mRNA_H-paniculata_contig74053.15380.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: E6ZET8_ECTSI (Ribosomal protein L31 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET8_ECTSI) HSP 1 Score: 144 bits (363), Expect = 7.190e-44 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNVQ 207
MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNVQ
Sbjct: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNVQ 69
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A0N9LUM1_9PHAE (Ribosomal protein L31 n=2 Tax=Laminariaceae TaxID=33636 RepID=A0A0N9LUM1_9PHAE) HSP 1 Score: 99.8 bits (247), Expect = 3.540e-26 Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNV 204
M+S VK+K FGS+LSDGSF FL LPS+ SQ+ LNY +D NHPVWTGKRPKEQTEISLF+ + K++
Sbjct: 1 MKSIVKAKTFGSLLSDGSFNFLDLPSHFSQKELNYKSLDLNNHPVWTGKRPKEQTEISLFVGKFTKSL 68
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A0U1XGS1_9PHAE (Ribosomal protein L31 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XGS1_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 4.760e-26 Identity = 51/66 (77.27%), Postives = 52/66 (78.79%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNK 198
MQ KSKLFG+ILSDGS F L SYQSQR LN KID LNHPVWTGKRP EQTEIS FINRLNK
Sbjct: 1 MQLTNKSKLFGNILSDGSLVFRTLSSYQSQRFLNSKKIDLLNHPVWTGKRPSEQTEISSFINRLNK 66
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: V9PB22_UNDPI (Ribosomal protein L31 n=2 Tax=Undaria pinnatifida TaxID=74381 RepID=V9PB22_UNDPI) HSP 1 Score: 97.8 bits (242), Expect = 2.050e-25 Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNV 204
M+S VKSK+FG+ILSDGSF FL LPS+ SQ+ LN +D NHPVWTGKRPKEQTEIS+F+ + K++
Sbjct: 1 MKSTVKSKIFGNILSDGSFNFLNLPSFHSQKELNCKNLDLNNHPVWTGKRPKEQTEISIFVGKFIKSL 68
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A8F0K1A9_9PHAE (Ribosomal protein L31 n=1 Tax=Dictyoneurum californicum TaxID=169784 RepID=A0A8F0K1A9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.100e-25 Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNVQ 207
M+ +K+K FGS+LSDGSF FL LPSY SQ+ LN +D NHPVWTGKRPKEQTEISLF+ + K++Q
Sbjct: 1 MKCRIKNKTFGSVLSDGSFNFLILPSYSSQKELNCKSVDLNNHPVWTGKRPKEQTEISLFVGKFTKSLQ 69
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A8E8PFJ7_9PHAE (Ribosomal protein L31 n=5 Tax=Alaria TaxID=2888 RepID=A0A8E8PFJ7_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.130e-25 Identity = 44/68 (64.71%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNV 204
M+S +KSK FG+ILSDGSF FL LPSY SQ+ L+ +D NHPVWTGKRPKEQTEISLF+ + K++
Sbjct: 1 MKSVLKSKTFGNILSDGSFNFLSLPSYSSQKELHCKNLDLNNHPVWTGKRPKEQTEISLFVGKFTKSL 68
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: W5RG43_COSCS (Ribosomal protein L31 n=4 Tax=Laminariales TaxID=2886 RepID=W5RG43_COSCS) HSP 1 Score: 96.3 bits (238), Expect = 8.570e-25 Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNVQ 207
M+ + K FGS+LSDGSF FL LPSY SQ+ LNY +D NHPVWTGKRPKEQTEISLF+ + K+++
Sbjct: 1 MKWAINKKKFGSVLSDGSFNFLVLPSYLSQKELNYKPLDLNNHPVWTGKRPKEQTEISLFVGKFTKSLK 69
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A8F0K1D7_9PHAE (Ribosomal protein L31 n=2 Tax=Alariaceae TaxID=2887 RepID=A0A8F0K1D7_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.190e-24 Identity = 43/68 (63.24%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNV 204
M+ VKSK+FG+ILSDGSF FL LP++ SQ+ LN +D NHPVWTGKRPKEQTEISLF+++ K++
Sbjct: 1 MKLIVKSKIFGNILSDGSFNFLSLPTHSSQKELNCKTLDLNNHPVWTGKRPKEQTEISLFVSKFTKSL 68
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: S4S3U3_LAMHY (Ribosomal protein L31 n=3 Tax=Laminaria TaxID=33637 RepID=S4S3U3_LAMHY) HSP 1 Score: 94.7 bits (234), Expect = 3.400e-24 Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNKNV 204
M+ VK+K FGS+LS+GSF F+ LPSY SQ+ L+Y +D NHPVWTGKRPKEQTEISLF+ + K++
Sbjct: 1 MKLAVKTKTFGSVLSNGSFSFITLPSYFSQKELSYKSLDLNNHPVWTGKRPKEQTEISLFVGKFTKSL 68
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Match: A0A0U1XCD8_SCYLO (Ribosomal protein L31 n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0U1XCD8_SCYLO) HSP 1 Score: 94.4 bits (233), Expect = 4.580e-24 Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1
Query: 19 SKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRPKEQTEISLFINRLNK 198
SK FG+ILSDGSF FL LPS+ SQ+SLN KID L+HPVWTGKRP EQTEIS FINRL K
Sbjct: 7 SKTFGNILSDGSFTFLILPSFNSQKSLNSKKIDLLSHPVWTGKRPVEQTEISSFINRLKK 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig74053.15380.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig74053.15380.1 >prot_H-paniculata_contig74053.15380.1 ID=prot_H-paniculata_contig74053.15380.1|Name=mRNA_H-paniculata_contig74053.15380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MQSCVKSKLFGSILSDGSFRFLQLPSYQSQRSLNYNKIDNLNHPVWTGKRback to top mRNA from alignment at H-paniculata_contig74053:405..614+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig74053.15380.1 ID=mRNA_H-paniculata_contig74053.15380.1|Name=mRNA_H-paniculata_contig74053.15380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at H-paniculata_contig74053:405..614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig74053:405..614+ >mRNA_H-paniculata_contig74053.15380.1 ID=mRNA_H-paniculata_contig74053.15380.1|Name=mRNA_H-paniculata_contig74053.15380.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig74053:405..614+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |