mRNA_H-paniculata_contig80642.16071.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig80642.16071.1
Unique NamemRNA_H-paniculata_contig80642.16071.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A836CKR4_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKR4_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 7.870e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNKSDLE KRAVTTEEAK
Sbjct:  108 RYACENVNKLLVGNKSDLEAKRAVTTEEAK 137
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: D7FNV2_ECTSI (Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNV2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 7.870e-9
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNKSDLE KRAVTTEEAK
Sbjct:  108 RYACENVNKLLVGNKSDLEAKRAVTTEEAK 137
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A835YQS3_9STRA (Ras related protein PiYpt1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQS3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 3.010e-8
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNKSDLE KRAVTTEE K
Sbjct:  108 RYACENVNKLLVGNKSDLEAKRAVTTEEGK 137
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: B8C362_THAPS (Ypt1-like rab-type small G protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=B8C362_THAPS)

HSP 1 Score: 55.5 bits (132), Expect = 7.910e-7
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNK DLEGKR V+TE+ K
Sbjct:  108 RYACENVNKLLVGNKCDLEGKRVVSTEQGK 137
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A0D8Y5V5_DICVI (Ras family protein n=2 Tax=Chromadorea TaxID=119089 RepID=A0A0D8Y5V5_DICVI)

HSP 1 Score: 54.3 bits (129), Expect = 9.090e-7
Identity = 26/32 (81.25%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAKVR 222
            RYACENVNKLLVGNK DL  KRAV T+ AKVR
Sbjct:  111 RYACENVNKLLVGNKCDLTAKRAVETQAAKVR 142
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A016U462_9BILA (Uncharacterized protein n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016U462_9BILA)

HSP 1 Score: 52.4 bits (124), Expect = 2.140e-6
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAKV 219
            RYACENVNKLLVGNK DL  KRAV T+ AKV
Sbjct:   51 RYACENVNKLLVGNKCDLTAKRAVETQAAKV 81
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A7S2HS85_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HS85_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.980e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNK DLE  R VTTE+AK
Sbjct:  108 RYACENVNKLLVGNKCDLESSRKVTTEQAK 137
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A223HE50_9STRA (Ras-related protein Ypt1 (Fragment) n=1 Tax=Phytophthora sp. TaxID=89336 RepID=A0A223HE50_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 5.130e-6
Identity = 27/44 (61.36%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   82 KKWLFSTLTNHPTGYRYACENVNKLLVGNKSDLEGKRAVTTEEA 213
            K+WL       P   RYACENVNKLLVGNKSDL  KR V+T+ A
Sbjct:   57 KQWL-------PEIDRYACENVNKLLVGNKSDLTAKRVVSTDAA 93
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BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: K3W769_GLOUD (Uncharacterized protein n=4 Tax=Oomycota TaxID=4762 RepID=K3W769_GLOUD)

HSP 1 Score: 53.1 bits (126), Expect = 5.680e-6
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNKSDL  KR V+TE AK
Sbjct:  108 RYACENVNKLLVGNKSDLTAKRVVSTEAAK 137
[Close]
BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Match: A0A4Y1NJP8_9STRA (Ras-related protein (Fragment) n=23 Tax=Phytophthora TaxID=4783 RepID=A0A4Y1NJP8_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 8.630e-6
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:  127 RYACENVNKLLVGNKSDLEGKRAVTTEEAK 216
            RYACENVNKLLVGNKSDL  KR V+T+ AK
Sbjct:   94 RYACENVNKLLVGNKSDLTAKRVVSTDAAK 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig80642.16071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CKR4_9STRA7.870e-996.67Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
D7FNV2_ECTSI7.870e-996.67Rab1B, RAB family GTPase n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YQS3_9STRA3.010e-893.33Ras related protein PiYpt1 n=1 Tax=Tribonema minus... [more]
B8C362_THAPS7.910e-783.33Ypt1-like rab-type small G protein n=3 Tax=Ochroph... [more]
A0A0D8Y5V5_DICVI9.090e-781.25Ras family protein n=2 Tax=Chromadorea TaxID=11908... [more]
A0A016U462_9BILA2.140e-680.65Uncharacterized protein n=1 Tax=Ancylostoma ceylan... [more]
A0A7S2HS85_9STRA2.980e-683.33Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A223HE50_9STRA5.130e-661.36Ras-related protein Ypt1 (Fragment) n=1 Tax=Phytop... [more]
K3W769_GLOUD5.680e-683.33Uncharacterized protein n=4 Tax=Oomycota TaxID=476... [more]
A0A4Y1NJP8_9STRA8.630e-680.00Ras-related protein (Fragment) n=23 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig80642contigH-paniculata_contig80642:4..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue4.8e-07
Seed eggNOG ortholog2880.D7FNV2
KEGG koko:K07874
KEGG Pathwayko05134,map05134
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0084@1,KOG0084@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04031,ko04131,ko04147
Exons1
Model size365
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.3371255-UTR-H-paniculata_contig80642:3..91622931007.3371255-UTR-H-paniculata_contig80642:3..9Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig80642 4..9 +
1691481548.2360835-UTR-H-paniculata_contig80642:3..91691481548.2360835-UTR-H-paniculata_contig80642:3..9Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig80642 4..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931007.3574257-CDS-H-paniculata_contig80642:9..3661622931007.3574257-CDS-H-paniculata_contig80642:9..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80642 10..366 +
1691481548.248312-CDS-H-paniculata_contig80642:9..3661691481548.248312-CDS-H-paniculata_contig80642:9..366Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig80642 10..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig80642.16071.1prot_H-paniculata_contig80642.16071.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig80642 10..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig80642.16071.1

>prot_H-paniculata_contig80642.16071.1 ID=prot_H-paniculata_contig80642.16071.1|Name=mRNA_H-paniculata_contig80642.16071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=119bp
MQTLSNLPKSGSSGKGFALAFRGLKKKWLFSTLTNHPTGYRYACENVNKL
LVGNKSDLEGKRAVTTEEAKVRDGDAWISTLAGSRSVRCVLSVAFGDKVR
FLAHIFGGLDFSVRRCGHI
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mRNA from alignment at H-paniculata_contig80642:4..366+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig80642.16071.1 ID=mRNA_H-paniculata_contig80642.16071.1|Name=mRNA_H-paniculata_contig80642.16071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=363bp|location=Sequence derived from alignment at H-paniculata_contig80642:4..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAAATGCAGACTCTCAGTAATCTTCCGAAGAGTGGAAGCAGCGGAAA
GGGTTTTGCCTTGGCCTTCCGGGGGTTAAAAAAAAAATGGCTCTTCTCAA
CCTTGACAAATCATCCTACGGGATATAGGTATGCGTGCGAAAACGTGAAC
AAGTTACTGGTGGGGAACAAGAGCGACCTTGAGGGTAAGCGTGCGGTCAC
GACGGAGGAGGCCAAGGTAAGGGATGGTGATGCCTGGATATCGACTTTAG
CGGGGTCGCGTAGCGTGAGGTGTGTCTTGAGTGTTGCGTTCGGTGACAAA
GTGAGATTCCTAGCACATATTTTTGGGGGGCTTGATTTTAGTGTCAGACG
GTGCGGACACATA
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Coding sequence (CDS) from alignment at H-paniculata_contig80642:4..366+

>mRNA_H-paniculata_contig80642.16071.1 ID=mRNA_H-paniculata_contig80642.16071.1|Name=mRNA_H-paniculata_contig80642.16071.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=714bp|location=Sequence derived from alignment at H-paniculata_contig80642:4..366+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGACTCTCAGTAATCTTCCGAAGAGTGGAAGCAGCGGAAAGGGTTT
TGCCTTGGCCTTCCGGGGGTTAAAAAAAAAATGGCTCTTCTCAACCTTGA
CAAATCATCCTACGGGATATAGGTATGCGTGCGAAAACGTGAACAAGTTA
CTGGTGGGGAACAAGAGCGACCTTGAGGGTAAGCGTGCGGTCACGACGGA
GGAGGCCAAGGTAAGGGATGGTGATGCCTGGATATCGACTTTAGCGGGGT
CGCGTAGCGTGAGGTGTGTCTTGAGTGTTGCGTTCGGTGACAAAGTGAGA
TTCCTAGCACATATTTTTGGGGGGCTTGATTTTAGTGTCAGACGGTGCGG
ACACATAATGCAGACTCTCAGTAATCTTCCGAAGAGTGGAAGCAGCGGAA
AGGGTTTTGCCTTGGCCTTCCGGGGGTTAAAAAAAAAATGGCTCTTCTCA
ACCTTGACAAATCATCCTACGGGATATAGGTATGCGTGCGAAAACGTGAA
CAAGTTACTGGTGGGGAACAAGAGCGACCTTGAGGGTAAGCGTGCGGTCA
CGACGGAGGAGGCCAAGGTAAGGGATGGTGATGCCTGGATATCGACTTTA
GCGGGGTCGCGTAGCGTGAGGTGTGTCTTGAGTGTTGCGTTCGGTGACAA
AGTGAGATTCCTAGCACATATTTTTGGGGGGCTTGATTTTAGTGTCAGAC
GGTGCGGACACATA
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