mRNA_H-paniculata_contig7479.15461.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: D7FNP3_ECTSI (Poly(A) binding protein, cytoplasmic 4-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP3_ECTSI) HSP 1 Score: 389 bits (999), Expect = 3.030e-115 Identity = 229/378 (60.58%), Postives = 256/378 (67.72%), Query Frame = 2
Query: 863 YTQPKQVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPG-ITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRS---------------------SGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSRSSSGQGQGGNSGAGG-WRKNVGISGGSNRSRRGSLDRGADDHSRQMMPHGGGQGFGGRPGRSSLDGAGR-----GGWG 1912
+ Q +VMSVSIKRDRATGKNLGYGFVK+SSHQEAR AKEAMQ VELGGRRVRVGWAQKNTSLYVGGLE G ITT+ML+ EFARFGPLDKELT IKPGAK GFVKYRYRLHAE AKK+LN RPAF G CPSL IEWNSVES SE GS A + S P E S +++VHVQFEG+Q VS VNE+MI+K FT+WEP++++VIP+SRFNGVSPGPRQLPRCW FVHFPPTP+GE AA DAI+ L GTTI+ ++VHCTMSR GG++ AG WRK NR+RR S D R M QGFGGRP RSSLD G GGWG
Sbjct: 225 FEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAXXXXXXXXXXXXXXXXKEXXXXXXXXXXXXXXXXXXXAHSRHPRGEVS-SHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAADAIKGLNGTTISELRVHCTMSR-------GGSTRAGSPWRKQGXXXXXXNRARRHSTXXXXXD--RAMGHAXXXQGFGGRPSRSSLDHPGAQQGRSGGWG 592
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A6H5L4J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J2_9PHAE) HSP 1 Score: 371 bits (952), Expect = 2.220e-107 Identity = 196/300 (65.33%), Postives = 222/300 (74.00%), Query Frame = 2
Query: 863 YTQPKQVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPG-ITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSG---------------------SLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
+ Q +VMSVSIKRDRATGKNLGYGFVK+SSHQEAR AKEAMQ VELGGRRVRVGWAQKNTSLYVGGLE G ITT+ML+ EFARFGPLDKELT IKPGAK GFVKYRYRLHAE AKK+LN RPAF G CPSL IEWNSVES SE GS A ++ S P E S +++VHVQFEG+Q VS VNE+MI+K FT+WEP++++VIP+SRFNGVSPGPRQLPRCW FVHFPPTP+GE AA +AI+ L GTTI+ ++VHCTMSR
Sbjct: 88 FEQHGRVMSVSIKRDRATGKNLGYGFVKLSSHQEARAAKEAMQGVELGGRRVRVGWAQKNTSLYVGGLEGGAITTEMLVREFARFGPLDKELTTIKPGAKFGFVKYRYRLHAEAAKKELNERPAFDGLCPSLEIEWNSVESSAQASETAGSEKSTAEDRTXXXXXXXXXXXXKXXXXXXXXXXXXXXXXXXXXAHSRHPRGEVS-SHTVHVQFEGDQGHVSAVNEVMIRKCFTKWEPVVDIVIPASRFNGVSPGPRQLPRCWAFVHFPPTPDGERAAANAIKDLNGTTISELRVHCTMSR 386
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A836CDW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDW8_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.720e-31 Identity = 112/336 (33.33%), Postives = 156/336 (46.43%), Query Frame = 2
Query: 872 PKQVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKP-GAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRF----------------------------------------------------NGVSPGPRQL------PRCWGFVHFPPTPEGEEAAKDAIEALTGT-TIAGMKVHCTMSRS 1699
P++V++V+IKRDR+T KNLGYGFV+M SH EA AKE M E+ GRR+RVGWAQKN +L V GL G+T + + F FG L++E T + G+ VKYR RLHAE A++ LN A G P L ++W++ G AVG A+ R G R + + P R V V EGE A+ E + + F + P+++V P + G+ PR L R + V FPPT G+ A A+ A++GT T +G+KV C++ RS
Sbjct: 38 PRRVLTVNIKRDRSTSKNLGYGFVRMGSHAEACVAKERMHRAEVHGRRIRVGWAQKNAALAVSGLPDGVTAEQVKALFRPFGALEEENTQLMTDGSGTAVVKYRNRLHAEDARRQLNGSQALG-PAP-LRVDWSAPAGG-----AVGGAQSKAAPHRGG--------REATAPAPCR-------VQVMLEGEAASDLQEVEETVLRLFQDFAPLVSVSTPRAEAARAPSAAKAGQDAXXXXXXXXXXXXXXXXXTAPKEAAPATGMSAADALVADTQGLQLRPRPLHKPARPQRAYCAVTFPPTRAGQARAMAAMAAISGTVTPSGLKVTCSLIRS 351
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: L8H825_ACACA (RNA recognition motif domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H825_ACACA) HSP 1 Score: 139 bits (351), Expect = 1.820e-31 Identity = 90/275 (32.73%), Postives = 145/275 (52.73%), Query Frame = 2
