTFREDDL--CRRSSTRPCCATTAGSPGEDSSP--------RRKCLNGRKASYARXXXXXXXXCSEPTTPYVPLETQQDRAVYEFLSTSG------ECDGLSGGAAGRGGNGTHGEAERGGSEGAAVGNSRSRPGTGRRPGSSRSARSAPECLESGRCVTVATIDTALGELRAAFEEEAQNLLEEVADLTGLLEDEAAVKADDERQSRRHLGPKAGDYGGKSNAAAAAANDPIPSSELRRYGKKLEEAVRSREHAADVAQRLALPRQRAPGLEPGCGGKDGKKKGRGG-MTVAPVSRSSRSSEDL--------PGSTARLESSRHRGPGVGRKASIGRGSGSIGSGPSVEDKARGEDKAVGRRGGGGERGALATKLRGAVRASREEEVVDD 480
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BLAST of mRNA_H-paniculata_contig810.16120.1 vs. uniprot
Match: A0A6H5KD29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD29_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.470e-10
Identity = 79/211 (37.44%), Postives = 98/211 (46.45%), Query Frame = 1 
Query:  664 KNLLEEVSDLTSLLEDEAQRKIDVERRQQR------------PNSADGCAVVSSELRRYGKKLEAAVRLQEHAKETADHLTL--FPSPGSSATAGSGGSRRGGIGGGAKVQHISSSSSSTSVVGIHVAVVKKGSPGLRNSGNHRCGGCAGDKKNRGGVEGGSNGGNCRCXN-----NRSXXXXXXXGST-SVCDKLRGAVRVAREEETLED 1236
            KNLLEEV+DLT LLEDEA  K D ERR +R             N+A   ++ SSELRRYGKKLE AVR +EHA   A  L L    +PG     G    R+ G GG        SS  S  + G  V +          S  HR  G  G +K   G   GS G      +     +++       G   ++  KLRG VR +REEE  +D
Sbjct:   57 KNLLEEVADLTGLLEDEAAVKADDERRSRRHLGPKVGDSGGTSNAAANDSIPSSELRRYGKKLEEAVRSREHAAGVAQRLALPRQRAPGLETGCGGKDGRKKGRGGTTVAPVSRSSRCSQDLPGSAVRL---------QSSRHR--GPGGGRKASIGRGSGSIGSGPSVEDKAPGEDKAVGRRGGGGERGALATKLRGTVRASREEEVADD 256
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig810.16120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LM71_ECTSI2.630e-5040.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD29_9PHAE6.470e-1037.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig810contigH-paniculata_contig810:20861..23408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1257
Cds size1257
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig810.16120.1prot_H-paniculata_contig810.16120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig810 20861..23408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931014.826271-CDS-H-paniculata_contig810:20860..211721622931014.826271-CDS-H-paniculata_contig810:20860..21172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 20861..21172 -
1691481551.2764485-CDS-H-paniculata_contig810:20860..211721691481551.2764485-CDS-H-paniculata_contig810:20860..21172Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 20861..21172 -
1622931014.8490546-CDS-H-paniculata_contig810:21204..214831622931014.8490546-CDS-H-paniculata_contig810:21204..21483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 21205..21483 -
1691481551.2848122-CDS-H-paniculata_contig810:21204..214831691481551.2848122-CDS-H-paniculata_contig810:21204..21483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 21205..21483 -
