mRNA_H-paniculata_contig8095.16108.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig8095.16108.1
Unique NamemRNA_H-paniculata_contig8095.16108.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.470e-58
Identity = 111/260 (42.69%), Postives = 153/260 (58.85%), Query Frame = 1
Query:    1 LQRRLKEMGATKAKRRITPPLSLTNRKNRVDFILDQAARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSRLDSSRDFDGKIGIWRVCAIKQAQRISAR-------------RERGH----------QYEFDVIIDAG*YQEWYKGAFLPVLKEKMPWLEG-----EEDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLL 696
            ++R   ++GA K   RI P LS   +++R+DFI D+       +      +H+DE+WFYL R++++V++FSG++  G  +V H+S++ K+M I   +R D + DFDGKIGIWR+C I+ AQR S +             RE  H          +YEFD  IDA  Y++WY    LP +KEKMPWL       ++D A+PHT K  P  LN  G   G  V LVTQPAQSPDLNIN+LG FASLK RVW     ++D L+
Sbjct:  105 VRRWFSKLGAAKKAGRIKPSLSDAQKRHRMDFISDRVDEPIGEYLDQGNVVHLDESWFYLMREKEKVRVFSGEDVPGPPRVPHESHLPKIMVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU)

HSP 1 Score: 141 bits (355), Expect = 8.190e-35
Identity = 93/288 (32.29%), Postives = 145/288 (50.35%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQAARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERGHQYEFDV-IIDAG*YQEWYKGAFLPVLKEKMP--WLEG----EEDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            + P L+  N+K RV+F L    +    F   + TIHIDE WFYL     +  L SG+    ST  + K +I KVMF+C V+R     D +  FDGKIGIW     + AQR S  R RG     ++  ++A  YQ+      LP ++EK P  W       +ED A PH  +     + E  ++ G N+ + TQP  SPD N+ +LGFFAS+++  +++R   +D L+  ++          L  ++ SL     + +K    N ++++H   +K  +  +LP S+  D
Sbjct:  200 VKPFLTEKNKKARVEFALS-LIKPDGKFEDMYDTIHIDEKWFYLKTTNQKTYLCSGEPEPHST-CKSKRFIEKVMFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSR-AAVREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQALQYKKRAKNIDQLIANVEEALVETSTIALNSIFLSLQCALEESIKVQGNNSYKLRHMGKEKLLKEDNLPVSITCD 484          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: UPI002008F034 (uncharacterized protein LOC125206616 n=4 Tax=Salvia TaxID=21880 RepID=UPI002008F034)

HSP 1 Score: 130 bits (327), Expect = 3.930e-31
Identity = 95/297 (31.99%), Postives = 143/297 (48.15%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQA----ARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERG-------HQYEFDVIIDAG*YQEWYKGAFLPVLKEKMP-WLEGE----EDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            I P L+  N+  RV + L Q      + R+ ++S    +HIDE WFY+ +  DR  L   ++    +  + K YI+KVMF+C VSR    +D    +DGK+GI+    +  AQR S  R RG       H    +V+ D            +P +K K P W   +    +D ATPH     P        DG + + L+ QPA SPD NI +LGFF +++S  + +   TVD L+  + S +      TL RV+ SL     +IL    GN ++V H    + QR   LP  ++++
Sbjct:  131 IKPSLTNINKLARVRWSLSQLQPQITQGRVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKAIHSVTKEVMRDC------LINKIIPAIKAKWPVWASKDIYIQQDNATPHITAMDPDFQAAANSDGFK-IQLICQPANSPDTNILDLGFFRAIQSLQYEKPCKTVDELVGNVCSSFAELSPQTLNRVFLSLQACLTEILLCRGGNGYKVPHINKDRLQRTVGLPNVLEVE 419          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: UPI00200958F7 (uncharacterized protein LOC125195984 n=2 Tax=Salvia hispanica TaxID=49212 RepID=UPI00200958F7)

HSP 1 Score: 130 bits (326), Expect = 5.440e-31
Identity = 92/297 (30.98%), Postives = 144/297 (48.48%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQA----ARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERG-------HQYEFDVIIDAG*YQEWYKGAFLPVLKEKMP-WLEGE----EDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            I P L+  N+  RV + L Q      + R+ ++S    +HIDE WFY+ +  DR  L   ++    +  + K +I+KVMF+C VSR    +D    +DGK+GI+    +  AQR S  R RG       H    +V+ D            +P +K K P W   +    +D ATPH     P +   +    G  + L+ QP  SPD NI +LGFF +++S  + +   TVD L+  + S +      TL +V+ SL     +IL+   GN ++V H    + QR   LPK ++++
Sbjct:  131 IKPALTNMNKLARVRWSLSQLQPQITQGRVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRFITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKPLHSVTKEVMRDC------LINKIIPAIKAKWPIWASKDIYIQQDNATPHITAMDP-EFQVVANSDGFKIQLICQPPNSPDTNILDLGFFRAIQSLQYEKPCSTVDELVGNVCSSFAELSPQTLNKVFLSLQACLTEILQCRGGNGYKVPHINKDRLQRTVGLPKVLEVE 419          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: A0A8I6XRQ9_HORVV (HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6XRQ9_HORVV)

HSP 1 Score: 132 bits (331), Expect = 6.420e-31
Identity = 95/313 (30.35%), Postives = 154/313 (49.20%), Query Frame = 1
Query:    7 RRLKEMGATKAKRRITPPLSLTNRKNRVDFILDQAARHRIT--------FRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR--LDSSRD--FDGKIGIWRVCAIKQAQRISARRERGHQYEFDVI--IDAG*YQEWYKGAFLPVLKEKMP----W--LEGEEDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKIDRE 885
            RRLK     +    + P L+  N++ RV++ L    R  +T        FR+    +HIDE WFY  R    + L S +E     + +HK++I K+MF+  ++R   D+  +  FDGKIG+W      QA++ S  R RG  +E      +D    QE+     LP +KEK P    W  +  ++D A  H + D P  L E  + GG ++ ++ QP  SPD NI +LG+FAS+++   ++   T+  ++ ++      +    L R+W S      +I+K      + V H + K  +R G LP  + +DRE
Sbjct:  356 RRLKMKEIRRITSELKPSLTAANKRARVEYALMHLERSSLTSQGGINPIFRADMDVVHIDEKWFYRMRKTQNMYL-SHREEAPHRECKHKNHIQKIMFLSAMARPRYDAQGNCVFDGKIGVWAYTEWVQAKKKSQNRLRG-AWELKPCDKVDREKSQEYLVKYVLPAIKEKWPESDRWNTIYVQQDNARTHIKPDDPLFLQEAAR-GGWDIRMIYQPPNSPDTNILDLGWFASIQAMFHKKMPKTLPEIVAKVNQSLAEYPHQKLNRIWLSHQACMREIIKHKGSMHYAVPHLKKKALERQGCLPVRLTVDRE 665          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: UPI002009DA99 (uncharacterized protein LOC125209340 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009DA99)

