mRNA_H-paniculata_contig7533.15517.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: D7G7B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7B6_ECTSI) HSP 1 Score: 105 bits (261), Expect = 3.670e-24 Identity = 94/110 (85.45%), Postives = 99/110 (90.00%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGAEEGG-DY 327
MLLVLGGN +PTK DVTTALAAVG++ DEARLD LIA+MAGKDI ALIE+GKGKLAS GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMF EGG DY
Sbjct: 1 MLLVLGGNASPTKEDVTTALAAVGIECDEARLDQLIADMAGKDIAALIEAGKGKLASFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFXXXXEGGGDY 110
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A835ZFT3_9STRA (60s acidic ribosomal protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.260e-19 Identity = 86/110 (78.18%), Postives = 98/110 (89.09%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IDMGGGMDMFGGAEEGGDY 327
M+LVLGGN +P+ DVT AL++VG++ADEARL LIAEM GKD+N ++E+GK KLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +DMGGGMDMFGG E GGDY
Sbjct: 8 MMLVLGGNASPSAEDVTKALSSVGIEADEARLSQLIAEMEGKDLNEVMEAGKKKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDMGGGMDMFGGGE-GGDY 116
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A7R9ZND5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZND5_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.170e-15 Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IDMGGGMDMFGGAEEGGDY 327
+L VLGG PTK D++ A++ VG++AD+A +D L+ + GKD+N L+ESGKG LA +G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +D+GGGMDMFGG E GGDY
Sbjct: 8 LLCVLGGKENPTKDDISKAMSTVGLEADDASVDALLTALEGKDLNELLESGKGLLAKIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMDLGGGMDMFGGDEGGGDY 117
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A7S0C3X8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C3X8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 2.920e-15 Identity = 76/109 (69.72%), Postives = 89/109 (81.65%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGAEEGGDY 327
+LLVLGGN +P+ DV AL VGV+ ++ RL+ LI+E+ GKD++ LI +G GKLA LG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX+DMGGGMDMFGG GDY
Sbjct: 8 LLLVLGGNASPSADDVKKALGVVGVEVEDERLNALISELEGKDLSELIATGTGKLAQLGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMDMGGGMDMFGGEAATGDY 116
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A7S1BJ38_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BJ38_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 7.270e-15 Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGAEEGGDY 327
+L VLGGN +P+ DVTTAL+AVGV+AD RL L+ ++ GKD+N L+ SGKG LA GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMFGG +E GDY
Sbjct: 8 LLCVLGGNESPSVSDVTTALSAVGVEADSERLATLVKDLEGKDLNELLTSGKGLLAKFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-ADMGGGMDMFGG-DEAGDY 114
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A7S2RFX2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RFX2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 7.670e-15 Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGAE--EGGDY 327
+LLVLGGN +P+ DVT +LA+VGV+ D+ LD LI+E+ GKD+N ++ESGK LA GXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DMGGGMDMFGG E +GGDY
Sbjct: 8 LLLVLGGNASPSADDVTKSLASVGVEVDKESLDKLISELDGKDVNEIMESGKDMLAKFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--ADMGGGMDMFGGDEAGDGGDY 116
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A7S3Q302_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q302_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 3.920e-11 Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLG 177
+LLVLGGN +P+ DVTTALAAVGV+AD A LD +AEM GKDI+ + +GK LA G
Sbjct: 8 LLLVLGGNESPSAADVTTALAAVGVEADSASLDKFLAEMEGKDIDETLAAGKELLAKFG 66
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A1V9ZUV4_9STRA (Ribosomal protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUV4_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 7.390e-11 Identity = 69/109 (63.30%), Postives = 81/109 (74.31%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIDMGGGMDMFGGAEEGGDY 327
+L VLGGN TP+ DV+ + AVG +ADE RL LLI E+ GKDI +I G+ KL+++ XXXXXXXXXXXXXXXXXXXXXXXXXX D+GGGMDMFGG G DY
Sbjct: 8 LLCVLGGNATPSVADVSAVITAVGGEADEERLALLIKELEGKDIAEVIAEGQKKLSTVSIGAASXXXXXXXXXXXXXXXXXXXXXXXXXXADLGGGMDMFGG---GSDY 113
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A3N2PM58_9PEZI (Ribosomal protein 60S n=1 Tax=Sodiomyces alkalinus F11 TaxID=1314773 RepID=A0A3N2PM58_9PEZI) HSP 1 Score: 68.2 bits (165), Expect = 1.290e-10 Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASL 174
+LL LGGN +P+ DV T L +VG++ADE RL+ LI+E+ GKDIN LI G GKLAS+
Sbjct: 8 LLLGLGGNTSPSAEDVKTVLESVGIEADEERLEKLISELEGKDINQLISEGSGKLASV 65
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Match: A0A2R6NKQ1_9APHY (Uncharacterized protein n=3 Tax=Polyporales TaxID=5303 RepID=A0A2R6NKQ1_9APHY) HSP 1 Score: 68.2 bits (165), Expect = 1.320e-10 Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 1
Query: 1 MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESGKGKLASL 174
+LL +GGN +P+ GDV LAAVG++ADE RL+ LI+E+ GKDIN LI G KL+S+
Sbjct: 8 LLLQIGGNTSPSAGDVKKVLAAVGIEADEERLEKLISELEGKDINTLIAEGSSKLSSV 65 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7533.15517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7533.15517.1 >prot_H-paniculata_contig7533.15517.1 ID=prot_H-paniculata_contig7533.15517.1|Name=mRNA_H-paniculata_contig7533.15517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp MLLVLGGNPTPTKGDVTTALAAVGVDADEARLDLLIAEMAGKDINALIESback to top mRNA from alignment at H-paniculata_contig7533:803..2592- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7533.15517.1 ID=mRNA_H-paniculata_contig7533.15517.1|Name=mRNA_H-paniculata_contig7533.15517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1790bp|location=Sequence derived from alignment at H-paniculata_contig7533:803..2592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7533:803..2592- >mRNA_H-paniculata_contig7533.15517.1 ID=mRNA_H-paniculata_contig7533.15517.1|Name=mRNA_H-paniculata_contig7533.15517.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig7533:803..2592- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |