mRNA_H-paniculata_contig7760.15796.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: D7FRX7_ECTSI (Carbohydrate binding family 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRX7_ECTSI) HSP 1 Score: 409 bits (1050), Expect = 8.240e-135 Identity = 211/376 (56.12%), Postives = 252/376 (67.02%), Query Frame = 1
Query: 1 LALDLEDPSECSSLQVKDEHLIWSNRNLPETGGYREWAWTENTLVILEEGPHVITLCFIGKGLVNVDEILFQDSMCGDGLCSREQDNPETCSVCPXXXXXXXXPFGTLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEK-GLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSR-ESSVDIEAAADGSFYVGYGVPG 1122
L LDLEDPSEC L DE +I N NLPET Y +W WT+N V L GPHV+TLCFIG +VNVD + F +S C +G+C + D+ ETC CP + L VPGD++AEDFD GGEGVG+HE ECV SET NCT L S+YRNES K GLV LR+ DGTVSWGWTS EWL YT+ VS TS+YNV LRYA+ + +A +F+D +C+ +G +MP SGGE GPFSRT PF T+L AG HS+RVCV GGFTLDKI+F + GVCN DG CDV EGC SC DDC CS+G YG V +IP F+ A +FDEG NG AY+D + NLG+ G R + SVDIEA DGS +V YG PG
Sbjct: 289 LCLDLEDPSECPKLGEGDEQVIMLNSNLPETRSYSDWNWTKNASVALTPGPHVVTLCFIGNAVVNVDLLRFGESDCSNGVC-QWVDSEETCITCPQDCGECPTAYVPLRVPGDLEAEDFDIGGEGVGFHENECVSSETKNCTQVQGML-SEYRNESSKEGLVELRDADGTVSWGWTSIGEWLTYTVTVSVTSDYNVTLRYASASTGQAVIFLDTYTCDVKEGKGTFLGSLLMPDSGGEAGPFSRTAPFTTRLQAGQHSIRVCVATGGFTLDKISFD--LQTSGVCNDDGKCDVGDDEGCMSCEDDCVCSEGQWYGFVKTSIPGFVEAYKFDEGGNGVAYYDDTKGNLGLVGLRTDESVDIEAGWDGSLHVAYGTPG 660
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: A0A1Y0FYV6_9GAMM (Uncharacterized protein n=1 Tax=Cellvibrio sp. PSBB006 TaxID=1987723 RepID=A0A1Y0FYV6_9GAMM) HSP 1 Score: 87.8 bits (216), Expect = 4.650e-15 Identity = 74/269 (27.51%), Postives = 106/269 (39.41%), Query Frame = 1
Query: 310 PFGTLV--VPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSRESSVDIEAAADGSFYVGY 1110
P+G + +PG IQAEDFD GG+ V Y + + +L YR + G GW EWL YT+ V+++ NY + LR A+ + + R+ VD G +P++G + + P LTAG H L++ G F +D + F+ DG +P+GG IP I FD G G AY D+ N G G VD E A+ G VG+
Sbjct: 728 PYGGVARAIPGTIQAEDFDEGGQAVSYSDSDAE------------NLGGAYRPNEAVDIAA--NASGGHHVGWLGGSEWLEYTVEVANSGNYELELRVASESGSSLRIMVDGIDAT---------GQVPVPATGAWQSYTTISTPIT--LTAGQHILQLRAG-GAFNIDFMRFSNTGGDGQ----------------------------TPFGGTPWAIPGTIEMENFDNGGEGVAYHDADAANNGNAGRTNEGVDTENASGGGLNVGW 942
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: UPI00117DBE3E (carbohydrate-binding protein n=1 Tax=Catenovulum sediminis TaxID=1740262 RepID=UPI00117DBE3E) HSP 1 Score: 86.7 bits (213), Expect = 8.420e-15 Identity = 82/275 (29.82%), Postives = 120/275 (43.64%), Query Frame = 1
Query: 310 PFGT--LVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGS--RESSVDIEAAADGSFYVGYGVPG 1122
P+GT + +PG I+AE FD GG+G+ YH++ A +T ++RNE + G + GW EWL YT+ V + NY + + A+G + F + N T SE P +G ++ + + L AG+H +RV GGF +D I+F A+T+ G G+PY G +P I A +D G G AY D N G TG R VDIE A+ G + +G+ PG