HSP 1 Score: 127 bits (320), Expect = 7.530e-31
Identity = 91/297 (30.64%), Postives = 142/297 (47.81%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQA----ARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERG-------HQYEFDVIIDAG*YQEWYKGAFLPVLKEKMP-WLEGE----EDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            I P L+  N+  RV + L Q      + R+ ++S    +HIDE WFY+ +  DR  L   ++    +  + K +I+KVMF+C VSR    +D    +DGK+GI+    +  AQR S  R RG       H    +V+ D            +P +K K P W   +    +D ATPH     P +   +    G  + L+ QP  SPD NI +LGF  +++S  + +   TVD L+  + S +      TL +V+ SL     + L+   GN ++V H    + QR   LPK +++D
Sbjct:   28 IKPALTNMNKLARVRWSLSQLQPQITQARVQYQSMHNVVHIDEKWFYMTKASDRYYLLPDEDEPYRS-CKSKRFITKVMFMCAVSRPHFGMDGQATYDGKVGIFPFTEVLPAQRKSKNRPRGTMETKPLHSVTKEVMRDC------LINKIIPAIKAKWPIWASKDIYIQQDNATPHITAMDP-EFQAVANSDGFKIQLICQPPNSPDTNILDLGFLRAIQSLQYEKPCSTVDELVGNVCSSFAELSPQTLNKVFLSLQACLTEYLQCKGGNGYKVPHINKDRLQRTVGLPKVLEVD 316          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: J3S7K7_BETVV (Mariner transposase n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=J3S7K7_BETVV)

HSP 1 Score: 130 bits (326), Expect = 1.150e-30
Identity = 94/295 (31.86%), Postives = 152/295 (51.53%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQAARHRIT----FRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR--LDSSRD--FDGKIGIWRVCAIKQAQRISARRERGH-QYEFDVIIDAG*YQEWYKGAFLPVLKEKMP-------WLEGEEDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKIDRE 885
            I P L+  ++  R+ F+L Q+    +     F   +  IHIDE WF++++   R  L S +E       + K++I+KVMF+  ++R  L  + D  +DGKIGI+      +AQR SA R  G  + +    I     +E      LP ++ K P       W++  +D A PH + +    L E  ++GG  +N++ QPAQSPDLNI +LGFF +++S   +    TVD L++ ++  Y  ++   +   W  L     +ILK   GN+++  H   KK  R+G LP +V+I  E
Sbjct:  197 IKPKLTPKHKVARMKFVLSQSIPKSMNELPKFNHLYNMIHIDEKWFFMSKITQRFYLLS-EEEDPYRACQSKAFITKVMFLAAIARPWLGPTGDILWDGKIGIFPFIDEVRAQRWSANRPAGTIEKKAKQSITKETIREMIINKLLPAIRAKWPENGCKEIWIQ--QDNARPHIQPNDAEFL-EACREGGFEINIICQPAQSPDLNILDLGFFKAIQSIQHQSFPKTVDELIKSVEDAYTVYEPRIINYTWIHLMYVMVEILKVKGGNNYKNPHNSKKKMDRLGLLPTTVEISEE 487          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: A0A448ZNT1_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT1_9STRA)

HSP 1 Score: 129 bits (325), Expect = 1.910e-30
Identity = 92/286 (32.17%), Postives = 141/286 (49.30%), Query Frame = 1
Query:   55 PPLSLTNRKNRVDFILDQAARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERGHQYEFDVIIDAG*YQEWYKGAFLPVLKEKMPWLEG------EEDRATPHTRKDTPRK-LNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            P L+  N+  RV++IL+    +   F   F+ IHIDE WFYL R +    L  G+    ST  + K++++KVMF+C  +R     ++   FDGKIGIW     + A+R S  R +G        +D   Y+       LP + EK P          +ED A PH  K T R+ +       G N+ + TQP  SPD+N+ +LGFF S++S  +++R   +D L+  ++  +D   R TL  V+ SL       L     N++++ H       R G+LP S+  D
Sbjct:  235 PLLTAKNKLKRVEWILEHIDDNG-RFDDWFKWIHIDEKWFYLKRTKQTTYLLPGEAEPKSTS-KSKNHMTKVMFLCATARPRWDTNNCAWFDGKIGIWPFVVKEPAKRSSVNRPKGTLVTKPQNVDGEVYKRMLLEKVLPAIYEKWPRGSSTPEIFIQEDNAKPH--KATIREEVKAAAASKGWNITVKTQPPNSPDMNVLDLGFFNSIQSLQYKKRSKDIDHLIANVEEAFDECKRETLNNVFLSLQACMEASLGVDGDNNYKLPHMGKASLMREGTLPISIICD 516          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: UPI001C2541F4 (uncharacterized protein LOC121800620 n=4 Tax=Salvia splendens TaxID=180675 RepID=UPI001C2541F4)

HSP 1 Score: 128 bits (322), Expect = 2.000e-30
Identity = 90/291 (30.93%), Postives = 140/291 (48.11%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQAARH----RITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR----LDSSRDFDGKIGIWRVCAIKQAQRISARRERGHQYEFDVI-IDAG*YQEWYKGAFLPVLKEKMP-WLEGE----EDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            I P L+  N+  R+ + L +   H    R+ F S    +HIDE WFY+ +  DR  L    E       + K +I+KVMF+C VSR    LD    FDGK+GI+    +  AQR S  R +G      +  ++    ++      +P +K K P W   E    +D ATPH       +   + K  G  ++L+ QP  SPD NI +LGFF ++++    +    VD LLE + S Y+     TL +V+ SL     +I+     N+++V H    + +R   LP ++ +D
Sbjct:  131 IKPALTDANKLARLKWCLSKLEPHINAGRVQFESMHNVVHIDEKWFYMTKTSDRYYLLPD-EVEPYRACKSKRFITKVMFMCAVSRPVFGLDGQTKFDGKLGIFPFTELVAAQRKSKNRAKGTLETKPISSVNKSVMRDCIINKIVPAIKAKWPEWASKEIYIQQDNATPHIN-GVDAEFEAIAKSDGFKIHLICQPPNSPDTNILDLGFFRAIQTLQHEKPCNNVDTLLENVCSSYEELSPQTLNKVFLSLQACLTEIMVFRGENNYKVPHINKARLERTVGLPNALDVD 419          
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Match: UPI0020091A08 (uncharacterized protein LOC125206097 n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI0020091A08)

HSP 1 Score: 127 bits (319), Expect = 5.390e-30
Identity = 95/294 (32.31%), Postives = 143/294 (48.64%), Query Frame = 1
Query:   49 ITPPLSLTNRKNRVDFILDQA----ARHRITFRSGFQTIHIDETWFYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSR--LDSSRD--FDGKIGIWRVCAIKQAQRISARRERGHQYEFDVIIDAG*YQEWYKGAFL----PVLKEKMP-WLEGE----EDRATPHTRKDTPRKLNELGKDGGRNVNLVTQPAQSPDLNINNLGFFASLKSRVWRERYGTVDGLLERIKSMYDAFDRATLERVWQSLFQRYNQILKALRGNDFEVQHTETKKRQRVGSLPKSVKID 879
            I P L+  N+  R+ + L Q      + ++ F      +HIDE WFY+ +  DR  L   ++    +  + K YI+KVMF+C VSR   DS     +DGK+GI+       AQR S  R+RG   E   I      +E  +G  +    P +K K P W   E    +D ATPH     P +   +    G  ++L+ QP  SPD NI +LGFF +++S   ++    VD L+E +   Y+     TL RV+ SL     QIL+    N ++V H    + +R G LP  +++D
Sbjct:  132 IKPALTELNKLARLKWCLTQLQPSITQGKVHFHGMHNIVHIDEKWFYMTKTSDRYYLLPDEDEPYRS-CKSKRYITKVMFMCAVSRPQFDSEGQPTYDGKVGIFPFTEAVPAQRKSKNRDRG-TLETKPITTLN--KEVMRGCIIHKIIPAIKAKWPDWASKEIYIQQDNATPHITATDP-EFQAIANSDGFKIHLICQPPNSPDTNILDLGFFRAIQSLQHQKPCRNVDELVENVCKAYEELTPQTLNRVFLSLQACLTQILQFRGDNSYKVPHMNKDRLERTGGLPNVLEVD 420          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig8095.16108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.470e-5842.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I6THG9_PSEMU8.190e-3532.29Tranposase n=1 Tax=Pseudo-nitzschia multiseries Ta... [more]
UPI002008F0343.930e-3131.99uncharacterized protein LOC125206616 n=4 Tax=Salvi... [more]
UPI00200958F75.440e-3130.98uncharacterized protein LOC125195984 n=2 Tax=Salvi... [more]
A0A8I6XRQ9_HORVV6.420e-3130.35HTH_Tnp_Tc3_2 domain-containing protein n=1 Tax=Ho... [more]
UPI002009DA997.530e-3130.64uncharacterized protein LOC125209340 n=1 Tax=Salvi... [more]
J3S7K7_BETVV1.150e-3031.86Mariner transposase n=2 Tax=Beta vulgaris subsp. v... [more]
A0A448ZNT1_9STRA1.910e-3032.17Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
UPI001C2541F42.000e-3030.93uncharacterized protein LOC121800620 n=4 Tax=Salvi... [more]
UPI0020091A085.390e-3032.31uncharacterized protein LOC125206097 n=1 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig8095contigH-paniculata_contig8095:3513..4412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score70.9
Seed ortholog evalue5.3e-10
Seed eggNOG ortholog38727.Pavir.J07271.1.p
Hectar predicted targeting categoryother localisation
EggNOG OGs2CMKC@1,2QQNW@2759,37TMG@33090,3GG9M@35493,3IN47@38820,3M58A@4447
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons2
Model size885
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig8095.16108.1prot_H-paniculata_contig8095.16108.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig8095 3984..4391 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.7904058-UTR-H-paniculata_contig8095:3512..38961622931012.7904058-UTR-H-paniculata_contig8095:3512..3896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 3513..3896 -
1691481550.3783007-UTR-H-paniculata_contig8095:3512..38961691481550.3783007-UTR-H-paniculata_contig8095:3512..3896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 3513..3896 -
1622931012.8085914-UTR-H-paniculata_contig8095:3911..39831622931012.8085914-UTR-H-paniculata_contig8095:3911..3983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 3912..3983 -
1691481550.389736-UTR-H-paniculata_contig8095:3911..39831691481550.389736-UTR-H-paniculata_contig8095:3911..3983Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 3912..3983 -
1622931012.8648474-UTR-H-paniculata_contig8095:4391..44121622931012.8648474-UTR-H-paniculata_contig8095:4391..4412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 4392..4412 -
1691481550.4138656-UTR-H-paniculata_contig8095:4391..44121691481550.4138656-UTR-H-paniculata_contig8095:4391..4412Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig8095 4392..4412 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931012.85004-CDS-H-paniculata_contig8095:3983..43911622931012.85004-CDS-H-paniculata_contig8095:3983..4391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8095 3984..4391 -
1691481550.3997166-CDS-H-paniculata_contig8095:3983..43911691481550.3997166-CDS-H-paniculata_contig8095:3983..4391Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig8095 3984..4391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig8095.16108.1

