prot_H-paniculata_contig75643.15549.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig75643.15549.1
Unique Nameprot_H-paniculata_contig75643.15549.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length160
Homology
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6H5KAG6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG6_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.360e-28
Identity = 67/152 (44.08%), Postives = 90/152 (59.21%), Query Frame = 0
Query:    1 MIADSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLR-QDYNGTLYCLDLEISRKVNIMKEQQLQTPAALVTAAGADI 151
            M  D+GASNHF+DN+L   +E ++V++ + +PPL I  AG+  LHG  +G L+V   DQ    R+I+LP   VP LGRHLFS GTA K+GVST I +   LD   FK+PLR  D   TL+  DL I+          + T  A  T +G D+
Sbjct:   45 MTVDTGASNHFLDNELIPALEQRMVEYTKIDPPLLIHVAGQGQLHGTAKGALKVTVTDQNGNPRSIRLPFICVPKLGRHLFSGGTARKQGVSTFIGSTSFLDTGVFKIPLRPDDACDTLFHFDLAIA-------PDSVATHHAFSTISGLDL 189          
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.710e-25
Identity = 63/167 (37.72%), Postives = 93/167 (55.69%), Query Frame = 0
Query:    5 SGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDL-----DQFKVPLRQDYNGTLYCLDLEIS-----RKVNIMKEQQLQTPAALVTAAGAD---IWHKRLGH 158
            SGAS H++D++L  ++E+ + DF     P  I  AG   L G  +G + VFAKD++   R ++    +VPGLGRHLFS GTA KKG +T++S+QP ++L     D   + L     GTLY LD+ +      R+  I +E       + V A  A+   +WH+RL H
Sbjct:  311 SGASGHYLDSELLPDLENILDDFTYITTPTKIIGAGGIELEGTSKGIISVFAKDEEGNDRRVRFKCTVVPGLGRHLFSTGTAQKKGANTIMSDQPRIELPATSRDGSTIALVLREVGTLYFLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAH 477          
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7GU81_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GU81_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 7.190e-7
Identity = 44/160 (27.50%), Postives = 70/160 (43.75%), Query Frame = 0
Query:    4 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 158
            DSGAS H      +D  +  +VD+V +  P  +      V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+    L        LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  288 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDNRVVEALGKGTVWLNIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTILGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 430          
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7HIB2_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HIB2_PARCT)

HSP 1 Score: 58.2 bits (139), Expect = 7.220e-7
Identity = 44/160 (27.50%), Postives = 70/160 (43.75%), Query Frame = 0
Query:    4 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 158
            DSGAS H      +D  +  +VD+V +  P  +      V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+    L        LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  290 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDNRVVEALGKGTVWLNIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTILGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 432          
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Match: A0A6S7GNP2_PARCT (Gag-pol poly n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP2_PARCT)

HSP 1 Score: 56.6 bits (135), Expect = 2.140e-6
Identity = 43/160 (26.88%), Postives = 70/160 (43.75%), Query Frame = 0
Query:    4 DSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRGTLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPHLDLDQFKVPLRQD-YNGTLYCLDLEISR----KVNIMKEQQLQTPAALVTAAGADIWHKRLGH 158
            DSGAS H      +D  +  +VD+V +  P  +    + V+  +G+GT+ +  K + + K A  + V  VP L ++LFS     K+G S  +     + LD+             LY LD+   +     VN    + L+           D+WH+R GH
Sbjct:  285 DSGASQHMS----YD--KEMMVDYVHFVNPQRVRLGDKRVVEALGKGTVWLKIKAENDYKPARLVDVLYVPDLAKNLFSVSVVAKRGYSVELQQSGCVILDKCGTIWGSGKMQNNLYVLDISEKKVDCHDVNAATNEHLE-----------DLWHQRYGH 427          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig75643.15549.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KAG6_9PHAE1.360e-2844.08Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KY84_9PHAE1.710e-2537.72Integrase catalytic domain-containing protein n=1 ... [more]
A0A6S7GU81_PARCT7.190e-727.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7HIB2_PARCT7.220e-727.50Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7GNP2_PARCT2.140e-626.88Gag-pol poly n=3 Tax=Paramuricea clavata TaxID=317... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig75643contigH-paniculata_contig75643:57..596 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig75643.15549.1mRNA_H-paniculata_contig75643.15549.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig75643 57..596 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig75643.15549.1 ID=prot_H-paniculata_contig75643.15549.1|Name=mRNA_H-paniculata_contig75643.15549.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=160bp
MIADSGASNHFIDNQLFDNIESKIVDFVQYNPPLPISAAGRHVLHGIGRG
TLQVFAKDQQERKRAIQLPVAIVPGLGRHLFSAGTALKKGVSTVISNQPH
LDLDQFKVPLRQDYNGTLYCLDLEISRKVNIMKEQQLQTPAALVTAAGAD
IWHKRLGHPN
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