mRNA_H-paniculata_contig76057.15597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN) HSP 1 Score: 66.2 bits (160), Expect = 3.870e-11 Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1
Query: 4 KAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
+AM EI +E NKTW L D P +PIG KWVF+ K NEHG + K KARLV +G +Q+ G
Sbjct: 850 EAMNAEIQAIEKNKTWE-LTDAPTGITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYG 910
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2K3JZM0_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JZM0_TRIPR) HSP 1 Score: 63.9 bits (154), Expect = 2.170e-10 Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
L+AMK E D L N TWS L LP++R PIG KWVF+ K N G + K KARLV +G +Q+ G
Sbjct: 154 LQAMKCEYDALLTNNTWS-LVTLPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHG 215
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9GGE6_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGE6_FAGSY) HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10 Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
AM+VEID LEAN TW+ L P + PIG KWV++ K N G V + KARLV +G NQ+ G
Sbjct: 499 AMRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 558
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9I6J0_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6J0_FAGSY) HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10 Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1
Query: 7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
AM+VEID LEAN TW+ L P + PIG KWV++ K N G V + KARLV +G NQ+ G
Sbjct: 549 AMRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 608
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A075AN74_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AN74_ROZAC) HSP 1 Score: 62.0 bits (149), Expect = 1.180e-9 Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQ 180
A+K E+DGL ++ TW P + +P++R PIG +WVF+ K N G + + KARLV +G +Q
Sbjct: 282 AVKEELDGLNSHGTWEPANTVPNDRVPIGCRWVFKLKRNADGSISRYKARLVAQGYSQ 339
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A445IMH9_GLYSO (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IMH9_GLYSO) HSP 1 Score: 61.6 bits (148), Expect = 1.620e-9 Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query: 10 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
M E+ +E NKTW L ++PD PIG KW+F+ K NEHG + K KAR+V +G Q+ G
Sbjct: 1 MNAEMKAIEKNKTWE-LVNIPDGVKPIGVKWIFKTKFNEHGQIEKYKARIVVKGYAQQYG 59
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A5N6M2K8_9ASTR (GH18 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M2K8_9ASTR) HSP 1 Score: 61.2 bits (147), Expect = 2.230e-9 Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
A KVE+ + N+TW L +LPD IG KW+++ K NEHG +VK KARLV RG QE G
Sbjct: 85 ATKVEMQAIVKNQTWQ-LVELPDYAKCIGVKWIYKTKLNEHGEIVKHKARLVARGYCQEQG 144
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A6D2I001_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I001_9BRAS) HSP 1 Score: 60.8 bits (146), Expect = 3.030e-9 Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query: 7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIGE 192
AM+VE+D LE N+TW+ L++LP + IGSKWV++ K N G + KARLV G+ Q GE
Sbjct: 361 AMRVEVDALEENQTWT-LEELPPGKRAIGSKWVYKIKYNSDGTIECYKARLVALGNRQIAGE 421
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A392LYW4_9FABA (Cysteine-rich RLK (Receptor-like protein kinase) 8 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYW4_9FABA) HSP 1 Score: 60.8 bits (146), Expect = 3.060e-9 Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
+KAM+VEI+ L NKTW +D P + PIGSKWV++ K + G + + KARLV +G NQ+ G
Sbjct: 824 VKAMQVEIEALNTNKTWEFVDPPPGAQ-PIGSKWVYKVKRHADGSIERFKARLVAQGFNQQEG 885
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: UPI0012D2D076 (hypothetical protein n=1 Tax=Aeromonas hydrophila TaxID=644 RepID=UPI0012D2D076) HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9 Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query: 1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
+KAM+ E+ + + W L LP+ SPIG+KWVF+ KT+E G VVK KARLV +G QE G
Sbjct: 242 VKAMQEELQRFKRQQVWE-LVPLPENVSPIGTKWVFKNKTDERGIVVKNKARLVVQGYRQEEG 303 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig76057.15597.1 >prot_H-paniculata_contig76057.15597.1 ID=prot_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLback to top mRNA from alignment at H-paniculata_contig76057:127..321+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig76057.15597.1 ID=mRNA_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig76057:127..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig76057:127..321+ >mRNA_H-paniculata_contig76057.15597.1 ID=mRNA_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig76057:127..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |