mRNA_H-paniculata_contig79542.15981.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig79542.15981.1
Unique NamemRNA_H-paniculata_contig79542.15981.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 228 bits (582), Expect = 1.490e-75
Identity = 113/124 (91.13%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKPIK 372
            MPTIQQLIR++R KI+ R KSPALK+CPQRRGVCTRV+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDT+GVKDRRQGRSKYG+KKP+K
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.740e-74
Identity = 112/124 (90.32%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKPIK 372
            MPTIQQL+R  RKK+Q RTKSPALK+CPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYH++RGTLD+IGVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A8E5XRI9_9PHAE (30S ribosomal protein S12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI9_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.430e-73
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR+ RKKIQPRTKSPALKSCPQRRGVCTRVYTI PKKPNSA+RKVARVRLTSGFEVTAYIPG+ H LQEHSVVLLRGGRVKDLPGVRYHIIRGTLD+ GVK+RRQGRSKYG+KKP
Sbjct:    1 MPTIQQLIRVPRKKIQPRTKSPALKSCPQRRGVCTRVYTIAPKKPNSAVRKVARVRLTSGFEVTAYIPGVDHTLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDSGGVKNRRQGRSKYGVKKP 122
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 222 bits (566), Expect = 4.100e-73
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR +R+KI+ +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 221 bits (562), Expect = 1.670e-72
Identity = 110/122 (90.16%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIRL+RKKI  +TKSPALK CPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQGRSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A385KE48_9EMBR (30S ribosomal protein S12, chloroplastic n=6 Tax=Embryophyta TaxID=3193 RepID=A0A385KE48_9EMBR)

HSP 1 Score: 220 bits (560), Expect = 3.260e-72
Identity = 106/122 (86.89%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR QRK ++ RTKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRNQRKLVKNRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 219 bits (559), Expect = 4.780e-72
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR +R+K + +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: RR12_CHLAT (30S ribosomal protein S12, chloroplastic n=10 Tax=Viridiplantae TaxID=33090 RepID=RR12_CHLAT)

HSP 1 Score: 218 bits (556), Expect = 1.330e-71
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR QRKK++ +TKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RG LDT GVKDR QGRSKYG+K+P
Sbjct:    1 MPTIQQLIRSQRKKVEKKTKSPALRGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGILDTAGVKDRSQGRSKYGVKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQL+R +RKK   +TKSPALKSCPQRRGVCTRVYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+LRGGRVKDLPGVRYHI+RGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
[Close]
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 218 bits (554), Expect = 2.680e-71
Identity = 104/122 (85.25%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGIKKP 366
            MPTIQQLIR +R+ ++ RTKSPAL+ CPQRRGVCTRVYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig79542.15981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0NH41_9CYAN1.490e-7591.1330S ribosomal protein S12 n=53 Tax=cellular organi... [more]
A0A7S6U9Z3_9STRA1.740e-7490.3230S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A8E5XRI9_9PHAE1.430e-7390.9830S ribosomal protein S12, chloroplastic n=1 Tax=I... [more]
K9TNW7_9CYAN4.100e-7389.3430S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A3G1IVK8_9EUKA1.670e-7290.16Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
A0A385KE48_9EMBR3.260e-7286.8930S ribosomal protein S12, chloroplastic n=6 Tax=E... [more]
K9S9M0_9CYAN4.780e-7288.5230S ribosomal protein S12 n=17 Tax=cellular organi... [more]
RR12_CHLAT1.330e-7186.8930S ribosomal protein S12, chloroplastic n=10 Tax=... [more]
A0A0P8BUW8_9CYAN1.370e-7187.7030S ribosomal protein S12 n=11 Tax=cellular organi... [more]
RR12_ANTAG2.680e-7185.2530S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig79542contigH-paniculata_contig79542:26..400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score241.1
Seed ortholog evalue2.7e-61
Seed eggNOG ortholog2880.D1J727
Preferred namerps12
KEGG koko:K02950,ko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0019538,GO:0031976,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930992.3336298-CDS-H-paniculata_contig79542:25..4001622930992.3336298-CDS-H-paniculata_contig79542:25..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79542 26..400 +
1691481541.6690528-CDS-H-paniculata_contig79542:25..4001691481541.6690528-CDS-H-paniculata_contig79542:25..400Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig79542 26..400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig79542.15981.1prot_H-paniculata_contig79542.15981.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig79542 26..400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig79542.15981.1

>prot_H-paniculata_contig79542.15981.1 ID=prot_H-paniculata_contig79542.15981.1|Name=mRNA_H-paniculata_contig79542.15981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MPTIQQLIRLQRKKIQPRTKSPALKSCPQRRGVCTRVYTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRG
TLDTIGVKDRRQGRSKYGIKKPIK*
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mRNA from alignment at H-paniculata_contig79542:26..400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig79542.15981.1 ID=mRNA_H-paniculata_contig79542.15981.1|Name=mRNA_H-paniculata_contig79542.15981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=375bp|location=Sequence derived from alignment at H-paniculata_contig79542:26..400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACTATACAACAATTAATAAGATTACAACGTAAGAAAATTCAGCC
ACGAACAAAATCACCTGCATTAAAAAGTTGTCCACAACGTAGAGGAGTCT
GTACCCGTGTATATACGATAACACCTAAAAAACCAAATTCTGCAATAAGA
AAAGTTGCAAGAGTAAGATTGACTTCTGGGTTTGAAGTTACAGCTTATAT
TCCTGGTATTGGACACAATTTACAAGAACATTCTGTGGTTTTATTACGTG
GAGGTCGGGTAAAGGACTTACCTGGTGTACGGTATCATATAATTCGTGGT
ACCCTTGACACAATTGGAGTTAAAGATAGACGTCAAGGACGATCAAAATA
TGGAATCAAAAAACCAATAAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig79542:26..400+

>mRNA_H-paniculata_contig79542.15981.1 ID=mRNA_H-paniculata_contig79542.15981.1|Name=mRNA_H-paniculata_contig79542.15981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig79542:26..400+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAACTATACAACAATTAATAAGATTACAACGTAAGAAAATTCAGCC
ACGAACAAAATCACCTGCATTAAAAAGTTGTCCACAACGTAGAGGAGTCT
GTACCCGTGTATATACGATAACACCTAAAAAACCAAATTCTGCAATAAGA
AAAGTTGCAAGAGTAAGATTGACTTCTGGGTTTGAAGTTACAGCTTATAT
TCCTGGTATTGGACACAATTTACAAGAACATTCTGTGGTTTTATTACGTG
GAGGTCGGGTAAAGGACTTACCTGGTGTACGGTATCATATAATTCGTGGT
ACCCTTGACACAATTGGAGTTAAAGATAGACGTCAAGGACGATCAAAATA
TGGAATCAAAAAACCAATAAAATAAATGCCAACTATACAACAATTAATAA
GATTACAACGTAAGAAAATTCAGCCACGAACAAAATCACCTGCATTAAAA
AGTTGTCCACAACGTAGAGGAGTCTGTACCCGTGTATATACGATAACACC
TAAAAAACCAAATTCTGCAATAAGAAAAGTTGCAAGAGTAAGATTGACTT
CTGGGTTTGAAGTTACAGCTTATATTCCTGGTATTGGACACAATTTACAA
GAACATTCTGTGGTTTTATTACGTGGAGGTCGGGTAAAGGACTTACCTGG
TGTACGGTATCATATAATTCGTGGTACCCTTGACACAATTGGAGTTAAAG
ATAGACGTCAAGGACGATCAAAATATGGAATCAAAAAACCAATAAAATAA
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