mRNA_H-paniculata_contig76057.15597.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig76057.15597.1
Unique NamemRNA_H-paniculata_contig76057.15597.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A0L9TUK8_PHAAN (Uncharacterized protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9TUK8_PHAAN)

HSP 1 Score: 66.2 bits (160), Expect = 3.870e-11
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 1
Query:    4 KAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            +AM  EI  +E NKTW  L D P   +PIG KWVF+ K NEHG + K KARLV +G +Q+ G
Sbjct:  850 EAMNAEIQAIEKNKTWE-LTDAPTGITPIGVKWVFKTKLNEHGNIEKHKARLVAKGYSQQYG 910          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2K3JZM0_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JZM0_TRIPR)

HSP 1 Score: 63.9 bits (154), Expect = 2.170e-10
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            L+AMK E D L  N TWS L  LP++R PIG KWVF+ K N  G + K KARLV +G +Q+ G
Sbjct:  154 LQAMKCEYDALLTNNTWS-LVTLPEDRHPIGCKWVFRLKQNPDGTINKYKARLVAKGFHQKHG 215          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9GGE6_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GGE6_FAGSY)

HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            AM+VEID LEAN TW+ L   P  + PIG KWV++ K N  G V + KARLV +G NQ+ G
Sbjct:  499 AMRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 558          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A2N9I6J0_FAGSY (CCHC-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9I6J0_FAGSY)

HSP 1 Score: 63.2 bits (152), Expect = 4.690e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1
Query:    7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            AM+VEID LEAN TW+ L   P  + PIG KWV++ K N  G V + KARLV +G NQ+ G
Sbjct:  549 AMRVEIDALEANHTWT-LTASPPNKKPIGCKWVYKIKYNPDGSVERYKARLVAKGYNQQEG 608          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A075AN74_ROZAC (Reverse transcriptase, RNA-dependent DNA polymerase domain-containing protein n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AN74_ROZAC)

HSP 1 Score: 62.0 bits (149), Expect = 1.180e-9
Identity = 27/58 (46.55%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQ 180
            A+K E+DGL ++ TW P + +P++R PIG +WVF+ K N  G + + KARLV +G +Q
Sbjct:  282 AVKEELDGLNSHGTWEPANTVPNDRVPIGCRWVFKLKRNADGSISRYKARLVAQGYSQ 339          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A445IMH9_GLYSO (Retrovirus-related Pol polyprotein from transposon RE2 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445IMH9_GLYSO)

HSP 1 Score: 61.6 bits (148), Expect = 1.620e-9
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   10 MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            M  E+  +E NKTW  L ++PD   PIG KW+F+ K NEHG + K KAR+V +G  Q+ G
Sbjct:    1 MNAEMKAIEKNKTWE-LVNIPDGVKPIGVKWIFKTKFNEHGQIEKYKARIVVKGYAQQYG 59          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A5N6M2K8_9ASTR (GH18 domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M2K8_9ASTR)

HSP 1 Score: 61.2 bits (147), Expect = 2.230e-9
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            A KVE+  +  N+TW  L +LPD    IG KW+++ K NEHG +VK KARLV RG  QE G
Sbjct:   85 ATKVEMQAIVKNQTWQ-LVELPDYAKCIGVKWIYKTKLNEHGEIVKHKARLVARGYCQEQG 144          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A6D2I001_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I001_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 3.030e-9
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1
Query:    7 AMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIGE 192
            AM+VE+D LE N+TW+ L++LP  +  IGSKWV++ K N  G +   KARLV  G+ Q  GE
Sbjct:  361 AMRVEVDALEENQTWT-LEELPPGKRAIGSKWVYKIKYNSDGTIECYKARLVALGNRQIAGE 421          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: A0A392LYW4_9FABA (Cysteine-rich RLK (Receptor-like protein kinase) 8 (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392LYW4_9FABA)

HSP 1 Score: 60.8 bits (146), Expect = 3.060e-9
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            +KAM+VEI+ L  NKTW  +D  P  + PIGSKWV++ K +  G + + KARLV +G NQ+ G
Sbjct:  824 VKAMQVEIEALNTNKTWEFVDPPPGAQ-PIGSKWVYKVKRHADGSIERFKARLVAQGFNQQEG 885          
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Match: UPI0012D2D076 (hypothetical protein n=1 Tax=Aeromonas hydrophila TaxID=644 RepID=UPI0012D2D076)

HSP 1 Score: 60.5 bits (145), Expect = 3.500e-9
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:    1 LKAMKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARLVFRGDNQEIG 189
            +KAM+ E+   +  + W  L  LP+  SPIG+KWVF+ KT+E G VVK KARLV +G  QE G
Sbjct:  242 VKAMQEELQRFKRQQVWE-LVPLPENVSPIGTKWVFKNKTDERGIVVKNKARLVVQGYRQEEG 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig76057.15597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L9TUK8_PHAAN3.870e-1153.23Uncharacterized protein n=1 Tax=Phaseolus angulari... [more]
A0A2K3JZM0_TRIPR2.170e-1053.97Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9GGE6_FAGSY4.690e-1054.10CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A2N9I6J0_FAGSY4.690e-1054.10CCHC-type domain-containing protein n=1 Tax=Fagus ... [more]
A0A075AN74_ROZAC1.180e-946.55Reverse transcriptase, RNA-dependent DNA polymeras... [more]
A0A445IMH9_GLYSO1.620e-948.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6M2K8_9ASTR2.230e-952.46GH18 domain-containing protein n=1 Tax=Mikania mic... [more]
A0A6D2I001_9BRAS3.030e-950.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A392LYW4_9FABA3.060e-949.21Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
UPI0012D2D0763.500e-950.79hypothetical protein n=1 Tax=Aeromonas hydrophila ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig76057contigH-paniculata_contig76057:127..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog4538.ORGLA09G0171500.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size195
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.7609074-UTR-H-paniculata_contig76057:126..1351622930938.7609074-UTR-H-paniculata_contig76057:126..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76057 127..135 +
1691481519.4817626-UTR-H-paniculata_contig76057:126..1351691481519.4817626-UTR-H-paniculata_contig76057:126..135Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig76057 127..135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930938.7764487-CDS-H-paniculata_contig76057:135..3211622930938.7764487-CDS-H-paniculata_contig76057:135..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76057 136..321 +
1691481519.4937572-CDS-H-paniculata_contig76057:135..3211691481519.4937572-CDS-H-paniculata_contig76057:135..321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig76057 136..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig76057.15597.1prot_H-paniculata_contig76057.15597.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig76057 136..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig76057.15597.1

>prot_H-paniculata_contig76057.15597.1 ID=prot_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MKVEIDGLEANKTWSPLDDLPDERSPIGSKWVFQWKTNEHGYVVKAKARL
VFRGDNQEIGEV
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mRNA from alignment at H-paniculata_contig76057:127..321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig76057.15597.1 ID=mRNA_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig76057:127..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAAGCAATGAAGGTAGAGATTGACGGTTTGGAGGCCAACAAAACTTG GTCCCCACTAGACGATCTCCCAGATGAACGATCTCCGATCGGCTCAAAAT GGGTTTTCCAGTGGAAAACCAACGAACACGGGTACGTGGTGAAAGCCAAA GCACGGTTGGTTTTCAGAGGCGACAATCAGGAGATAGGAGAGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig76057:127..321+

>mRNA_H-paniculata_contig76057.15597.1 ID=mRNA_H-paniculata_contig76057.15597.1|Name=mRNA_H-paniculata_contig76057.15597.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig76057:127..321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGTAGAGATTGACGGTTTGGAGGCCAACAAAACTTGGTCCCCACT
AGACGATCTCCCAGATGAACGATCTCCGATCGGCTCAAAATGGGTTTTCC
AGTGGAAAACCAACGAACACGGGTACGTGGTGAAAGCCAAAGCACGGTTG
GTTTTCAGAGGCGACAATCAGGAGATAGGAGAGGTTATGAAGGTAGAGAT
TGACGGTTTGGAGGCCAACAAAACTTGGTCCCCACTAGACGATCTCCCAG
ATGAACGATCTCCGATCGGCTCAAAATGGGTTTTCCAGTGGAAAACCAAC
GAACACGGGTACGTGGTGAAAGCCAAAGCACGGTTGGTTTTCAGAGGCGA
CAATCAGGAGATAGGAGAGGTT
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