mRNA_H-paniculata_contig7829.15852.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7829.15852.1
Unique NamemRNA_H-paniculata_contig7829.15852.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: D8LE55_ECTSI (AAA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE55_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 1.190e-78
Identity = 130/194 (67.01%), Postives = 152/194 (78.35%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREVK 582
            A CSGMDCA+MSGGDV PLG +AVTELH LFRWA KS RGLLLFIDEAEAFLGKR  P+MSE TRNALNALLYNTG+ S RLMMVLATNRAEDLDEAVLDRMDD+LLFPIPD+++RA+LLVQYFHKYC++G         +S G+  GL      WW       + + ++ GVD+RL+ GLA ++ GFSGREV+
Sbjct:  283 AACSGMDCAVMSGGDVAPLGKNAVTELHSLFRWAAKSPRGLLLFIDEAEAFLGKRSRPDMSEGTRNALNALLYNTGSASRRLMMVLATNRAEDLDEAVLDRMDDSLLFPIPDRKSRAQLLVQYFHKYCATG------KDGRSIGAGWGLSSKISGWWRGSS--AEGLTIDVGVDERLVKGLAEEVQGFSGREVE 468          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A835Z4U6_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4U6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 1.420e-60
Identity = 114/195 (58.46%), Postives = 131/195 (67.18%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEW--PWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREV 579
            A CSGMD AIMSGGDVGPLG DAVTELH LF WA +S RG+LLFIDEAEAFLG R S  +SEDTRNALNALLY TGT SH  M+VLATNRAEDLDEAVLDRMDD+LLFP+PD   R +LL  YF  Y +S +      +S   G R GL    W   W      R   + V+ G+ +  +      + GFSGRE+
Sbjct:  246 AACSGMDYAIMSGGDVGPLGKDAVTELHSLFAWARRSKRGVLLFIDEAEAFLGSRSSSTLSEDTRNALNALLYQTGTASHSFMLVLATNRAEDLDEAVLDRMDDSLLFPLPDVEARRQLLALYFRSYIASLV------ASPDDGERQGL---RWLVRWGGGCAGR---ITVDAGIGEDQVCSFTKQVEGFSGREI 428          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A6H5JZK9_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZK9_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.610e-49
Identity = 114/213 (53.52%), Postives = 138/213 (64.79%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDT------LLF----PIPDKRTR------ARLLV---QYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREVK 582
            A  SGMDCA+MSGGDV PLG +AVTELH LFRWA KS RGLLLFIDEAEAFLGKR  P+MSE TRNALNALLYNTG+ S RLMMVLATNRAE +++  L+           LLF     + D+         +RLLV   QYFHKYC++G    ++ SS   G   GL      WW       + + ++ GVD+ L+ GLA ++ GFSGREV+
Sbjct:  275 AAYSGMDCAVMSGGDVAPLGKNAVTELHGLFRWAAKSPRGLLLFIDEAEAFLGKRSRPDMSEGTRNALNALLYNTGSASRRLMMVLATNRAE-VNKHQLEVSSTAPGPGGHLLFIRSIVLHDRTVLLLVHVVSRLLVSLSQYFHKYCATG----KDGSSIDTGW--GLFSKLSRWWRGSS--AEGLTIDVGVDECLVKGLAEEVQGFSGREVE 478          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A482RKE4_9ARCH (AAA family ATPase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RKE4_9ARCH)

HSP 1 Score: 171 bits (432), Expect = 1.910e-49
Identity = 95/193 (49.22%), Postives = 118/193 (61.14%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREV 579
            A+ SGMD AIMSGGDVGPLG DAVT+LH +F WA  S RGLLLFIDEA+AFL  R    MSED RNALNALL+ TG  ++R M+VLATNR  DLD AV DR+D++++F +PD+  R  L+ QY+ KY                   AG  +     W  + R    ++V+  V    L  LA    GFSGRE+
Sbjct:   19 ARTSGMDYAIMSGGDVGPLGRDAVTQLHAMFDWATTSRRGLLLFIDEADAFLASRSRAQMSEDQRNALNALLFRTGEANNRFMLVLATNRPGDLDRAVSDRVDESIVFDLPDEPARELLIKQYYQKYIVD----------------AGKDVTGPLAW--LRRSAAAIKVDDSVTPEYLTALAKRTAGFSGREI 193          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A812LTK1_9DINO (Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812LTK1_9DINO)

HSP 1 Score: 172 bits (437), Expect = 6.000e-48
Identity = 100/193 (51.81%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREV 579
            A+ SGMD AIMSGGDVGPLG +AVTELHRLF +AE+S RG+LLFIDEA+AFL  R    MSE+ RNALNALL+ TG  S R MMVLATNR  DLD AVLDR D++LLF +PD   R  L+ QYF KY +        SS    G   G             +R   + ++ G  D  L  +A    GFSGR +
Sbjct:  262 ARSSGMDYAIMSGGDVGPLGKEAVTELHRLFDYAERSQRGMLLFIDEADAFLASRSKAAMSEEQRNALNALLFRTGEASDRFMMVLATNRPGDLDSAVLDRTDESLLFDLPDAEARKALVRQYFKKYITDA-----GSSGSGVGGLMGF------------KRSAKIILDSGFSDEWLDRVAERTEGFSGRGI 437          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A6G0Q5C4_9STRA (AAA domain-containing protein (Fragment) n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0Q5C4_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.100e-47
Identity = 88/153 (57.52%), Postives = 111/153 (72.55%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCS--PNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGL 453
            A+ SGMD AI+SGGDVGPLG+DAVTELH LF+WA  S RG+L+FIDEAEAFLG R +   +MSE  RNALNALLY+TGT S + M+V+ATNR EDLD AV DR+DDTL F +P+ + R RLL  YF +Y +        +S K +  +A + +
Sbjct:  113 ARASGMDYAILSGGDVGPLGSDAVTELHALFKWANSSPRGVLIFIDEAEAFLGCRATRKTHMSEAMRNALNALLYHTGTQSKKFMLVVATNRPEDLDTAVTDRIDDTLHFDLPETKERVRLLQMYFDEYVAPLAAPPAATSLKGKTDKASVSV 265          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A7S1CAP0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CAP0_9STRA)

HSP 1 Score: 169 bits (428), Expect = 7.080e-47
Identity = 94/193 (48.70%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREV 579
            A+  G+D A+MSGGDV PLG++AVTELH+LF WA  + RGLLLFIDE +AFLG R    +SED RNALNALLY TGTP+ + M+V+ATNR  DLD AV DR+D+ + F +PD   R +LL QYF +Y                G +AG GL         ++R   + V   +DD   A LA    GFSGR +
Sbjct:  226 ARHCGLDYAVMSGGDVAPLGSNAVTELHKLFDWANTTGRGLLLFIDEGDAFLGSRARVGLSEDQRNALNALLYRTGTPTSKFMLVVATNRPGDLDAAVTDRIDEAMWFGLPDLELREKLLRQYFGEYLVRA------------GEKAGTGLVG-----AFKKRAARIDVAADIDDAYFADLARRTEGFSGRGI 401          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A836BDH2_9CHLO (AAA domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A836BDH2_9CHLO)

HSP 1 Score: 171 bits (434), Expect = 1.000e-46
Identity = 103/196 (52.55%), Postives = 126/196 (64.29%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCS-SGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRR--DIMRVEKGVDDRLLAGLAADLCGFSGREV 579
            A+ SGMD AIMSGGDV PL   AVT+LH+ F WAEKS RGLLLFIDEA+AFLG+R S  MSE  R ALNA+L+ TG  S   M+VLATNR  DLD+AVLDRMD+ L F +PD   R RLL  Y  KY + +G  E    + KS G  + LG      W    R+   D++ +E G+++ LLA  A    GFS RE+
Sbjct:  372 ARTSGMDYAIMSGGDVAPLEGKAVTQLHQTFDWAEKSRRGLLLFIDEADAFLGRR-SDAMSEGLRGALNAMLFRTGDQSRDFMVVLATNRPGDLDDAVLDRMDEALEFGLPDVAERQRLLALYLDKYIAKAGTDEGGAGAGKSGGPLSRLG------WLLKGRKSAADVIEIEPGINEALLAATAKATEGFSAREL 560          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A8J2SN09_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SN09_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.780e-46
Identity = 93/194 (47.94%), Postives = 121/194 (62.37%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWPWWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREVK 582
            AK SG++ A+MSGGDVGPLG+D VT LH LFRWA  S  G+L+FIDEAEAFL  R    ++E  RNALNA LY TG+P+   ++VLATNRAEDLDEAVLDR+D+TL F +P    R +L+  Y+  YC+S +  + +   K               W  + R    ++V K V   LL  +A D   FSGRE++
Sbjct:  942 AKASGLEYALMSGGDVGPLGSDGVTALHTLFRWARTSETGVLVFIDEAEAFLASRSRAKLTEHMRNALNAFLYQTGSPTTSFVLVLATNRAEDLDEAVLDRVDETLYFGLPAFAARDKLVRLYYDVYCASLIERKRHFLKKI--------------WDAVRRAPASLKVTKDVTPALLGEVARDTDDFSGREIE 1121          
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Match: A0A7S1G781_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G781_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.190e-46
Identity = 92/152 (60.53%), Postives = 108/152 (71.05%), Query Frame = 1
Query:    1 AKCSGMDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKRCSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDTLLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLP 456
            AK SGMD AIM+GGDVGPLG DA TELH+LF WA+ S RGLLLFIDEAEAFLG R S NMSE  RN L+ALLY+TG  S + M+V ATNR  DLD AV DRMD+TLLFP+P +  R R++ QY+  +  S    R +    SRG+    GLP
Sbjct:   12 AKSSGMDYAIMTGGDVGPLGRDATTELHKLFEWAKTSDRGLLLFIDEAEAFLGTR-SRNMSEHLRNVLSALLYHTGEQSDKFMIVTATNRPGDLDSAVTDRMDETLLFPLPSQSERLRMVHQYYQLHILS----RADVDDASRGTG---GLP 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7829.15852.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE55_ECTSI1.190e-7867.01AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z4U6_9STRA1.420e-6058.46P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5JZK9_9PHAE1.610e-4953.52AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A482RKE4_9ARCH1.910e-4949.22AAA family ATPase n=1 Tax=archaeon TaxID=1906665 R... [more]
A0A812LTK1_9DINO6.000e-4851.81Atad3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A6G0Q5C4_9STRA1.100e-4757.52AAA domain-containing protein (Fragment) n=3 Tax=P... [more]
A0A7S1CAP0_9STRA7.080e-4748.70Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A836BDH2_9CHLO1.000e-4652.55AAA domain-containing protein n=3 Tax=Chlamydomona... [more]
A0A8J2SN09_9STRA1.780e-4647.94Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1G781_9STRA2.190e-4660.53Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7829contigH-paniculata_contig7829:7260..9536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score244.2
Seed ortholog evalue5.1e-62
Seed eggNOG ortholog2880.D8LE55
KEGG koko:K17681
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrion organization
EggNOG OGsCOG1223@1,KOG0742@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons4
Model size606
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7829.15852.1prot_H-paniculata_contig7829.15852.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7829 7275..9536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.3893082-UTR-H-paniculata_contig7829:7259..72741622930973.3893082-UTR-H-paniculata_contig7829:7259..7274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7829 7260..7274 +
1691481534.0757785-UTR-H-paniculata_contig7829:7259..72741691481534.0757785-UTR-H-paniculata_contig7829:7259..7274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7829 7260..7274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930973.4058864-CDS-H-paniculata_contig7829:7274..73751622930973.4058864-CDS-H-paniculata_contig7829:7274..7375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 7275..7375 +
1691481534.0879304-CDS-H-paniculata_contig7829:7274..73751691481534.0879304-CDS-H-paniculata_contig7829:7274..7375Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 7275..7375 +
1622930973.441164-CDS-H-paniculata_contig7829:7747..79071622930973.441164-CDS-H-paniculata_contig7829:7747..7907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 7748..7907 +
1691481534.0988076-CDS-H-paniculata_contig7829:7747..79071691481534.0988076-CDS-H-paniculata_contig7829:7747..7907Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 7748..7907 +
1622930973.4639535-CDS-H-paniculata_contig7829:8493..85831622930973.4639535-CDS-H-paniculata_contig7829:8493..8583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 8494..8583 +
1691481534.1082964-CDS-H-paniculata_contig7829:8493..85831691481534.1082964-CDS-H-paniculata_contig7829:8493..8583Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 8494..8583 +
1622930973.4759648-CDS-H-paniculata_contig7829:9296..95361622930973.4759648-CDS-H-paniculata_contig7829:9296..9536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 9297..9536 +
1691481534.1179242-CDS-H-paniculata_contig7829:9296..95361691481534.1179242-CDS-H-paniculata_contig7829:9296..9536Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7829 9297..9536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7829.15852.1

>prot_H-paniculata_contig7829.15852.1 ID=prot_H-paniculata_contig7829.15852.1|Name=mRNA_H-paniculata_contig7829.15852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=197bp
MDCAIMSGGDVGPLGNDAVTELHRLFRWAEKSSRGLLLFIDEAEAFLGKR
CSPNMSEDTRNALNALLYNTGTPSHRLMMVLATNRAEDLDEAVLDRMDDT
LLFPIPDKRTRARLLVQYFHKYCSSGLRERENSSSKSRGSRAGLGLPEWP
WWPRIERRRDIMRVEKGVDDRLLAGLAADLCGFSGREVKGESQVHT*
back to top

mRNA from alignment at H-paniculata_contig7829:7260..9536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7829.15852.1 ID=mRNA_H-paniculata_contig7829.15852.1|Name=mRNA_H-paniculata_contig7829.15852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2277bp|location=Sequence derived from alignment at H-paniculata_contig7829:7260..9536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAAAATGCTCCGGAATGGACTGCGCTATCATGAGCGGCGGCGACGTAGG TCCTCTGGGAAATGACGCTGTGACGGAGCTTCACCGCTTGTTTCGCTGGG CTGAAAAGTCTTCCAGGTCTGCCAGCAGCAGCAGCAGCAGCAGCAGCAGC ACTATAGCCAGCCCCTTCCCGTCGATTGAGATTCTTCATGTTTTCCCATT TAGGTCTTCCTCTAGTTCTTCCCCAAGATTGTATATATCCACGCGATGCA TGACCTATGGGTCTTCAGGACGCCAAGTTGTGCATATTGCACACGCATTT GCGATCGGTATGATTTATCTGGTATGAGACGTCATGCCTCGTTTTGGTTA CTAGAGAAGTCTTATTGTTTTGAGTTTGACAAGTACTATTACTTAGAAGC TGTAGGGTCAGGGCACATTGGCCCGTCACATCGAATCCGTCGTCACGTGT TCACATGGTCATCGTACCCTTTTCTTCTCATTTCACAGAGGATTGCTACT GTTCATTGACGAGGCCGAGGCGTTTTTGGGCAAGCGGTGCAGTCCAAACA TGTCGGAGGACACTCGCAATGCTCTCAACGCTCTCTTGTACAACACTGGT ACTCCTAGTCACCGCTTGATGATGGTCTTGGCTACCAATAGGGCAGAGGT GAGCGAATCACCGTGACTTTGTAGCATAGCTTACATAATATTATCGTGTA