1622931014.8746917-CDS-H-paniculata_contig810:21955..220571622931014.8746917-CDS-H-paniculata_contig810:21955..22057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 21956..22057 -
1691481551.292607-CDS-H-paniculata_contig810:21955..220571691481551.292607-CDS-H-paniculata_contig810:21955..22057Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 21956..22057 -
1622931014.8960643-CDS-H-paniculata_contig810:22622..229481622931014.8960643-CDS-H-paniculata_contig810:22622..22948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 22623..22948 -
1691481551.3003953-CDS-H-paniculata_contig810:22622..229481691481551.3003953-CDS-H-paniculata_contig810:22622..22948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 22623..22948 -
1622931014.9189253-CDS-H-paniculata_contig810:23155..232591622931014.9189253-CDS-H-paniculata_contig810:23155..23259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 23156..23259 -
1691481551.3078887-CDS-H-paniculata_contig810:23155..232591691481551.3078887-CDS-H-paniculata_contig810:23155..23259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 23156..23259 -
1622931014.945155-CDS-H-paniculata_contig810:23274..234081622931014.945155-CDS-H-paniculata_contig810:23274..23408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 23275..23408 -
1691481551.3156285-CDS-H-paniculata_contig810:23274..234081691481551.3156285-CDS-H-paniculata_contig810:23274..23408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig810 23275..23408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig810.16120.1

>prot_H-paniculata_contig810.16120.1 ID=prot_H-paniculata_contig810.16120.1|Name=mRNA_H-paniculata_contig810.16120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=419bp
GLERTLLESHLRLLLGKLGVGSGDGGCGGDRNEGQDGVGDEVGRRGSGDA
APRPRRHKFRYYEIPSFLKSFDRSCCTTRKFCVISSQSPPLIVHSTRQIR
CCRAEVPLHSRSDGIRGAPSRSAPRIPLETRQDRAVYEFLGAGGSQTSDL
DVVGLRGGSRGAGTRGSKERGGFGSSPGTPGRPGTSGLRRSAPECLESGR
CISVATIDATLGELRAAFEGAKNLLEEVSDLTSLLEDEAQRKIDVERRQQ
RPNSADGCAVVSSELRRYGKKLEAAVRLQEHAKETADHLTLFPSPGSSAT
AGSGGSRRGGIGGGAKVQHISSSSSSTSVVGIHVAVVKKGSPGLRNSGNH
RCGGCAGDKKNRGGVEGGSNGGNCRCGNNRSGGGVSGGGSTSVCDKLRGA
VRVAREEETLEDQERFLN*
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mRNA from alignment at H-paniculata_contig810:20861..23408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig810.16120.1 ID=mRNA_H-paniculata_contig810.16120.1|Name=mRNA_H-paniculata_contig810.16120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2548bp|location=Sequence derived from alignment at H-paniculata_contig810:20861..23408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTTGAACGAACGCTACTAGAGTCGCATCTGCGATTGCTACTTGGAAA
ACTGGGAGTCGGCAGTGGCGATGGGGGGTGCGGCGGGGACCGAAATGAAG
GTCAAGATGGCGTCGGTGACGAAGTAGGGAGACGGTGAGGAGATGACAGT
GGGAGTGGCGACGCTGCGCCTAGACCTCGACGGCATAAATTTAGATACTA
TGAGATACCGTCATTCCTGAAGTCCTTCGACCGGTCTTGTTGCACCACGA
GGAGTGGGTGAGTAGCAGGTGTTGCTGGTTTACGGATTTTCTGCGCTGAT
GACTGCCCAAACAAGAGTTGAGTTGGGAACTTCCGGGGTTGACAAGCACC
ATTCTCTTTGAAAACACTCATCACACGCTAAAATGTTACTTCCAGGTATG
CACACACGAGACCGTTCATGTGACACCGTGTCCCCACCCATCAGTCTTTG
CTTTCCCGAGAATTTTGTGTTATATCCTCGCAATCCCCGCCATTGATCGT
TCATTCCACACGACAAATCAGGTGCTGTCGCGCAGAAGTGCCGCTGCATA
GCAGAAGCGACGGAATCAGGGGTGCCCCATCGAGAAGCGCGCCACGTATA
CCCCTAGAGACCCGACAGGACCGAGCTGTTTACGAATTCTTAGGTGCTGG
AGGAAGCCAAACCTCCGACCTTGACGTGGTCGGCCTACGAGGCGGGAGCA
GAGGCGCCGGAACGAGAGGAAGTAAGGAAAGGGGTGGTTTTGGGTCGAGT
CCAGGGACGCCTGGAAGGCCGGGAACTTCTGGATTAGTCAGGTTGGTGGG
GTCGCATAACATTAGGTATAAATGTAGTACCACAAAGGGACTCAATGTTA
AAAAATATGCGTGAAGTTTGATATGAGGGGAAGCGGGGGGTTGTGCGTGG
GATTCTCAGAACTGCGTCAATCACACGTATTTATTGTGTGGTTGTCACCA
AATCTATTTCAAAAGTTTAGCAATATTCTGACGATTGCCAAGGTTTTCAT
CTTTCGTATGCTGACAACATTTGAACGGATTCATCATGAGTGACCAAAAC
ACACCTAGGCGGTCCTGATATGAACAAGCAAGCAGAGTTCGTATAGGTAA
ACGGAAGAAGAGGAGCATTCTTACAAGAAACACAATGACTCTCGACGATA
GTAAAACATAGGTGTGCACGTCTTAAGCAACACACAGCATCAAGCGACGA
AGTATCGATTGACATACATTTCCGCGGTAGTCCAAATCCCTGCCGAAACC
TGTACTTGCCTGTTTTACCTCCCTCCTGCACCCTGCACGGGCATTGTCAT
CCATCACTCTCACACGATGCTTCTCTCACTCTCTGAATATATCGTTGTGA
GAGAAGATCCGCTCCAGAGTGCTTGGAATCGGGGCGCTGCATTTCTGTTG
CCACGATAGATGCAACCCTTGGAGAACTCCGAGCCGCCTTTGAAGGAGCG
AAGGTTCAGTATAGAGTGATTGAACGATAGGGAGGGGGGGGGGGGGGTTA
TTCCGAACGTCTATTCGATGCACCCTTGGGGATAGTGATCTAGTCATGGC
CTCACCTTTGGAAGCAGGTTGCTGTTGGGAAGTCTTACGCTATTGGATAG
AGGACAGTACAGTATAACATATTGGTCTCGGAGGGGGAGGGTTGTACGTG
GGACCTTTCAGGGTTGAATCTCCTACACCCGCCCTCTGATCGGCGAACGA
ATCTTCAGCCCAGCGATTACAAAGTAGTGAGATCAGATACCTGGAAGATA
GACGATATTCGAAGTACTTGTAGTGATCAACGATCACTATCTGCAGGTAT
CTCAACTACCGACCTCCGCGTCCTTCCCCTTCACCTTCACCTTCCCCTTC
CCCGTTCTCTCTCTCTCCTCCGGTGCCGCTACCATCATCCATCCACCCAC
CTCCTATCACAATGAATAACCAAAGAACCTCCTAGAGGAGGTATCGGACC
TGACCTCGCTTCTCGAAGACGAGGCGCAACGAAAAATAGACGTGGAGCGA
CGCCAGCAACGCCCAAATTCCGCTGATGGCTGCGCCGTGGTATCCTCAGA
ACTCCGCCGCTACGGCAAGAAGCTCGAAGCAGCGGTCAGATTACAAGAGC
ACGCCAAGGAAACTGCAGACCATCTGACATTATTTCCGTCTCCAGGAAGT
TCTGCCACCGCTGGCAGTGGCGGTAGTAGGCGAGGTGGTATTGGGGGGGG
GGCAGTTCACAATCACAACGCTTAGAGTCTTTGCAGAAAGTACAACATAT
TAGTAGTAGCAGTAGTAGCACTTCTGTTGTCGGCATTCACGTCGCAGTGG
TTAAGAAAGGTAGTCCTGGGCTACGCAATAGTGGTAACCATCGGTGTGGC
GGATGTGCTGGTGACAAAAAGAATCGCGGCGGAGTTGAAGGAGGGAGCAA
TGGTGGCAACTGTAGGTGTGGCAACAACAGGAGCGGCGGCGGCGTTAGTG
GGGGTGGTAGTACTAGTGTGTGCGACAAGTTACGGGGGGCGGTGCGTGTT
GCTCGAGAAGAGGAAACGTTGGAAGATCAAGAGAGGTTCTTGAACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig810:20861..23408-

>mRNA_H-paniculata_contig810.16120.1 ID=mRNA_H-paniculata_contig810.16120.1|Name=mRNA_H-paniculata_contig810.16120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2514bp|location=Sequence derived from alignment at H-paniculata_contig810:20861..23408- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTTGAACGAACGCTACTAGAGTCGCATCTGCGATTGCTACTTGGAAA
ACTGGGAGTCGGCAGTGGCGATGGGGGGTGCGGCGGGGACCGAAATGAAG
GTCAAGATGGCGTCGGTGACGAAGTAGGGAGACGGGTCTTGAACGAACGC
TACTAGAGTCGCATCTGCGATTGCTACTTGGAAAACTGGGAGTCGGCAGT
GGCGATGGGGGGTGCGGCGGGGACCGAAATGAAGGTCAAGATGGCGTCGG
TGACGAAGTAGGGAGACGTGGGAGTGGCGACGCTGCGCCTAGACCTCGAC
GGCATAAATTTAGATACTATGAGATACCGTCATTCCTGAAGTCCTTCGAC
CGGTCTTGTTGCACCACGAGGATGGGAGTGGCGACGCTGCGCCTAGACCT
CGACGGCATAAATTTAGATACTATGAGATACCGTCATTCCTGAAGTCCTT
CGACCGGTCTTGTTGCACCACGAGGAAATTTTGTGTTATATCCTCGCAAT
CCCCGCCATTGATCGTTCATTCCACACGACAAATCAGGTGCTGTCGCGCA
GAAGTGCCGCTGCATAGCAGAAGCGACGGAATCAGGGGTGCCCCATCGAG
AAGCGCGCCACGTATACCCCTAGAGACCCGACAGGACCGAGCTGTTTACG
AATTCTTAGGTGCTGGAGGAAGCCAAACCTCCGACCTTGACGTGGTCGGC
CTACGAGGCGGGAGCAGAGGCGCCGGAACGAGAGGAAGTAAGGAAAGGGG
TGGTTTTGGGTCGAGTCCAGGGACGCCTGGAAGGCCGGGAACTTCTGGAT
TAAATTTTGTGTTATATCCTCGCAATCCCCGCCATTGATCGTTCATTCCA
CACGACAAATCAGGTGCTGTCGCGCAGAAGTGCCGCTGCATAGCAGAAGC
GACGGAATCAGGGGTGCCCCATCGAGAAGCGCGCCACGTATACCCCTAGA
GACCCGACAGGACCGAGCTGTTTACGAATTCTTAGGTGCTGGAGGAAGCC
AAACCTCCGACCTTGACGTGGTCGGCCTACGAGGCGGGAGCAGAGGCGCC
GGAACGAGAGGAAGTAAGGAAAGGGGTGGTTTTGGGTCGAGTCCAGGGAC
GCCTGGAAGGCCGGGAACTTCTGGATTAAGAAGATCCGCTCCAGAGTGCT
TGGAATCGGGGCGCTGCATTTCTGTTGCCACGATAGATGCAACCCTTGGA
GAACTCCGAGCCGCCTTTGAAGGAGCGAAGAGAAGATCCGCTCCAGAGTG
CTTGGAATCGGGGCGCTGCATTTCTGTTGCCACGATAGATGCAACCCTTG
GAGAACTCCGAGCCGCCTTTGAAGGAGCGAAGAACCTCCTAGAGGAGGTA
TCGGACCTGACCTCGCTTCTCGAAGACGAGGCGCAACGAAAAATAGACGT
GGAGCGACGCCAGCAACGCCCAAATTCCGCTGATGGCTGCGCCGTGGTAT
CCTCAGAACTCCGCCGCTACGGCAAGAAGCTCGAAGCAGCGGTCAGATTA
CAAGAGCACGCCAAGGAAACTGCAGACCATCTGACATTATTTCCGTCTCC
AGGAAGTTCTGCCACCGCTGGCAGTGGCGGTAGTAGGCGAGGTGGTATTG
GGGGGGGGGCAAACCTCCTAGAGGAGGTATCGGACCTGACCTCGCTTCTC
GAAGACGAGGCGCAACGAAAAATAGACGTGGAGCGACGCCAGCAACGCCC
AAATTCCGCTGATGGCTGCGCCGTGGTATCCTCAGAACTCCGCCGCTACG
GCAAGAAGCTCGAAGCAGCGGTCAGATTACAAGAGCACGCCAAGGAAACT
GCAGACCATCTGACATTATTTCCGTCTCCAGGAAGTTCTGCCACCGCTGG
CAGTGGCGGTAGTAGGCGAGGTGGTATTGGGGGGGGGGCAAAAGTACAAC
ATATTAGTAGTAGCAGTAGTAGCACTTCTGTTGTCGGCATTCACGTCGCA
GTGGTTAAGAAAGGTAGTCCTGGGCTACGCAATAGTGGTAACCATCGGTG
TGGCGGATGTGCTGGTGACAAAAAGAATCGCGGCGGAGTTGAAGGAGGGA
GCAATGGTGGCAACTGTAGGTGTGGCAACAACAGGAGCGGCGGCGGCGTT
AGTGGGGGTGGTAGTACTAGTGTGTGCGACAAGTTACGGGGGGCGGTGCG
TGTTGCTCGAGAAGAGGAAACGTTGGAAGATCAAGAGAGGTTCTTGAACT
AGAAAGTACAACATATTAGTAGTAGCAGTAGTAGCACTTCTGTTGTCGGC
ATTCACGTCGCAGTGGTTAAGAAAGGTAGTCCTGGGCTACGCAATAGTGG
TAACCATCGGTGTGGCGGATGTGCTGGTGACAAAAAGAATCGCGGCGGAG
TTGAAGGAGGGAGCAATGGTGGCAACTGTAGGTGTGGCAACAACAGGAGC
GGCGGCGGCGTTAGTGGGGGTGGTAGTACTAGTGTGTGCGACAAGTTACG
GGGGGCGGTGCGTGTTGCTCGAGAAGAGGAAACGTTGGAAGATCAAGAGA
GGTTCTTGAACTAG
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