mRNA_H-paniculata_contig7807.15831.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7807.15831.1
Unique NamemRNA_H-paniculata_contig7807.15831.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: D7FWI8_ECTSI (Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7FWI8_ECTSI)

HSP 1 Score: 205 bits (521), Expect = 4.920e-66
Identity = 108/116 (93.10%), Postives = 110/116 (94.83%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSKK     KKAGDKK+T+KR ESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKAGDKKRTNKRTESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 116
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A6U0X3U9_9STRA (Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 RepID=A0A6U0X3U9_9STRA)

HSP 1 Score: 189 bits (481), Expect = 9.920e-60
Identity = 102/140 (72.86%), Postives = 114/140 (81.43%), Query Frame = 1 
Query:   10 LTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            L HL  +P+ P  +          MAKTPSKK     KKAGDK K  KR ESYSSYIYKVLKQVHP+TGISK+GMSIMNSFIND+FER+AGE+G+L RY+KKATLSSRE+QT+VRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 LEHLVTAPSPPQST----------MAKTPSKKSAKAPKKAGDKVKKGKRTESYSSYIYKVLKQVHPETGISKKGMSIMNSFINDIFERLAGEAGRLARYSKKATLSSREIQTSVRLMLPGELAKHAVSEGTKAVTKFTSS 130
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A836CJ22_9STRA (Histone H2B n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ22_9STRA)

HSP 1 Score: 187 bits (476), Expect = 3.770e-59
Identity = 100/117 (85.47%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGD-KKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAK PSKK     KKA D KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 117
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A836CJT3_9STRA (Histone H2B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJT3_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.170e-58
Identity = 107/144 (74.31%), Postives = 116/144 (80.56%), Query Frame = 1 
Query:    1 LRSLTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKXXXXXKKAGD-KKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            LR+   L+F+      S   +H P   MAK PSKK     KKA D KKK +KR ESY SYIYKVLKQVHPDTGISKRGMSIMNSFINDVFER+A E+GKLTRYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:  113 LRATAALSFA------SHCTKHSPTFTMAKIPSKKAAKAPKKAADGKKKKAKRTESYGSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERIASEAGKLTRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 250
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A485K2U0_9STRA (Histone H2B n=29 Tax=Stramenopiles TaxID=33634 RepID=A0A485K2U0_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.300e-57
Identity = 96/118 (81.36%), Postives = 106/118 (89.83%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGDKKKTSK--RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSKK     KK G+K K  K  R+ESYS+YIYKVLKQVHP+TGISKRGMSIMNSFIND+FER+A E+GKL+RYNKK+TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTSS
Sbjct:    1 MAKTPSKKSAKAPKKTGEKGKNRKVKRIESYSTYIYKVLKQVHPETGISKRGMSIMNSFINDIFERIASEAGKLSRYNKKSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 118
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: H2B_OLILU (Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=83000 RepID=H2B_OLILU)

HSP 1 Score: 182 bits (461), Expect = 6.400e-57
Identity = 94/116 (81.03%), Postives = 106/116 (91.38%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSKK     KKAG K+  +KR+E+YSSYIYKVLKQVHPDTGISKRGMSIMNSFIND+FER+AGE+ +L RYNK++TLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKFTS+
Sbjct:    1 MAKTPSKKAAKAPKKAGSKR--NKRVETYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDIFERLAGEASRLARYNKRSTLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFTSN 114
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: B7FWR8_PHATC (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B7FWR8_PHATC)

HSP 1 Score: 179 bits (454), Expect = 7.940e-56
Identity = 93/116 (80.17%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSK+     KKA    K+ KR E+YSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+SS
Sbjct:    1 MAKTPSKQSAKAPKKAATGTKSKKRTETYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIATEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSS 116
[Close]
BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: B8BX20_THAPS (Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 RepID=B8BX20_THAPS)

HSP 1 Score: 179 bits (454), Expect = 9.020e-56
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKK---AGDKKKTSK-RLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSK+      K    GDKKK SK R+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    1 MAKTPSKQAPAKAAKKAATGDKKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 120
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BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A7S2P1D6_9STRA (Histone H2B n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2P1D6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.820e-55
Identity = 94/119 (78.99%), Postives = 105/119 (88.24%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKA---GDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSKK      K    G KK++ KR+ESYS+YIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+AGE+GKL  YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:   35 MAKTPSKKAPSKAAKKPTDGAKKRSKKRVESYSTYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIAGEAGKLATYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 153
[Close]
BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Match: A0A6U6DWX5_9STRA (Histone H2B n=4 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6DWX5_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.660e-55
Identity = 93/116 (80.17%), Postives = 103/116 (88.79%), Query Frame = 1 
Query:   82 MAKTPSKKXXXXXKKAGDKKKTSKRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLTRYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS 429
            MAKTPSKK     K  G  K++ KR ESYSSYIYKVLKQVHPDTGISK+GMSIMNSFIND+FER+A E+GKL+ YNKKATLSSRE+QTAVRLMLPGELAKHAVSEGTKAVTKF+S+
Sbjct:    8 MAKTPSKKAAAPKKAGG--KRSRKRTESYSSYIYKVLKQVHPDTGISKKGMSIMNSFINDIFERIASEAGKLSTYNKKATLSSREIQTAVRLMLPGELAKHAVSEGTKAVTKFSSA 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7807.15831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWI8_ECTSI4.920e-6693.10Histone H2B n=5 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A6U0X3U9_9STRA9.920e-6072.86Histone H2B n=2 Tax=Dictyochophyceae TaxID=39119 R... [more]
A0A836CJ22_9STRA3.770e-5985.47Histone H2B n=2 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CJT3_9STRA2.170e-5874.31Histone H2B n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A485K2U0_9STRA1.300e-5781.36Histone H2B n=29 Tax=Stramenopiles TaxID=33634 Rep... [more]
H2B_OLILU6.400e-5781.03Histone H2B n=1 Tax=Olisthodiscus luteus TaxID=830... [more]
B7FWR8_PHATC7.940e-5680.17Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
B8BX20_THAPS9.020e-5680.00Histone H2B n=13 Tax=Bacillariophyta TaxID=2836 Re... [more]
A0A7S2P1D6_9STRA1.820e-5578.99Histone H2B n=2 Tax=Skeletonema marinoi TaxID=2675... [more]
A0A6U6DWX5_9STRA2.660e-5580.17Histone H2B n=4 Tax=Odontella aurita TaxID=265563 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7807contigH-paniculata_contig7807:4875..5306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue8.6e-51
Seed eggNOG ortholog2880.D7FWI8
KEGG koko:K11252
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006325,GO:0006333,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0070013,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsKOG1744@1,KOG1744@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930970.5213852-CDS-H-paniculata_contig7807:4874..53061622930970.5213852-CDS-H-paniculata_contig7807:4874..5306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7807 4875..5306 +
1691481532.7348754-CDS-H-paniculata_contig7807:4874..53061691481532.7348754-CDS-H-paniculata_contig7807:4874..5306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7807 4875..5306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7807.15831.1prot_H-paniculata_contig7807.15831.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7807 4875..5306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7807.15831.1