GACTTTAGAGCACGTTCACCCGGAGGGGGCGGGAGGGAGGAGAGCTGTGG GGGCATCAAGTGCCCGGATCGTTCGCATAGCTTGATGTGGATACAGCGCG CCAACAGTTCCGTCTAATAGGGAGAATAAATTAACGTACTCCTCGCGCTA TAGCTATTTTCGTGAAAGTGTGGGCAATTTCATCATCGTAAATTCGATAG TAAATTCACTGTAGTGGTCTCGGTTGTCGGTGGTCTGCCGTTTCCAGATG CGAGCACACTAGCGCTAGAGGTAAATTTTCCCGCGAACGTCAAATCTTCA GTGCGTCTCGGTTTTTCATTCAAGGACACAAACCAACTGCCAGGATCTAA AAAAACAAAGAACCTACTGAAACGGATCATTCGCCATCGGTGAAATCTCA CCCTGCGGCATACGACGCCAGTATTACTTCGGTTACTGGGGATTAGGTTC ATGCTGGTAAGTAACCAGGATACGAATCAAACGAGTGAAGGATGAAGGAC CCATAGTATATAATATGTTGATGGTAACTCCTAGGATCTAGACGAGGCTG TGCTGGATCGAATGGATGACACGCTGCTATTCCCGATCCCAGACAAAAGG ACTCGCGCGAGGCTTCTAGTCCAGGTGAGGCGAAACAGTGCCGTGTATAT ATTTACCCTACTGTGGAACATCTTGTATATAATTCTCGGACACATGAAGA AGGACCACGCGCGACTTTCAACATGGTGATTCTTTATAACCTGAAGGTTT GCCATATACAATTACCAAGGATTACTGTACTCGGGTATGGGTGTATCATT TAACGTTTTCCCACTCAAGATATGAAACAACCGGCGGGGAATTGAACCCT GTACAACTTCAACACAACTTAGGTACAGGCGCAAAATCATCTGTAGGTAT TTATTATTAGGTCCTGTCGATAACTTAGATAATTCTGACAGAAACGTGGT ACATGCCATACAATTTTTGTTTTCGTCAGAAGCGTTTAATTTGCTGGTGT GGAAGCAGTACGATGATAAATATGCTGTTGAAAACAAGCGTCTGTCCGAT GAACAGCATTTTAGTACACTTATCGTGATCTGGCCCCTGGAGGATTTTAC ATGCCCAGGAGGTACTAATGACATAGATACAGAGTTCTAGTAAAGTACAC TACAATACAGTAAATTATCGGATGTTTCCGATCTTGCATGACTTCGCGTC GAAAGTGATGGACCTCTACCCTCTATTAATGGTAGTAGGGCCATGGATTG ATAACGACAATGGATAATATTTCGGTCACACTCCAGCACCGCCTGGACTC CTCCTCCCTATTCTGTCTCGATCCCAAACACTGTCAGTATTTCCACAAGT ACTGCTCGTCAGGGTTACGCGAGAGAGAAAATTCCAGCAGCAAGTCTCGT GGGAGTCGAGCGGGGCTTGGGCTTCCAGAGTGGCCGTGGTGGCCAAGGAT CGAGAGAAGAAGGGATATCATGCGGGTGGAGAAAGGGGTGGACGATAGAC TACTGGCCGGATTGGCGGCTGACTTGTGTGGCTTCAGTGGCAGAGAGGTG AAGGGCGAGAGCCAAGTACATACGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig7829:7260..9536+

>mRNA_H-paniculata_contig7829.15852.1 ID=mRNA_H-paniculata_contig7829.15852.1|Name=mRNA_H-paniculata_contig7829.15852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1182bp|location=Sequence derived from alignment at H-paniculata_contig7829:7260..9536+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTGCGCTATCATGAGCGGCGGCGACGTAGGTCCTCTGGGAAATGA
CGCTGTGACGGAGCTTCACCGCTTGTTTCGCTGGGCTGAAAAGTCTTCCA
GATGGACTGCGCTATCATGAGCGGCGGCGACGTAGGTCCTCTGGGAAATG
ACGCTGTGACGGAGCTTCACCGCTTGTTTCGCTGGGCTGAAAAGTCTTCC
AGAGGATTGCTACTGTTCATTGACGAGGCCGAGGCGTTTTTGGGCAAGCG
GTGCAGTCCAAACATGTCGGAGGACACTCGCAATGCTCTCAACGCTCTCT
TGTACAACACTGGTACTCCTAGTCACCGCTTGATGATGGTCTTGGCTACC
AATAGGGCAGAGAGGATTGCTACTGTTCATTGACGAGGCCGAGGCGTTTT
TGGGCAAGCGGTGCAGTCCAAACATGTCGGAGGACACTCGCAATGCTCTC
AACGCTCTCTTGTACAACACTGGTACTCCTAGTCACCGCTTGATGATGGT
CTTGGCTACCAATAGGGCAGAGGATCTAGACGAGGCTGTGCTGGATCGAA
TGGATGACACGCTGCTATTCCCGATCCCAGACAAAAGGACTCGCGCGAGG
CTTCTAGTCCAGGATCTAGACGAGGCTGTGCTGGATCGAATGGATGACAC
GCTGCTATTCCCGATCCCAGACAAAAGGACTCGCGCGAGGCTTCTAGTCC
AGTATTTCCACAAGTACTGCTCGTCAGGGTTACGCGAGAGAGAAAATTCC
AGCAGCAAGTCTCGTGGGAGTCGAGCGGGGCTTGGGCTTCCAGAGTGGCC
GTGGTGGCCAAGGATCGAGAGAAGAAGGGATATCATGCGGGTGGAGAAAG
GGGTGGACGATAGACTACTGGCCGGATTGGCGGCTGACTTGTGTGGCTTC
AGTGGCAGAGAGGTGAAGGGCGAGAGCCAAGTACATACGTAATATTTCCA
CAAGTACTGCTCGTCAGGGTTACGCGAGAGAGAAAATTCCAGCAGCAAGT
CTCGTGGGAGTCGAGCGGGGCTTGGGCTTCCAGAGTGGCCGTGGTGGCCA
AGGATCGAGAGAAGAAGGGATATCATGCGGGTGGAGAAAGGGGTGGACGA
TAGACTACTGGCCGGATTGGCGGCTGACTTGTGTGGCTTCAGTGGCAGAG
AGGTGAAGGGCGAGAGCCAAGTACATACGTAA
back to top