prot_H-paniculata_contig12450.1537.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig12450.1537.1
Unique Nameprot_H-paniculata_contig12450.1537.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length193
Homology
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V0ZTL5_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0ZTL5_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 1.830e-7
Identity = 26/55 (47.27%), Postives = 30/55 (54.55%), Query Frame = 0
Query:    8 TTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            T N+ R  WA+A     Y  NR P R     TPYEKW G  P +EH  +FGC AY
Sbjct:  163 TRNLPRCLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLQIFGCDAY 217          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 60.5 bits (145), Expect = 2.720e-7
Identity = 27/61 (44.26%), Postives = 34/61 (55.74%), Query Frame = 0
Query:    2 TPSKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            T S + T  +   +W +A R  VY  NR  T+  N  TPYE+W G  P L+H  VFGC AY
Sbjct:  656 TRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAY 716          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V1GQ65_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GQ65_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 3.980e-7
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 0
Query:    4 SKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            S +   N+ R  WA+A     Y  NR P R     TPYEKW G  P +EH  +FGC AY
Sbjct:  195 SMLHARNLPRFLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAY 253          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A182GK47_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GK47_AEDAL)

HSP 1 Score: 58.5 bits (140), Expect = 4.450e-7
Identity = 26/62 (41.94%), Postives = 36/62 (58.06%), Query Frame = 0
Query:    1 MTPSKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            M  + ++   + +RYW +A     Y  NR PTR  +  TPYEKW G  P+L+H  V+GC AY
Sbjct:    1 MATTMLLDAGLDKRYWGEACVAAAYVQNRLPTRSVDT-TPYEKWCGRKPELDHLQVYGCPAY 61          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V1M2B3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella papuae TaxID=268474 RepID=A0A0V1M2B3_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 4.780e-7
Identity = 26/59 (44.07%), Postives = 31/59 (52.54%), Query Frame = 0
Query:    4 SKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            S +   N+ R  WA+A     Y  NR P R     TPYEKW G  P +EH  +FGC AY
Sbjct:  590 SMLHARNLPRCLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAY 648          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 58.9 bits (141), Expect = 9.080e-7
Identity = 25/59 (42.37%), Postives = 31/59 (52.54%), Query Frame = 0
Query:    4 SKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            S +   N+ +  WA+A     Y  NR P R     TPYEKW G  P +EH  +FGC AY
Sbjct:  590 SMLHARNLPKGLWAEAVHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAY 648          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V1GWK2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GWK2_9BILA)

HSP 1 Score: 58.5 bits (140), Expect = 1.050e-6
Identity = 25/59 (42.37%), Postives = 30/59 (50.85%), Query Frame = 0
Query:    4 SKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            S +   N+ R  WA+A     Y  N  P R     TPYEKW G  P +EH  +FGC AY
Sbjct:  384 SMLHARNLPRCLWAEAVHTAAYLLNHIPNRKETTNTPYEKWFGKRPTVEHLRIFGCDAY 442          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V0T4J8_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella murrelli TaxID=144512 RepID=A0A0V0T4J8_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-6
Identity = 25/59 (42.37%), Postives = 30/59 (50.85%), Query Frame = 0
Query:    4 SKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            S +   N+ R  WA A     +  NR P R     TPYEKW G  P +EH  +FGC AY
Sbjct:   80 SMLHARNLPRCLWADAVHTAAFLLNRIPNRKETTKTPYEKWFGKRPTVEHLQIFGCDAY 138          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A151I891_9HYME (Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I891_9HYME)

HSP 1 Score: 52.8 bits (125), Expect = 7.150e-5
Identity = 24/62 (38.71%), Postives = 33/62 (53.23%), Query Frame = 0
Query:    1 MTPSKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAY 62
            M    +I + +  +YW +A     Y  NR  TR   G TP+E+W+G  P L+H H FG  AY
Sbjct:  184 MARCMLIESGLANKYWGEAVSTANYLQNRLYTRA-TGTTPFERWYGKKPSLQHVHTFGSIAY 244          
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: UPI000CD9F0F6 (uncharacterized protein LOC111898272 n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9F0F6)

HSP 1 Score: 53.1 bits (126), Expect = 7.610e-5
Identity = 21/54 (38.89%), Postives = 29/54 (53.70%), Query Frame = 0
Query:   16 WAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKLEHFHVFGCTAYGMFQSGE 69
            W +A   +VY  NR  T+     TPYEKW G  P ++H  +FGC A+     G+
Sbjct:  512 WGEAVTHSVYILNRVHTKALKNATPYEKWTGRKPHVDHLRIFGCVAHMKVAKGQ 565          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A0V0ZTL5_9BILA1.830e-747.27Retrovirus-related Pol polyprotein from transposon... [more]
UPI0016531AD12.720e-744.26uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A0V1GQ65_9BILA3.980e-744.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A182GK47_AEDAL4.450e-741.94Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A0V1M2B3_9BILA4.780e-744.07Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1MB43_9BILA9.080e-742.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1GWK2_9BILA1.050e-642.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V0T4J8_9BILA1.210e-642.37Retrovirus-related Pol polyprotein from transposon... [more]
A0A151I891_9HYME7.150e-538.71Copia protein n=1 Tax=Cyphomyrmex costatus TaxID=4... [more]
UPI000CD9F0F67.610e-538.89uncharacterized protein LOC111898272 n=1 Tax=Lactu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12450contigH-paniculata_contig12450:4421..5244 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12450.1537.1mRNA_H-paniculata_contig12450.1537.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig12450 3920..6282 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig12450.1537.1 ID=prot_H-paniculata_contig12450.1537.1|Name=mRNA_H-paniculata_contig12450.1537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MTPSKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPK
LEHFHVFGCTAYGMFQSGERGDVSNTEKTTSASPAASANPYSALSDDDNH
GDSDDSEVNHAEPEAEDTSSAETFASTFLRETRTESGTKERRWRDRSPIQ
IRARARENREEDSGATARVAKAEDTSNPSGYLRRSQNLRQKH*
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