mRNA_H-paniculata_contig78855.15907.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig78855.15907.1
Unique Name	mRNA_H-paniculata_contig78855.15907.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5K523_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K523_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.520e-16
Identity = 50/152 (32.89%), Postives = 80/152 (52.63%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +LA MGE  S+ R+ DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:   70 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLAKMGENISDRRIKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 214

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5JXA1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA1_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.900e-16
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.220e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  131 DGQAAFAELKANYNRLTDEAIRAELDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 275

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5KN28_9PHAE (Uncharacterized protein (Fragment) n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN28_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.830e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.900e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 2.980e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRVFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.040e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.040e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.120e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

[Close]

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.120e-15
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 1

Query:    1 NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLRGELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMHNMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMRDC 456
            +GQ A+  L A Y   + +  R  +  L+   M+  ++PD F     +LR +L  MGE  S+ R  DI ++G ++ Y+ IK    RDP F + +++ATM N+F +  +R+ +  +  GR  AM   TS          C  C + GHV R+C
Sbjct:  112 DGQAAFAELKANYNRVTDEVIRAKLDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKTSGP-------ICFECNEPGHVRRNC 256

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig78855.15907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K523_9PHAE	2.520e-16	32.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXA1_9PHAE	6.900e-16	32.24	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JUN9_9PHAE	2.220e-15	32.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN28_9PHAE	2.830e-15	32.24	Uncharacterized protein (Fragment) n=3 Tax=Ectocar...	[more]
A0A6H5KJB9_9PHAE	2.900e-15	32.24	Uncharacterized protein (Fragment) n=2 Tax=Ectocar...	[more]
A0A6H5K4S9_9PHAE	2.980e-15	32.24	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5K3T5_9PHAE	3.040e-15	32.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L1Z9_9PHAE	3.040e-15	32.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTQ0_9PHAE	3.120e-15	32.24	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KHG5_9PHAE	3.120e-15	32.24	Uncharacterized protein n=11 Tax=Ectocarpus sp. CC...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig78855	contig	H-paniculata_contig78855:75..536 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	462
Cds size	462
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930980.845392-CDS-H-paniculata_contig78855:74..536	1622930980.845392-CDS-H-paniculata_contig78855:74..536	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig78855 75..536 +
1691481536.933327-CDS-H-paniculata_contig78855:74..536	1691481536.933327-CDS-H-paniculata_contig78855:74..536	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig78855 75..536 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig78855.15907.1	prot_H-paniculata_contig78855.15907.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig78855 75..536 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig78855:75..536+
coding sequence from alignment at H-paniculata_contig78855:75..536+

protein sequence of mRNA_H-paniculata_contig78855.15907.1

>prot_H-paniculata_contig78855.15907.1 ID=prot_H-paniculata_contig78855.15907.1|Name=mRNA_H-paniculata_contig78855.15907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
NGQLAWDGLIAKYQNSSKQRRRILIRQLDGMAMKQDQDPDVFLAHVFQLR
GELAHMGEEHSEERLTDIVLEGLTDAYEQIKYNAERDPDFSINEIEATMH
NMFANHVVREGSPRKSGGRESAMVATTSASKSVKFKGKCHSCGKVGHVMR
DCRS

mRNA from alignment at H-paniculata_contig78855:75..536+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig78855.15907.1 ID=mRNA_H-paniculata_contig78855.15907.1|Name=mRNA_H-paniculata_contig78855.15907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=462bp|location=Sequence derived from alignment at H-paniculata_contig78855:75..536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTCAATTAGCGTGGGACGGCTTGATTGCAAAATACCAAAATTCTTC
GAAACAGAGACGCCGTATTTTAATACGACAGCTAGATGGCATGGCCATGA
AGCAGGATCAGGACCCCGACGTTTTTTTGGCCCATGTTTTTCAGCTTAGG
GGCGAACTAGCTCACATGGGGGAAGAACATTCTGAAGAGCGATTGACAGA
TATTGTTCTGGAAGGTCTGACTGATGCCTATGAACAAATAAAATATAATG
CGGAGCGTGACCCTGATTTTAGCATCAATGAAATTGAGGCCACAATGCAC
AATATGTTTGCCAATCATGTAGTTCGAGAGGGTTCTCCACGTAAATCTGG
AGGACGGGAATCTGCCATGGTGGCAACAACATCAGCATCAAAATCAGTAA
AATTCAAGGGCAAGTGCCACTCCTGTGGCAAAGTTGGTCATGTTATGCGT
GATTGTCGTTCA

Coding sequence (CDS) from alignment at H-paniculata_contig78855:75..536+

>mRNA_H-paniculata_contig78855.15907.1 ID=mRNA_H-paniculata_contig78855.15907.1|Name=mRNA_H-paniculata_contig78855.15907.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig78855:75..536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGTCAATTAGCGTGGGACGGCTTGATTGCAAAATACCAAAATTCTTC
GAAACAGAGACGCCGTATTTTAATACGACAGCTAGATGGCATGGCCATGA
AGCAGGATCAGGACCCCGACGTTTTTTTGGCCCATGTTTTTCAGCTTAGG
GGCGAACTAGCTCACATGGGGGAAGAACATTCTGAAGAGCGATTGACAGA
TATTGTTCTGGAAGGTCTGACTGATGCCTATGAACAAATAAAATATAATG
CGGAGCGTGACCCTGATTTTAGCATCAATGAAATTGAGGCCACAATGCAC
AATATGTTTGCCAATCATGTAGTTCGAGAGGGTTCTCCACGTAAATCTGG
AGGACGGGAATCTGCCATGGTGGCAACAACATCAGCATCAAAATCAGTAA
AATTCAAGGGCAAGTGCCACTCCTGTGGCAAAGTTGGTCATGTTATGCGT
GATTGTCGTTCAAACGGTCAATTAGCGTGGGACGGCTTGATTGCAAAATA
CCAAAATTCTTCGAAACAGAGACGCCGTATTTTAATACGACAGCTAGATG
GCATGGCCATGAAGCAGGATCAGGACCCCGACGTTTTTTTGGCCCATGTT
TTTCAGCTTAGGGGCGAACTAGCTCACATGGGGGAAGAACATTCTGAAGA
GCGATTGACAGATATTGTTCTGGAAGGTCTGACTGATGCCTATGAACAAA
TAAAATATAATGCGGAGCGTGACCCTGATTTTAGCATCAATGAAATTGAG
GCCACAATGCACAATATGTTTGCCAATCATGTAGTTCGAGAGGGTTCTCC
ACGTAAATCTGGAGGACGGGAATCTGCCATGGTGGCAACAACATCAGCAT
CAAAATCAGTAAAATTCAAGGGCAAGTGCCACTCCTGTGGCAAAGTTGGT
CATGTTATGCGTGATTGTCGTTCA