Sbjct: 33 PYGTNPIAIPGTIEAELFDLGGQGIAYHDLG----------AGNTG--GQFRNEDVDIEIAST---GGYNIGWFEPGEWLEYTVNVETAGNYAIHAKVASGMNGGSLRFEVYGATN--TNSE----TISFPGTGSWQN-WTSSPSTSLSLNAGTHIVRVVQNSGGFNVDSISF--ALTNSG---------------------------GTPYHGAPAQVPGVIEAEFYDIGGAGIAYNDL---NAGNTGGQLRNEDVDIELASTGGYNIGWFEPG 253
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: A0A2I8VKY3_9EURY (Uncharacterized protein n=1 Tax=Salinigranum rubrum TaxID=755307 RepID=A0A2I8VKY3_9EURY) HSP 1 Score: 82.4 bits (202), Expect = 1.600e-13 Identity = 75/261 (28.74%), Postives = 109/261 (41.76%), Query Frame = 1
Query: 340 IQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREV--DGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAA-GNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPEN-LGITGSRESSVDIEAAADGSFYVGY 1110
I+AE +D GGEGV YH+ D++ YR+ G V + D + GW EWL YTI + + S Y+ R A+ G K R+ +D E+GV +P +GG + T+P T G H LRV + GF L+ + F V + V G+ +PYGG A IP I A FDEG A+ D+ N LG + +++ A G + +G+
Sbjct: 142 IEAEQYDEGGEGVAYHDTT------------DSNQGGAYRD----GGVDIERTADDNGYNVGWIKDGEWLEYTITLPAGS-YDFEARVASWGTDRKLRVLLDGS----------ELGVVDVPETGGSQNWQTVTLPNLEVSTDGEHVLRVEAVGSGFNLNWVRFVTRVPE-----------VEPGQ--------------TPYGGAARAIPGRIQAEDFDEGGQDVAFSDTDDVNRLGEYRAAGPDIELSGEASGDYSIGW 350
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: A0A7M2X2X7_9BACT (Carbohydrate-binding protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2X2X7_9BACT) HSP 1 Score: 82.8 bits (203), Expect = 2.070e-13 Identity = 82/268 (30.60%), Postives = 119/268 (44.40%), Query Frame = 1
Query: 310 PFG--TLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYA-AGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVC--VLIGGF--TLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGS-RESSVDIEAAAD 1089
PFG VPG I+AE+FD+GGEGV +H+ + T++ YR+ + + G + G S EWL YT+ +++ Y++ +R+A AG A L VD + G V+P++GG + P T L+AG H LR GG L+ ++ T+A T V G +P+GG +P I FDEG G +Y DS P N+G GS R + VDIE + D
Sbjct: 336 PFGGTAWAVPGTIEAENFDDGGEGVAFHDTD------------PTNVSGSYRSTGVD-VESASDTGGGFNIGHISAGEWLEYTVNIAAAGQYDLGVRFATAGGGGTAHLEVDGLAAG---------GAIVLPNTGGWQTWQTVAGPRLT-LSAGQHVLRFAFDASAGGDIGNLNWLSLTDAPT------------VPXXXXXXXIGQ-------TPFGGTPWALPGTIQFENFDEGGAGISYQDSDPTNVG--GSYRSTGVDIEPSGD 559
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: UPI001B810FB2 (carbohydrate-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B810FB2) HSP 1 Score: 82.4 bits (202), Expect = 2.700e-13 Identity = 92/341 (26.98%), Postives = 136/341 (39.88%), Query Frame = 1
Query: 73 NRNLPETGGYREWAWTENTLVILEEGPHVITLCFIGKGLVNVDEILFQDSMCGDGLCSREQDNPETCSVCPXXXXXXXXPFG--TLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSRESSVDIEAAAD 1089
N N+P TGG++ W T + V L G +T+ G N++ + F S P+G VPG +QAE++D GG+G Y N T+ + S S YR++ L + G GWT+ +W YT+ V++ Y V +R AA + L + S + G P++GG TV L AG+ +L T+D+ DG N + + AAG T S+G PYGG A +P + A +D G G AY +S N R VD+EA++D
Sbjct: 159 NINVPATGGWQTWT-TVSATVTLPAGTQTLTIDQDAAGW-NLNYLTFTSS---------------------------EGPYGGTAAAVPGTVQAENYDTGGQGTAY-----------NVTSTNGSANS-YRSDGVD-LEATSDTGGGDDLGWTTAGQWFNYTVNVATAGTYTVGVRIAAPSAVADALHIANSSGTNLS------GAIAAPATGGY--QTWATVNATVTLPAGTQTL---------TVDQ--------DGAGWNLNYLTLAAAGG---------TPSEG-PYGGTAAAVPGTVLAENYDTGGQGVAYSVTST-NGSANSYRSDGVDLEASSD 421
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: A0A7J4IJJ8_9EURY (Probable pectate lyase C n=1 Tax=Methanoregulaceae archaeon TaxID=2485498 RepID=A0A7J4IJJ8_9EURY) HSP 1 Score: 82.0 bits (201), Expect = 3.390e-13 Identity = 72/244 (29.51%), Postives = 96/244 (39.34%), Query Frame = 1
Query: 310 PFGTLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLG 1041
P+ TLVVPG I+AED+DNGGEGV YH+ + YRN+ V + + G + + EW YT V +Y V LR AA N + + + EIG +P +G + T +L AG+ +LR G LD+I T VT V +PY A +P I A FD G G +Y D P NLG
Sbjct: 488 PYRTLVVPGTIEAEDYDNGGEGVAYHDTVAG------------NQGGAYRNDD----VDIEAITGGYTLAYIRDTEWTQYTATVQQAGDYQVTLRAAAWNGPRTVRILAGTT---------EIGTVTVPLTGSSTAFTTATT--TVRLAAGAQALRFAYTGDGMNLDRIE-TALVTPTXXXXXXXXXXVV---------------PEAPYP-AAHVLPARIEAEHFDVGGEGVSYHDFEPANLG 687
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: UPI00189242BB (carbohydrate-binding protein n=1 Tax=Catenulispora rubra TaxID=280293 RepID=UPI00189242BB) HSP 1 Score: 81.6 bits (200), Expect = 4.530e-13 Identity = 76/275 (27.64%), Postives = 109/275 (39.64%), Query Frame = 1
Query: 310 PFG--TLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSRESSVDIEAAAD--GSFYVGYGVPG 1122
PFG VPG +QAE++D GG+GV Y+ A + YR + L + G GWT+ +W YT+ +S Y V+LR A+ N L + A++ G +P++GG TV + L AG +L V GG+ L+ +F A+GEG PYGG +P + A +D G G AY + N R VD+EA D G + VG+ G
Sbjct: 55 PFGGTAAAVPGTVQAENYDTGGQGVAYN------------IASTNGSANSYRTDGVD-LEATTDTGGGYDVGWTAAGQWFDYTVKAASAGTYTVSLRLASPNGVTGGLHI-ANAAGTNLS-----GAVNVPATGG--WQTWTTVTTSVTLPAGQQTLTVYQDNGGWNLNSFSFAG---------------TASGEG--------------PYGGTPAALPGTLQAENYDTGGQGVAY-SVAGTNGSANSYRTDGVDLEATTDTGGGYDVGWTASG 278
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: UPI001B827E6A (carbohydrate-binding protein n=1 Tax=Actinospica durhamensis TaxID=1508375 RepID=UPI001B827E6A) HSP 1 Score: 80.9 bits (198), Expect = 6.830e-13 Identity = 83/275 (30.18%), Postives = 117/275 (42.55%), Query Frame = 1
Query: 310 PFG--TLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAAGNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSRESSVDIEAAAD--GSFYVGYGVPG 1122
P+G VPG +QAE++D GG+GV Y+ S TN + YR++ L + G GWTS +W YT+ V+S Y V LR AA + L + A+S T I V P++G TV L AG+ +L + G+ L+ ++FT + GG +GEG PYGG A +P + A +D G G AY +S T R VD+EA D G + VG+ G
Sbjct: 49 PYGGTAAAVPGTVQAENYDTGGQGVAYNV-----SSTNGTA-------NSYRSDGVD-LEATTDSGGGDDLGWTSAGQWFKYTVNVASAGKYTVGLRVAAISAVTDGLHI-ANSAG--TNLSGNINV---PATGA--WQTWTTVTATVTLPAGTQTLTIDQDTAGWNLNYLSFTSS---GGT----------SGEG--------------PYGGTAAAVPGTVQAENYDTGGQGTAYNVTSTNGSANT-YRSDGVDLEATTDSGGGYDVGWTAAG 274
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Match: UPI00131EBE81 (carbohydrate-binding protein n=1 Tax=Granulicella sp. L46 TaxID=1641865 RepID=UPI00131EBE81) HSP 1 Score: 80.5 bits (197), Expect = 1.090e-12 Identity = 82/275 (29.82%), Postives = 115/275 (41.82%), Query Frame = 1
Query: 310 PFGTLVVPGDIQAEDFDNGGEGVGYHEIECVPSETNNCTAKDTSLYSKYRNESEKGLVGLREVDGTVSWGWTSHKEWLGYTIVVSSTSNYNVALRYAA-GNVAKARLFVDADSCNPYTQSEHEIGVAVMPSSGGEIGPFSRTVPFATQLTAGSHSLRVCVLIGGFTLDKIAFTEAVTDGGVCNKDGMCDVAAGEGCRSCGDDCTCSKGSPYGGVAPTIPRFIWAVRFDEGNNGEAYWDSSPENLGITGSRES-SVDIEAAAD--GSFYVGYGVPG 1122
P G +PG IQAE+FDNGG VGY ++ D YR + G+ G + G G+T E+L YT+ VS+ YN+ R A+ G + D E++ G +P + G ++ V A QL+AG H ++V TLD T GG+ N + A + S + G IP I FD G G AYW+ + N G R +VDIE ++D G + VG G PG
Sbjct: 614 PAGPAAIPGIIQAENFDNGGNYVGYFNLDST----------DQGSAPTYRPGTTVGIEGTGDAGGGYDVGYTKEGEYLRYTVNVSTPGIYNLQTRVASLGQGGYYHVSFD---------DENKTGTLFVPVTNG-FQTYTTQVSPAFQLSAGRHVMQV-------TLDGNGPT-----GGMGNFNWFGLQAP-------------TPSSSFTGGPQAIPGQIEIENFDTGGKGVAYWNGAMANGGGANYRPGETVDIENSSDTGGGYDVGNGQPG 843 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7760.15796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7760.15796.1 >prot_H-paniculata_contig7760.15796.1 ID=prot_H-paniculata_contig7760.15796.1|Name=mRNA_H-paniculata_contig7760.15796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp LALDLEDPSECSSLQVKDEHLIWSNRNLPETGGYREWAWTENTLVILEEGback to top mRNA from alignment at H-paniculata_contig7760:426..9183- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7760.15796.1 ID=mRNA_H-paniculata_contig7760.15796.1|Name=mRNA_H-paniculata_contig7760.15796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8758bp|location=Sequence derived from alignment at H-paniculata_contig7760:426..9183- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7760:426..9183- >mRNA_H-paniculata_contig7760.15796.1 ID=mRNA_H-paniculata_contig7760.15796.1|Name=mRNA_H-paniculata_contig7760.15796.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig7760:426..9183- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |