mRNA_H-paniculata_contig7662.15660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7662.15660.1
Unique NamemRNA_H-paniculata_contig7662.15660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 2.170e-11
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRTIEQRTTSCHRR 227
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT  +R  S HRR
Sbjct:  900 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHRREISFHRR 974
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BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.250e-9
Identity = 36/78 (46.15%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  211 PAATGGDEQGRRRMDDAQVLCKLDLSQRYWQMPLDEEGQELFTMVTDQGLFTPKRVTQRLLNVTS*FQGTIDDGLEGL 444
            P      E    ++  A+    LDL Q YWQ PL  E QE+FT+ T  GL+TPKRV Q +LN TS FQ T+   L+GL
Sbjct:  827 PGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGL 904
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BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JYL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.610e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct:   90 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 153
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JYA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYA2_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 2.830e-9
Identity = 29/61 (47.54%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:   12 VTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  I++ E+N GA    +NP SS+R+
Sbjct:   14 VSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARS 74
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5KXX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 3.660e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S VT+S+TEAEY+A  EG K+ L+V+  L F+ PE  G  I++ E+N GA    +NP SSSRT
Sbjct:  130 QSIVTLSSTEAEYIAAGEGVKEALFVRAALSFVAPETSGSNIQVLEDNQGAIAVVQNPLSSSRT 193
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JU90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU90_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.050e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct:  737 QSMVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 800
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.390e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct: 1128 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 1191
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JEW4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.460e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct: 1262 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 1325
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.570e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct: 1507 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 1570
[Close]
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.590e-9
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:    3 RSTVTVSTTEAEYLALEEGTKQGLYVKGVLEFLQPELYGIGIKLFENNAGARCFAENPRSSSRT 194
            +S V++S+TEAEY+A  EG K+ L+V+ VL F+ PE  G  IK+ E+N GA    +NP SS RT
Sbjct: 1527 QSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRT 1590
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7662.15660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTV6_9PHAE2.170e-1149.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K5A5_9PHAE1.250e-946.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYL4_9PHAE1.610e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYA2_9PHAE2.830e-947.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX2_9PHAE3.660e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU90_9PHAE7.050e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE7.390e-950.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JEW4_9PHAE7.460e-950.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JZQ8_9PHAE7.570e-950.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE7.590e-950.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7662contigH-paniculata_contig7662:384..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size552
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7662.15660.1prot_H-paniculata_contig7662.15660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7662 498..807 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.2292726-UTR-H-paniculata_contig7662:383..4971622930947.2292726-UTR-H-paniculata_contig7662:383..497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 384..497 +
1691481523.0270376-UTR-H-paniculata_contig7662:383..4971691481523.0270376-UTR-H-paniculata_contig7662:383..497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 384..497 +
1622930947.306231-UTR-H-paniculata_contig7662:807..9511622930947.306231-UTR-H-paniculata_contig7662:807..951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 808..951 +
1691481523.0694797-UTR-H-paniculata_contig7662:807..9511691481523.0694797-UTR-H-paniculata_contig7662:807..951Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7662 808..951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.2706895-CDS-H-paniculata_contig7662:497..6141622930947.2706895-CDS-H-paniculata_contig7662:497..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 498..614 +
1691481523.0413768-CDS-H-paniculata_contig7662:497..6141691481523.0413768-CDS-H-paniculata_contig7662:497..614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 498..614 +
1622930947.286958-CDS-H-paniculata_contig7662:630..8071622930947.286958-CDS-H-paniculata_contig7662:630..807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 631..807 +
1691481523.05383-CDS-H-paniculata_contig7662:630..8071691481523.05383-CDS-H-paniculata_contig7662:630..807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7662 631..807 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7662.15660.1

>prot_H-paniculata_contig7662.15660.1 ID=prot_H-paniculata_contig7662.15660.1|Name=mRNA_H-paniculata_contig7662.15660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
MVLVSSCSRTMLGHDVSLKTRGALVGLSSSEQPAATGGDEQGRRRMDDAQ
VLCKLDLSQRYWQMPLDEEGQELFTMVTDQGLFTPKRVTQRLLNVTS*
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mRNA from alignment at H-paniculata_contig7662:384..951+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7662.15660.1 ID=mRNA_H-paniculata_contig7662.15660.1|Name=mRNA_H-paniculata_contig7662.15660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=568bp|location=Sequence derived from alignment at H-paniculata_contig7662:384..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGCAGCACTGTCACTGTTTCTACTACCGAAGCAGAATACTTGGCTCTT
GAGGAGGGAACTAAGCAGGGCTTGTATGTGAAGGGTGTGCTTGAATTCTT
GCAACCGGAATTGTATGGTATTGGTATCAAGTTGTTCGAGAACAATGCTG
GGGCACGATGTTTCGCTGAAAACCCGCGGAGCTCTAGTCGGACTATCGAG
CAGCGAACAACCAGCTGCCACCGGCGGCGATGCACATGCCGAATTAGGAA
CAGGGCCGGCGACGCATGGATGACGCTCAAGTCTTGTGCAAGCTGGACCT
GTCGCAACGGTACTGGCAGATGCCGCTGGATGAGGAGGGGCAGGAGCTGT
TCACAATGGTCACGGATCAAGGATTATTTACGCCGAAGCGAGTCACACAG
AGGTTGTTGAACGTGACGAGCTAATTCCAGGGCACGATCGATGACGGTTT
GGAGGGTCTGCTTGGGGAGATATCTGCGAAGGTTCTGTGGACGAAATAGC
AGTATGGGCTGCGACGTGGCAAGAGTTGATGGAGTGCCTGCGGATGGTTC
TGGACAGGTTGATGGCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig7662:384..951+

>mRNA_H-paniculata_contig7662.15660.1 ID=mRNA_H-paniculata_contig7662.15660.1|Name=mRNA_H-paniculata_contig7662.15660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig7662:384..951+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTATTGGTATCAAGTTGTTCGAGAACAATGCTGGGGCACGATGTTTC
GCTGAAAACCCGCGGAGCTCTAGTCGGACTATCGAGCAGCGAACAACCAG
CTGCCACCGGCGGCGATATGGTATTGGTATCAAGTTGTTCGAGAACAATG
CTGGGGCACGATGTTTCGCTGAAAACCCGCGGAGCTCTAGTCGGACTATC
GAGCAGCGAACAACCAGCTGCCACCGGCGGCGATGAACAGGGCCGGCGAC
GCATGGATGACGCTCAAGTCTTGTGCAAGCTGGACCTGTCGCAACGGTAC
TGGCAGATGCCGCTGGATGAGGAGGGGCAGGAGCTGTTCACAATGGTCAC
GGATCAAGGATTATTTACGCCGAAGCGAGTCACACAGAGGTTGTTGAACG
TGACGAGCTAAGAACAGGGCCGGCGACGCATGGATGACGCTCAAGTCTTG
TGCAAGCTGGACCTGTCGCAACGGTACTGGCAGATGCCGCTGGATGAGGA
GGGGCAGGAGCTGTTCACAATGGTCACGGATCAAGGATTATTTACGCCGA
AGCGAGTCACACAGAGGTTGTTGAACGTGACGAGCTAA
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