Query: 872 PKQVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
P V+SV IKRDR T +LGYGFV + S ++A AK+AM +GGR +R+GWAQKNT+L++G L+P IT+ L F +FGP+ +E T +K GFV++R+R HAE AK+++NN+ G + + I W G+A+ +R + VH+QFE ++ +E++ K F ++ +++V +P ++ QL R +GF+++ T GE +A AI L + I G+++ C +
Sbjct: 85 PFGVISVEIKRDRVTNYSLGYGFVLLKSREDAGAAKKAMHRQVVGGRAIRIGWAQKNTNLFIGDLDPSITSAQLREVFRQFGPIYEEETFVK-NRNYGFVRFRHRKHAEMAKREMNNK-VLGARA--IRIGW-----------------GDANYQR-------------------------HCVHIQFEPAESEALTESEVIAK--FEEFGTVMSVNLPRNQ--------GQL-RGFGFIYYDDTDAGENSAARAITTLNNSPICGVRIQCNYGK 302
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A7S3DFR0_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFR0_9EUKA) HSP 1 Score: 137 bits (345), Expect = 2.230e-30 Identity = 81/278 (29.14%), Postives = 143/278 (51.44%), Query Frame = 2
Query: 863 YTQPKQVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
+ Q +V+++ IKRDR T +LGYGFV+ ++A AK+ + +G R +R+GWAQKNT+L++G L+ +T+++L EF +FGPL +E T +K G GFV++R R AETAK+++ + F G+ + I W +S + N VH +F+ Q+ + ++E ++ F ++ + +V +P + + P+ +GFV+F + G+ AA +AI + G IAG+++ C + +
Sbjct: 46 FLQFGEVINIDIKRDRMTSNSLGYGFVEFQRFEDALEAKKQLSGARIGERAIRLGWAQKNTNLFIGDLDASVTSEILFNEFKQFGPLFEEDTFVKEGMSYGFVRFRKREDAETAKREMQGKN-FHGRV--IRIGWGDAKS------------------------------------------IDNCVHFRFDTSQSKAA-ISEATVRDVFGKFGNVESVSLPRNSDD--------TPKGFGFVYFSNSSAGQAAANNAIAEVNGKVIAGVELTCKLGK 269
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A7S0DL40_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DL40_9EUKA) HSP 1 Score: 135 bits (339), Expect = 1.240e-29 Identity = 90/276 (32.61%), Postives = 139/276 (50.36%), Query Frame = 2
Query: 881 VMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQF----EGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
V++V IKRDR T NLGYGFV+ +H++A AK+A+ VE+ GR++R GWAQ+NT+L+VG L+ I + F+R+G L + T K G VK++ R +AETAK +LN + + P + + W G+ S ++ + VHV+F E + S ++E +++K F ++ +L V +P N + + +GFVHF T +GEE+AK AI L+GT I + V C R
Sbjct: 101 VVNVDIKRDRVTNNNLGYGFVQFETHEQALKAKKALHGVEVSGRKIRTGWAQRNTTLFVGDLDNTIDATVYRTAFSRYGNLVDDETYFKVDKGFGMVKFKTRENAETAKVELNGKRIGQSKRP-VRVIW-----------------GDTSVQK-------------------------HCVHVKFDVGKEVKSIQESEISEDVLQKVFQEYGQVLTVNLPRHSDNTL--------KGYGFVHFEDTEKGEESAKKAIANLSGTKIGRLVVQCNYGR 325
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A7S0TF52_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TF52_9EUKA) HSP 1 Score: 125 bits (314), Expect = 1.260e-27 Identity = 93/282 (32.98%), Postives = 132/282 (46.81%), Query Frame = 2
Query: 884 MSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYV---GGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAK-----KDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIP---SSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
+ V IKRD+ T NLGYGFVK + A AK + +E+ GR +R+GWAQKNT+L+V G +E IT + L F+ FGP+ +E T +K K GFVK+++RLHAE AK K L + + P + I W G+A+ +R N VHVQFE A+ + E K+ F ++ + V +P R G +GF+HF EGEE+A AI LT + I G+ + C +
Sbjct: 31 VEVDIKRDKVTKNNLGYGFVKFRNRCHAEQAKRKLNGLEIAGRAIRIGWAQKNTNLFVCLVGDVERHITGEHLREIFSEFGPIYEEDTFVKRN-KYGFVKFKHRLHAEKAKAALDGKHLLTKNGYKTMKP-VRIGW-----------------GDANTQR-------------------------NCVHVQFEQNSASSVDLKEEDFKQQFQRFGVVNKVSLPRYSDKRLKG-----------YGFIHFEENDEGEESAARAITELTASPIKGVVIMCNFGK 257
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A7S3Z8S4_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z8S4_9EUKA) HSP 1 Score: 129 bits (324), Expect = 1.840e-27 Identity = 89/276 (32.25%), Postives = 140/276 (50.72%), Query Frame = 2
Query: 881 VMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVGSTDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFE-GEQAAV---SGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRCWGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
V++V IKRD+ T NLGYGFV+ +H+EA AK+A+ V + GR++R GWAQ+NT+L+VG L+ + FAR+G L + T K G VKY+ R +AETAK +LN + + P + + W G+ S ++ + VHV+F+ G++ S ++E ++K F+++ + +V +P R N Q + +GFVHF + +GEE+AK AI L+GT I + + C R
Sbjct: 134 VVNVDIKRDKVTHNNLGYGFVQFETHEEAVKAKKALHGVVVSGRKIRTGWAQRNTTLFVGDLDSFVDESEYRAAFARYGSLVLDETYFKVDKGFGMVKYKTRENAETAKMELNGKKIGKSKRP-VRVIW-----------------GDTSVQK-------------------------HCVHVKFDVGKEVKTIQDSDISEDDLQKVFSEYGQVQSVNLP--RHND------QSLKGYGFVHFEDSEKGEESAKKAIANLSGTKIGRLVIQCNYGR 358
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: W7TSQ6_9STRA (Tia1 cytotoxic granule-associated rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSQ6_9STRA) HSP 1 Score: 125 bits (314), Expect = 1.540e-25 Identity = 93/278 (33.45%), Postives = 145/278 (52.16%), Query Frame = 2
Query: 881 VMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPG--AKCGFVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEWNSVESGPDGSEAVG-STDGNASEKRAGSDMENTSTRSSGSLRPGREGSVANSVHVQFEGEQAAVSGVNEMMIKKTFTQWEPILNVVIPSSRFNGVSPGPRQLPRC---WGFVHFPPTPEGEEAAKDAIEALTGTTIAGMKVHCTMSR 1696
V V IKRD+ T +NLGYGFV+MSSH++A AKE MQ ++ GRR+R+GWAQ+NT+L++G L+ + L F FG L + ++ G K G VK+ R AETA+++++ R G P + + W+ ++ ++ G S ++E+ + + +G L R SV HV FE + + V E +I F + I+ V++P S + C +GFVHF + G A +AI L G +AG+++ C SR
Sbjct: 131 VEMVDIKRDKVTMRNLGYGFVQMSSHEQAAVAKERMQGADIQGRRIRIGWAQRNTTLFIGDLDESTNVEDLHRTFGPFGLLYTNDSYLRQGKCGKYGSVKFMSRKDAETARREMHGRVLRDGTRP-IRVVWHHPQTI---TKKTGLSVPLPSNEQHSRELVHIPPPPPAGVLVSSRPYSV----HVHFEAD-GMENLVTENLIYGLFAPFGQIIAVILPQGPGILCSDQNEDVSCCRRGYGFVHFTGSALGRLCAIEAIRTLQGEIVAGIRLQCAFSR 399
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Match: A0A7S2RB19_9STRA (Hypothetical protein n=4 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RB19_9STRA) HSP 1 Score: 121 bits (304), Expect = 3.570e-24 Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 2
Query: 878 QVMSVSIKRDRATGKNLGYGFVKMSSHQEARTAKEAMQNVELGGRRVRVGWAQKNTSLYVGGLEPGITTQMLIGEFARFGPLDKELTAIKPGAKCG-------------FVKYRYRLHAETAKKDLNNRPAFGGQCPSLHIEW 1267
+V+ V +KRDR T +NLGYGFV+M SH EA AKE+M E+ GRRVRVGWA KN++L V L+PG++ + L+ FARFGPLD + + ++P C K+ R HAE+AK++L+ P L ++W
Sbjct: 78 RVVEVLVKRDRLTHRNLGYGFVRMGSHAEACLAKESMHGREVAGRRVRVGWAMKNSTLVVKDLDPGLSEEDLLNAFARFGPLDLDQSGVRPAEPCSEEEEAGGSTALQAVFKFTQRTHAESAKQNLSGMMLASSSAP-LRVDW 219 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7479.15461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig7479.15461.1 >prot_H-paniculata_contig7479.15461.1 ID=prot_H-paniculata_contig7479.15461.1|Name=mRNA_H-paniculata_contig7479.15461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=721bp MLVLDEMCMRVFFLQAKQNYLYAYTCHVFFFKSPAIHAYVCALVDIVSKHback to top mRNA from alignment at H-paniculata_contig7479:2198..10545- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig7479.15461.1 ID=mRNA_H-paniculata_contig7479.15461.1|Name=mRNA_H-paniculata_contig7479.15461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8348bp|location=Sequence derived from alignment at H-paniculata_contig7479:2198..10545- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig7479:2198..10545- >mRNA_H-paniculata_contig7479.15461.1 ID=mRNA_H-paniculata_contig7479.15461.1|Name=mRNA_H-paniculata_contig7479.15461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4326bp|location=Sequence derived from alignment at H-paniculata_contig7479:2198..10545- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |