mRNA_H-paniculata_contig75643.15549.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig75643.15549.1
Unique NamemRNA_H-paniculata_contig75643.15549.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.360e-28
Identity = 67/152 (44.08%), Postives = 90/152 (59.21%), Query Frame = 1 
Query:    1 MIADSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLR-QDYNGTLYCLDLEISRKVNIMKEQQLQTPAALVTAAGADI 453
            M  D+GASNHF+DN+L   +E ++V++ + +PPL I  AG+  LHG  +G L+V   DQ    R+I+LP   VP LGRHLFS GTA K+GVST I +   LD   FK+PLR  D   TL+  DL I+          + T  A  T +G D+
Sbjct:   45 MTVDTGASNHFLDNELIPALEQRMVEYTKIDPPLLIHVAGQGQLHGTAKGALKVTVTDQNGNPRSIRLPFICVPKLGRHLFSGGTARKQGVSTFIGSTSFLDTGVFKIPLRPDDACDTLFHFDLAIA-------PDSVATHHAFSTISGLDL 189
[Close]
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.710e-25
Identity = 63/167 (37.72%), Postives = 93/167 (55.69%), Query Frame = 1 
Query:   13 SGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDL-----DQFKVPLRQDYNGTLYCLDLEIS-----RKVNIMKEQQLQTPAALVTAAGAD---IWHKRLGH 474
            SGAS H++D++L  ++E+ + DF     P  I  AG   L G  +G + VFAKD++   R ++    +VPGLGRHLFS GTA KKG +T++S+QP ++L     D   + L     GTLY LD+ +      R+  I +E       + V A  A+   +WH+RL H
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMSDQPRIELPATSRDGSTIALVLREVGTLYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAH 477
[Close]
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 7.190e-7
Identity = 44/160 (27.50%), Postives = 70/160 (43.75%), Query Frame = 1 
Query:   10 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 474
            DSGAS H      +D  +  +VD+V +  P  +      V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+    L        LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  288 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDNRVVEALGKGTVWLNIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTILGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 430
[Close]
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 7.220e-7
Identity = 44/160 (27.50%), Postives = 70/160 (43.75%), Query Frame = 1 
Query:   10 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 474
            DSGAS H      +D  +  +VD+V +  P  +      V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+    L        LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  290 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDNRVVEALGKGTVWLNIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTILGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 432
[Close]
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7GNP2_PARCT (Gag-pol poly n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP2_PARCT)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-6
Identity = 43/160 (26.88%), Postives = 70/160 (43.75%), Query Frame = 1 
Query:   10 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 474
            DSGAS H      +D  +  +VD+V +  P  +    + V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+             LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  285 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDKRVVEALGKGTVWLKIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTIWGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE1.360e-2844.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.710e-2537.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6S7GU81_PARCT7.190e-727.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HIB2_PARCT7.220e-727.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7GNP2_PARCT2.140e-626.88Gag-pol poly n=3 Tax=Paramuricea clavata TaxID=317... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75643contigH-paniculata_contig75643:57..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size480
Cds size480
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930930.192207-CDS-H-paniculata_contig75643:56..4471622930930.192207-CDS-H-paniculata_contig75643:56..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75643 57..447 +
1691481515.3149943-CDS-H-paniculata_contig75643:56..4471691481515.3149943-CDS-H-paniculata_contig75643:56..447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75643 57..447 +
1622930930.2155519-CDS-H-paniculata_contig75643:507..5961622930930.2155519-CDS-H-paniculata_contig75643:507..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75643 508..596 +
1691481515.3257854-CDS-H-paniculata_contig75643:507..5961691481515.3257854-CDS-H-paniculata_contig75643:507..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig75643 508..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75643.15549.1prot_H-paniculata_contig75643.15549.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig75643 57..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig75643.15549.1

>prot_H-paniculata_contig75643.15549.1 ID=prot_H-paniculata_contig75643.15549.1|Name=mRNA_H-paniculata_contig75643.15549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MIADSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRG
TLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPH
LDLDQFKVPLRQDYNGTLYCLDLEISRKVNIMKEQQLQTPAALVTAAGAD
IWHKRLGHPN
back to top

mRNA from alignment at H-paniculata_contig75643:57..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig75643.15549.1 ID=mRNA_H-paniculata_contig75643.15549.1|Name=mRNA_H-paniculata_contig75643.15549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig75643:57..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGCGGACAGCGGAGCGTCTAACCATTTTATTGACAACCAGCTGTT
CGACAACATCGAAAGCAAGATTGTAGACTTCGTCCAGTACAACCCTCCAC
TACCCATCTCTGCTGCAGGACGCCATGTTCTACATGGGATTGGGAGAGGT
ACGCTCCAAGTATTCGCGAAGGATCAGCAAGAACGCAAGCGCGCCATCCA
ACTCCCTGTGGCCATCGTTCCTGGACTTGGACGACACCTATTTTCGGCGG
GAACAGCATTGAAGAAGGGAGTATCAACCGTAATATCTAATCAGCCACAT
TTGGATCTGGATCAGTTTAAAGTACCACTTCGACAGGACTACAATGGGAC
ACTGTACTGCTTGGACCTAGAAATTTCACGTAAAGTCAACAGTACGAACG
TCGCACTATCTACTATTTCTGGGACCAGCATCACCGGTGGAACGGCACTA
GTCATGAAAGAGCAGCAACTACAGACACCAGCAGCCCTGGTAACAGCGGC
GGGAGCGGACATTTGGCACAAGCGTCTTGGTCATCCGAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig75643:57..596+

>mRNA_H-paniculata_contig75643.15549.1 ID=mRNA_H-paniculata_contig75643.15549.1|Name=mRNA_H-paniculata_contig75643.15549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=960bp|location=Sequence derived from alignment at H-paniculata_contig75643:57..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGCGGACAGCGGAGCGTCTAACCATTTTATTGACAACCAGCTGTT
CGACAACATCGAAAGCAAGATTGTAGACTTCGTCCAGTACAACCCTCCAC
TACCCATCTCTGCTGCAGGACGCCATGTTCTACATGGGATTGGGAGAGGT
ACGCTCCAAGTATTCGCGAAGGATCAGCAAGAACGCAAGCGCGCCATCCA
ACTCCCTGTGGCCATCGTTCCTGGACTTGGACGACACCTATTTTCGGCGG
GAACAGCATTGAAGAAGGGAGTATCAACCGTAATATCTAATCAGCCACAT
TTGGATCTGGATCAGTTTAAAGTACCACTTCGACAGGACTACAATGGGAC
ACTGTACTGCTTGGACCTAGAAATTTCACGTAAAGTCAACAATGATAGCG
GACAGCGGAGCGTCTAACCATTTTATTGACAACCAGCTGTTCGACAACAT
CGAAAGCAAGATTGTAGACTTCGTCCAGTACAACCCTCCACTACCCATCT
CTGCTGCAGGACGCCATGTTCTACATGGGATTGGGAGAGGTACGCTCCAA
GTATTCGCGAAGGATCAGCAAGAACGCAAGCGCGCCATCCAACTCCCTGT
GGCCATCGTTCCTGGACTTGGACGACACCTATTTTCGGCGGGAACAGCAT
TGAAGAAGGGAGTATCAACCGTAATATCTAATCAGCCACATTTGGATCTG
GATCAGTTTAAAGTACCACTTCGACAGGACTACAATGGGACACTGTACTG
CTTGGACCTAGAAATTTCACGTAAAGTCAACATCATGAAAGAGCAGCAAC
TACAGACACCAGCAGCCCTGGTAACAGCGGCGGGAGCGGACATTTGGCAC
AAGCGTCTTGGTCATCCGAATTCATGAAAGAGCAGCAACTACAGACACCA
GCAGCCCTGGTAACAGCGGCGGGAGCGGACATTTGGCACAAGCGTCTTGG
TCATCCGAAT
back to top