prot_H-paniculata_contig79542.15981.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig79542.15981.1
Unique Nameprot_H-paniculata_contig79542.15981.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length125
Homology
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 228 bits (582), Expect = 1.490e-75
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKPIK 124
            MPTIQQLIR++R KI+ R KSPALK+CPQRRGVCTRV+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDT+GVKDRRQGRSKYG+KKP+K
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.740e-74
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKPIK 124
            MPTIQQL+R  RKK+Q RTKSPALK+CPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYH++RGTLD+IGVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A8E5XRI9_9PHAE (30S ribosomal protein S12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.430e-73
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR+ RKKIQPRTKSPALKSCPQRRGVCTRVYTI PKKPNSA+RKVARVRLTSGFEVTAYIPG+ H LQEHSVVLLRGGRVKDLPGVRYHIIRGTLD+ GVK+RRQGRSKYG+KKP
Sbjct:    1 MPTIQQLIRVPRKKIQPRTKSPALKSCPQRRGVCTRVYTIAPKKPNSAVRKVARVRLTSGFEVTAYIPGVDHTLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDSGGVKNRRQGRSKYGVKKP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 222 bits (566), Expect = 4.100e-73
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR +R+KI+ +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 1.670e-72
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIRL+RKKI  +TKSPALK CPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQGRSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A385KE48_9EMBR (30S ribosomal protein S12, chloroplastic n=6 Tax=Embryophyta TaxID=3193 RepID=A0A385KE48_9EMBR)

HSP 1 Score: 220 bits (560), Expect = 3.260e-72
Identity = 106/122 (86.89%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR QRK ++ RTKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRNQRKLVKNRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 219 bits (559), Expect = 4.780e-72
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR +R+K + +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: RR12_CHLAT (30S ribosomal protein S12, chloroplastic n=10 Tax=Viridiplantae TaxID=33090 RepID=RR12_CHLAT)

HSP 1 Score: 218 bits (556), Expect = 1.330e-71
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR QRKK++ +TKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RG LDT GVKDR QGRSKYG+K+P
Sbjct:    1 MPTIQQLIRSQRKKVEKKTKSPALRGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGILDTAGVKDRSQGRSKYGVKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQL+R +RKK   +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+LRGGRVKDLPGVRYHI+RGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 218 bits (554), Expect = 2.680e-71
Identity = 104/122 (85.25%), Postives = 117/122 (95.90%), Query Frame = 0 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 122
            MPTIQQLIR +R+ ++ RTKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0NH41_9CYAN1.490e-7591.1330S ribosomal protein S12 n=53 Tax=cellular organi... [more]
A0A7S6U9Z3_9STRA1.740e-7490.3230S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A8E5XRI9_9PHAE1.430e-7390.9830S ribosomal protein S12, chloroplastic n=1 Tax=I... [more]
K9TNW7_9CYAN4.100e-7389.3430S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A3G1IVK8_9EUKA1.670e-7290.16Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
A0A385KE48_9EMBR3.260e-7286.8930S ribosomal protein S12, chloroplastic n=6 Tax=E... [more]
K9S9M0_9CYAN4.780e-7288.5230S ribosomal protein S12 n=17 Tax=cellular organi... [more]
RR12_CHLAT1.330e-7186.8930S ribosomal protein S12, chloroplastic n=10 Tax=... [more]
A0A0P8BUW8_9CYAN1.370e-7187.7030S ribosomal protein S12 n=11 Tax=cellular organi... [more]
RR12_ANTAG2.680e-7185.2530S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 58..77
score: 75.97
coord: 77..94
score: 86.11
coord: 27..42
score: 76.04
coord: 94..110
score: 64.71
coord: 110..122
score: 71.9
coord: 42..57
score: 86.63
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 12..122
e-value: 3.2E-42
score: 142.7
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 1..124
e-value: 4.3E-54
score: 179.3
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..122
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 43..50
NoneNo IPR availableGENE3D2.40.50.140coord: 1..124
e-value: 3.1E-64
score: 216.5
NoneNo IPR availablePANTHERPTHR11652:SF128S RIBOSOMAL PROTEIN S12, MITOCHONDRIALcoord: 1..122
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 1..122
e-value: 2.1E-68
score: 225.9
IPR005679Ribosomal protein S12, bacterial-typeHAMAPMF_00403_BRibosomal_S12_Bcoord: 1..124
score: 39.447
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79542contigH-paniculata_contig79542:26..400 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79542.15981.1mRNA_H-paniculata_contig79542.15981.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig79542 26..400 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig79542.15981.1 ID=prot_H-paniculata_contig79542.15981.1|Name=mRNA_H-paniculata_contig79542.15981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRG
TLDTIGVKDRRQGRSKYGIKKPIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
IPR012340NA-bd_OB-fold