prot_H-paniculata_contig7807.15831.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig7807.15831.1
Unique Name	prot_H-paniculata_contig7807.15831.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	144

Homology

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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.920e-66
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSKK     KKAGDKK+T+KR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116

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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 189 bits (481), Expect = 9.920e-60
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = 0

Query:    4 LTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            L HL  +P+ P  +          MAKTPSKK     KKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 LEHLVTAPSPPQST----------MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130

[Close]

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.770e-59
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGD-KKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAK PSKK     KKA D KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117

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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.170e-58
Identity = 107/144 (74.31%), Postives = 116/144 (80.56%), Query Frame = 0

Query:    1 LRSLTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKXXXXXKKAGD-KKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            LR+   L+F+      S   +H P   MAK PSKK     KKA D KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  113 LRATAALSFA------SHCTKHSPTFTMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250

[Close]

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.300e-57
Identity = 96/118 (81.36%), Postives = 106/118 (89.83%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGDKKKTSK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSKK     KK G+K K  K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118

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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 182 bits (461), Expect = 6.400e-57
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSKK     KKAG K+  +KR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114

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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 179 bits (454), Expect = 7.940e-56
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSK+     KKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116

[Close]

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 9.020e-56
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKK---AGDKKKTSK-RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSK+      K    GDKKK SK R+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120

[Close]

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.820e-55
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKA---GDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSKK      K    G KK++ KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153

[Close]

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.660e-55
Identity = 93/116 (80.17%), Postives = 103/116 (88.79%), Query Frame = 0

Query:   28 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 143
            MAKTPSKK     K  G  K++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAAAPKKAGG--KRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FWI8_ECTSI	4.920e-66	93.10	Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7...	[more]
A0A6U0X3U9_9STRA	9.920e-60	72.86	Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R...	[more]
A0A836CJ22_9STRA	3.770e-59	85.47	Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A836CJT3_9STRA	2.170e-58	74.31	Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R...	[more]
A0A485K2U0_9STRA	1.300e-57	81.36	Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep...	[more]
H2B_OLILU	6.400e-57	81.03	Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830...	[more]
B7FWR8_PHATC	7.940e-56	80.17	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
B8BX20_THAPS	9.020e-56	80.00	Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re...	[more]
A0A7S2P1D6_9STRA	1.820e-55	78.99	Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675...	[more]
A0A6U6DWX5_9STRA	2.660e-55	80.17	Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000558	Histone H2B	PRINTS	PR00621	HISTONEH2B	coord: 127..140 score: 92.65 coord: 75..95 score: 67.66 coord: 97..114 score: 56.83 coord: 114..127 score: 90.61 coord: 56..74 score: 84.56
IPR000558	Histone H2B	SMART	SM00427	h2b3	coord: 46..142 e-value: 5.2E-69 score: 245.3
IPR000558	Histone H2B	PANTHER	PTHR23428	HISTONE H2B	coord: 27..143
IPR000558	Histone H2B	PROSITE	PS00357	HISTONE_H2B	coord: 111..133
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 23..119 e-value: 2.1E-19 score: 70.2
IPR009072	Histone-fold	GENE3D	1.10.20.10		coord: 16..143 e-value: 3.8E-57 score: 193.7
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 29..143
None	No IPR available	PANTHER	PTHR23428:SF196	HISTONE H2B TYPE 1-N	coord: 27..143

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig7807	contig	H-paniculata_contig7807:4875..5306 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig7807.15831.1	mRNA_H-paniculata_contig7807.15831.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig7807 4875..5306 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig7807.15831.1 ID=prot_H-paniculata_contig7807.15831.1|Name=mRNA_H-paniculata_contig7807.15831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
LRSLTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKSAKAPKKAGDKKKTS
KRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLT
RYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000558	Histone_H2B
IPR007125	Histone_H2A/H2B/H3
IPR009072	Histone-fold