>prot_H-paniculata_contig7807.15831.1 ID=prot_H-paniculata_contig7807.15831.1|Name=mRNA_H-paniculata_contig7807.15831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
LRSLTHLAFSPAQPPYSPSPEHQPPRKMAKTPSKKSAKAPKKAGDKKKTS
KRLESYSSYIYKVLKQVHPDTGISKRGMSIMNSFINDVFERVAGESGKLT
RYNKKATLSSREVQTAVRLMLPGELAKHAVSEGTKAVTKFTSS*
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mRNA from alignment at H-paniculata_contig7807:4875..5306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7807.15831.1 ID=mRNA_H-paniculata_contig7807.15831.1|Name=mRNA_H-paniculata_contig7807.15831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at H-paniculata_contig7807:4875..5306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCGTTCGCTCACACACCTTGCATTTTCACCCGCGCAACCACCCTACAG
TCCGTCTCCCGAACACCAACCACCTAGGAAGATGGCTAAGACACCCTCGA
AGAAGTCCGCTAAGGCCCCCAAGAAGGCGGGAGACAAAAAGAAGACCAGT
AAGAGGTTGGAGTCATACTCGTCGTACATCTACAAGGTGTTGAAGCAGGT
GCACCCCGATACCGGTATCTCCAAGCGCGGAATGTCCATCATGAACTCGT
TCATCAACGACGTGTTTGAGCGCGTGGCTGGCGAGTCGGGAAAGCTAACC
CGCTACAACAAAAAAGCGACTCTCTCTTCTCGCGAGGTGCAGACGGCGGT
GCGTCTGATGCTTCCTGGCGAGCTGGCCAAACACGCTGTGTCTGAGGGTA
CCAAGGCCGTTACCAAGTTCACTTCATCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig7807:4875..5306+

>mRNA_H-paniculata_contig7807.15831.1 ID=mRNA_H-paniculata_contig7807.15831.1|Name=mRNA_H-paniculata_contig7807.15831.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig7807:4875..5306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCCGTTCGCTCACACACCTTGCATTTTCACCCGCGCAACCACCCTACAG
TCCGTCTCCCGAACACCAACCACCTAGGAAGATGGCTAAGACACCCTCGA
AGAAGTCCGCTAAGGCCCCCAAGAAGGCGGGAGACAAAAAGAAGACCAGT
AAGAGGTTGGAGTCATACTCGTCGTACATCTACAAGGTGTTGAAGCAGGT
GCACCCCGATACCGGTATCTCCAAGCGCGGAATGTCCATCATGAACTCGT
TCATCAACGACGTGTTTGAGCGCGTGGCTGGCGAGTCGGGAAAGCTAACC
CGCTACAACAAAAAAGCGACTCTCTCTTCTCGCGAGGTGCAGACGGCGGT
GCGTCTGATGCTTCCTGGCGAGCTGGCCAAACACGCTGTGTCTGAGGGTA
CCAAGGCCGTTACCAAGTTCACTTCATCATAGCTCCGTTCGCTCACACAC
CTTGCATTTTCACCCGCGCAACCACCCTACAGTCCGTCTCCCGAACACCA
ACCACCTAGGAAGATGGCTAAGACACCCTCGAAGAAGTCCGCTAAGGCCC
CCAAGAAGGCGGGAGACAAAAAGAAGACCAGTAAGAGGTTGGAGTCATAC
TCGTCGTACATCTACAAGGTGTTGAAGCAGGTGCACCCCGATACCGGTAT
CTCCAAGCGCGGAATGTCCATCATGAACTCGTTCATCAACGACGTGTTTG
AGCGCGTGGCTGGCGAGTCGGGAAAGCTAACCCGCTACAACAAAAAAGCG
ACTCTCTCTTCTCGCGAGGTGCAGACGGCGGTGCGTCTGATGCTTCCTGG
CGAGCTGGCCAAACACGCTGTGTCTGAGGGTACCAAGGCCGTTACCAAGT
TCACTTCATCATAG
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