>prot_H-paniculata_contig8095.16108.1 ID=prot_H-paniculata_contig8095.16108.1|Name=mRNA_H-paniculata_contig8095.16108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=136bp
MGATKAKRRITPPLSLTNRKNRVDFILDQAARHRITFRSGFQTIHIDETW
FYLNRDRDRVQLFSGKERVGSTKVEHKSYISKVMFICPVSRLDSSRDFDG
KIGIWRVCAIKQAQRISARRERGHQYEFDVIIDAG*
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mRNA from alignment at H-paniculata_contig8095:3513..4412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig8095.16108.1 ID=mRNA_H-paniculata_contig8095.16108.1|Name=mRNA_H-paniculata_contig8095.16108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=900bp|location=Sequence derived from alignment at H-paniculata_contig8095:3513..4412- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAGCGACGGCTTAAAGAGATGGGCGCCACGAAGGCGAAACGGCGCAT TACCCCACCTCTGTCACTGACGAACCGAAAGAACCGGGTAGACTTCATCC TGGACCAAGCAGCAAGGCACCGTATCACTTTCAGGAGCGGCTTCCAAACA ATTCACATCGATGAAACATGGTTTTACCTGAATCGCGACAGGGATCGCGT CCAATTGTTCTCCGGGAAGGAAAGGGTGGGGTCCACCAAAGTAGAGCACA AGAGTTACATTTCGAAGGTGATGTTCATCTGCCCCGTTTCGCGTCTAGAT TCTTCCCGCGATTTTGACGGTAAGATTGGAATTTGGCGTGTTTGCGCCAT CAAGCAGGCGCAGAGGATTTCGGCCCGGCGTGAACGGGGGCATCAATACG AGTTCGACGTGATCATTGACGCCGGATGATACCAGGAGTGGTACAAGGGC GCTTTTCTCCCAGTACTGAAGGAAAAGATGCCATGGTTGGAGGGTGAGGA AGTGGTCGCGTAGCAGGACCGAGCGACCCCCCACACGAGGAAAGACACGC CGCGAAAACTCAACGAACTCGGGAAGGACGGGGGGCGGAATGTCAATCTC GTAACTCAGCCTGCGCAGTCACCAGATCTCAACATCAACAATTTGGGGTT CTTTGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTACGGTACGGTAG ACGGTCTTCTGGAGAGGATAAAGAGCATGTACGATGCATTCGACCGGGCA ACCTTAGAGAGGGTGTGGCAGAGCCTCTTCCAGCGGTACAATCAGATCTT GAAGGCACTACGAGGTAACGATTTCGAGGTACAGCACACCGAAACCAAGA AAAGGCAGCGTGTGGGAAGTTTACCAAAATCGGTCAAAATCGACCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig8095:3513..4412-

>mRNA_H-paniculata_contig8095.16108.1 ID=mRNA_H-paniculata_contig8095.16108.1|Name=mRNA_H-paniculata_contig8095.16108.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at H-paniculata_contig8095:3513..4412- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGCCACGAAGGCGAAACGGCGCATTACCCCACCTCTGTCACTGAC
GAACCGAAAGAACCGGGTAGACTTCATCCTGGACCAAGCAGCAAGGCACC
GTATCACTTTCAGGAGCGGCTTCCAAACAATTCACATCGATGAAACATGG
TTTTACCTGAATCGCGACAGGGATCGCGTCCAATTGTTCTCCGGGAAGGA
AAGGGTGGGGTCCACCAAAGTAGAGCACAAGAGTTACATTTCGAAGGTGA
TGTTCATCTGCCCCGTTTCGCGTCTAGATTCTTCCCGCGATTTTGACGGT
AAGATTGGAATTTGGCGTGTTTGCGCCATCAAGCAGGCGCAGAGGATTTC
GGCCCGGCGTGAACGGGGGCATCAATACGAGTTCGACGTGATCATTGACG
CCGGATGAATGGGCGCCACGAAGGCGAAACGGCGCATTACCCCACCTCTG
TCACTGACGAACCGAAAGAACCGGGTAGACTTCATCCTGGACCAAGCAGC
AAGGCACCGTATCACTTTCAGGAGCGGCTTCCAAACAATTCACATCGATG
AAACATGGTTTTACCTGAATCGCGACAGGGATCGCGTCCAATTGTTCTCC
GGGAAGGAAAGGGTGGGGTCCACCAAAGTAGAGCACAAGAGTTACATTTC
GAAGGTGATGTTCATCTGCCCCGTTTCGCGTCTAGATTCTTCCCGCGATT
TTGACGGTAAGATTGGAATTTGGCGTGTTTGCGCCATCAAGCAGGCGCAG
AGGATTTCGGCCCGGCGTGAACGGGGGCATCAATACGAGTTCGACGTGAT
CATTGACGCCGGATGA
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