prot_H-paniculata_contig76057.15597.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig76057.15597.1
Unique Nameprot_H-paniculata_contig76057.15597.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length62
Homology
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 65.1 bits (157), Expect = 8.680e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M  EI  +E NKTW  L D P   +PIG KWVF+ K NEHG + K KARLV +G +Q+ G
Sbjct:  852 MNAEIQAIEKNKTWE-LTDAPTGITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYG 910          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A445IMH9_GLYSO (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IMH9_GLYSO)

HSP 1 Score: 62.4 bits (150), Expect = 7.640e-10
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M  E+  +E NKTW  L ++PD   PIG KW+F+ K NEHG + K KAR+V +G  Q+ G
Sbjct:    1 MNAEMKAIEKNKTWE-LVNIPDGVKPIGVKWIFKTKFNEHGQIEKYKARIVVKGYAQQYG 59          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9GGE6_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGE6_FAGSY)

HSP 1 Score: 62.4 bits (150), Expect = 7.720e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M+VEID LEAN TW+ L   P  + PIG KWV++ K N  G V + KARLV +G NQ+ G
Sbjct:  500 MRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 558          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9I6J0_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6J0_FAGSY)

HSP 1 Score: 62.4 bits (150), Expect = 7.720e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M+VEID LEAN TW+ L   P  + PIG KWV++ K N  G V + KARLV +G NQ+ G
Sbjct:  550 MRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 608          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A3L6TJD2_PANMI (Integrase catalytic domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6TJD2_PANMI)

HSP 1 Score: 61.6 bits (148), Expect = 1.440e-9
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M+ E+  +E NKTWS L +LP    PIG KWVF+ K +EHG +VK KARLV +G  Q  G
Sbjct:  430 MEEEMKSIEENKTWS-LIELPAGHKPIGLKWVFKVKRDEHGAIVKHKARLVAKGYVQRPG 488          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2K3JZM0_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JZM0_TRIPR)

HSP 1 Score: 61.2 bits (147), Expect = 1.780e-9
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            MK E D L  N TWS L  LP++R PIG KWVF+ K N  G + K KARLV +G +Q+ G
Sbjct:  157 MKCEYDALLTNNTWS-LVTLPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHG 215          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A075AN74_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AN74_ROZAC)

HSP 1 Score: 61.2 bits (147), Expect = 1.950e-9
Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQ 57
            +K E+DGL ++ TW P + +P++R PIG +WVF+ K N  G + + KARLV +G +Q
Sbjct:  283 VKEELDGLNSHGTWEPANTVPNDRVPIGCRWVFKLKRNADGSISRYKARLVAQGYSQ 339          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A5N6M2K8_9ASTR (GH18 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M2K8_9ASTR)

HSP 1 Score: 60.8 bits (146), Expect = 2.690e-9
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 0
Query:    2 KVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            KVE+  +  N+TW  L +LPD    IG KW+++ K NEHG +VK KARLV RG  QE G
Sbjct:   87 KVEMQAIVKNQTWQ-LVELPDYAKCIGVKWIYKTKLNEHGEIVKHKARLVARGYCQEQG 144          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A6D2I001_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I001_9BRAS)

HSP 1 Score: 60.1 bits (144), Expect = 5.000e-9
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIGE 61
            M+VE+D LE N+TW+ L++LP  +  IGSKWV++ K N  G +   KARLV  G+ Q  GE
Sbjct:  362 MRVEVDALEENQTWT-LEELPPGKRAIGSKWVYKIKYNSDGTIECYKARLVALGNRQIAGE 421          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: UPI0014440142 (hypothetical protein n=1 Tax=Acinetobacter indicus TaxID=756892 RepID=UPI0014440142)

HSP 1 Score: 58.2 bits (139), Expect = 8.810e-9
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 0
Query:    1 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 60
            M+ E++  E NK W  L   PD+RS IG+KWVF+ K +E G V++ KARLV +G +QE G
Sbjct:   48 MQEELNQFERNKVWK-LVPRPDDRSVIGTKWVFRNKLDEPGSVIRNKARLVAKGYSQEEG 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L9TUK8_PHAAN8.680e-1153.33Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A445IMH9_GLYSO7.640e-1048.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GGE6_FAGSY7.720e-1053.33CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A2N9I6J0_FAGSY7.720e-1053.33CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A3L6TJD2_PANMI1.440e-953.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3JZM0_TRIPR1.780e-953.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A075AN74_ROZAC1.950e-945.61Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A5N6M2K8_9ASTR2.690e-952.54GH18 domain-containing protein n=1 Tax=Mikania mic... [more]
A0A6D2I001_9BRAS5.000e-949.18Integrase catalytic domain-containing protein n=1 ... [more]
UPI00144401428.810e-950.00hypothetical protein n=1 Tax=Acinetobacter indicus... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 13..61
e-value: 3.6E-8
score: 33.4
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..57
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76057contigH-paniculata_contig76057:136..321 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76057.15597.1mRNA_H-paniculata_contig76057.15597.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig76057 127..321 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig76057.15597.1 ID=prot_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARL
VFRGDNQEIGEV
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like