mRNA_H-paniculata_contig12450.1537.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A445HPU2_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445HPU2_GLYSO) HSP 1 Score: 177 bits (448), Expect = 8.850e-43 Identity = 111/307 (36.16%), Postives = 170/307 (55.37%), Query Frame = 2 Query: 1124 MEGVGEKRTWESED--PGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF---------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVI-ARRREKVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAVHQAAR 1954 M+ + + TW+ D PG P+G KMI F+RK+K DG+V ++KARLV QG Q EG DFF T APVAR+ST+R + +LAA H +DV A LN ++EE++ Q+ + W+ ++ ++ G + D CLY D G+ +++ +YV+D++I +++VDE K +S +F MKD G +L I+I+ R N I+ISQ YI ++L+++ F +C V P++ +K+L K + EY +GSLMYA+ TRPDIAYAV + +R Sbjct: 561 MDSIMQNNTWKLVDLPPGCKPLGCKMI-----FRRKMKVDGTVDKYKARLVIQGFRQKEGIDFFDTYAPVARISTIRLLLALAAIHNLMIHQMDVKTAFLNGELDEEIYMKQPEGFVMPGNENKVCKLMKSLYGLKQAPKQWHQKFDEVVLSSGFVINQADKCLYSKFDTHGK-GVIICLYVDDMLIFGTDQDQVDETKAFLSSKFDMKDMGEADVILGIKIK--RGNNGISISQSHYIEKILEKFNFKDCSPVSTPIDPNLKLLPNKGVA---VSQLEYSRAIGSLMYAMISTRPDIAYAVAKLSR 856
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: C6JRI2_SORBI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sorghum bicolor TaxID=4558 RepID=C6JRI2_SORBI) HSP 1 Score: 174 bits (442), Expect = 9.020e-43 Identity = 100/305 (32.79%), Postives = 160/305 (52.46%), Query Frame = 2 Query: 1124 MEGVGEKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF---------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRREKV-DEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAVHQAAR 1954 M+ + TWE D P G K + K FK+KL+ DG++ ++KARLVA+G +Q EGED+F T +PVAR++T+R + SLAA HGF +DV A LN +EEE++ Q+ + W+ + L G + D C+Y+ GG +++ +YV+D++I KV E K +S F MKD G ++ I++ + NG + + Q Y+ +VL R+G+ EC P + +++ + + R Y ++GSLMY + TRPDI++AV + +R Sbjct: 209 MDSIMSNGTWEVVD---RPFGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDYFDTYSPVARLTTIRVLLSLAASHGFLIHQMDVKTAFLNGELEEEIYMDQPDGFIANGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRF--GGGDGVILCLYVDDILIFGNNLKVIKEVKEFLSNNFEMKDLGEADVIVNIKLSREEGNGWVTLMQSHYVEKVLNRFGYSECTPAPTPYDPSVRL---RKNHRIARDQLRYSQIIGSLMYLASATRPDISFAVSKLSR 505
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 177 bits (448), Expect = 9.780e-43 Identity = 109/306 (35.62%), Postives = 164/306 (53.59%), Query Frame = 2 Query: 1124 MEGVGEKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRREKV-DEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKIL---HPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAVHQAAR 1954 ++G+G TWE +D LP R + K F+RK ++G VV++KARLVAQG SQ+ G DF +T APV R+ ++R + +LA + +E +DV A LN ++EE++ QSGR WN L+ L +G +R DPC+Y + GE I + V+V+DL++ K+ +E K ++ F + D G +++ IEI DR G I ISQ YI +LKRY + V +P++ + + + R++ Y MVGSLMYA GTRPDI+YAV ++ Sbjct: 933 LQGMG---TWELQD---LPKDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKLHRELTELGYKRLEADPCVYLWERKEGEVQI-ITVWVDDLLLFTNSPKLMEELKRDLQDLFEVTDLGEPQKIVGIEIERDREAGKIQISQQHYIESILKRYQLENANAVGMPLDPNVAFTAEDENEEADDRLAGG--YASMVGSLMYAAVGTRPDISYAVQTLSK 1229
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A177U3B2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177U3B2_9BASI) HSP 1 Score: 172 bits (436), Expect = 1.050e-42 Identity = 110/301 (36.54%), Postives = 158/301 (52.49%), Query Frame = 2 Query: 1139 EKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRREK-VDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHS-FEYRDMVGSLMYALTGTRPDIAYAVHQAARRM 1960 E RTWE P P GRK+I + +K K +G +R K+RLVAQG SQVEG D+ +T APVAR+S LR + +LA + G +DV A LN ++ +L+ QSGR W + L D ++ G + T+PCL+F E G I+++VYV+D+ IA E+ V E K + F+M D G L+ +L I I +SQ GY+ ++L+RYG +C+ P+ MK L P+ S E+ +VG L++ GTRPDIA+ V + AR M Sbjct: 49 EMRTWELAHP---PQGRKLIGCRWVYKVKTDPEGRAIRKKSRLVAQGFSQVEGIDYDETFAPVARLSALRMMVTLAIQLGLAMHGMDVKTAYLNGELDVDLYMKQPPGYDDGLGRACKLLRTLYGLKQSGRYWYHKLRDRVLEAGFTQLKTEPCLFFRWTESGP--IIILVYVDDVAIAAPTEEMVAEIKRQFTTWFKMTDNGPLTSMLGIRIHRSTCGRVATMSQSGYVSQILQRYGMADCKPAKTPMADAMKNLGPRVGSMATEKERHEFAALVGCLLWLAQGTRPDIAFQVGKLARFM 344
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT) HSP 1 Score: 173 bits (438), Expect = 2.040e-42 Identity = 104/306 (33.99%), Postives = 168/306 (54.90%), Query Frame = 2 Query: 1124 MEGVGEKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF---------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVV-VYVNDLVIARRR-EKVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAVHQAAR 1954 M+ + E WE + LP RK + K FK K DGS+ RHKARLVAQG SQ G D+ +T +PV R ++RTV +L+ + G + +DV AA LN +E+E++ QS R WN+ L++ L IG ++ +DPC+Y ++G NI VV ++V+D+++A + EK+ + K +I+ RF++KD G L +L +++ + + + I Q Y ++K+YG + C+ V PV+ K++ S + E++ VGSL+Y + TRPDI +AV+ A+ Sbjct: 169 MDSLQEHDVWELTE---LPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKEEDG---NIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQE--DAKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKE-EHQSAVGSLLYLSSATRPDITFAVNNVAK 465
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: Q45W64_PHACR (Polyprotein n=1 Tax=Phanerochaete chrysosporium (strain RP-78 / ATCC MYA-4764 / FGSC 9002) TaxID=273507 RepID=Q45W64_PHACR) HSP 1 Score: 175 bits (444), Expect = 3.030e-42 Identity = 107/290 (36.90%), Postives = 162/290 (55.86%), Query Frame = 2 Query: 1148 TWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGI-GLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRREKVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAV 1939 TW+ G LP GRK I +K F K +DGS+ ++KARLVAQG SQ+ G+D+F T +PV R T R +LAA + + +D+ A L+ P+EEE++ Q+GR WN+ LN L + G RS DPCLYF + G+ N + +V+V+D + R +D FK ++++ F + G+LS + +++ R+NG I+I Q Y+ +L+R+G +C+ V P++ +K L P + + Y +GSLMYA TGTRPDIA+AV Sbjct: 863 TWKK---GELPPGRKAIGSKWVFAIKRHQDGSIDKYKARLVAQGFSQIAGQDYFDTFSPVVRQETFRVATALAATENLDSDALDIVGAYLHGPLEEEIYMRQAPGYDDGSGQVYVLIKALYGLKQAGRVWNHLLNHVLTSLMGWTRSEADPCLYFKHE--GKLN-MALVHVDDTALYGERSILDRFKADVAKHFAITTNGTLSSFVGLQV--TRKNGAISILQTRYLETILERFGMQDCKPVSTPLDPGVK-LEPTPEDQTPA-DVPYAAAIGSLMYAATGTRPDIAFAV 1142
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 173 bits (438), Expect = 1.900e-41 Identity = 107/287 (37.28%), Postives = 158/287 (55.05%), Query Frame = 2 Query: 1175 LPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARR-REKVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKIL------HPKSSSRRISH-SFEYRDMVGSLMYALTGTRPDIAYA 1936 +P G K I +K K K +G++ R+K R+VA+G +Q EG D+ + APVA + ++R + +LAA+H E + +DV A LN + E+L+ Q+GR WN T + L +G R + CLY R EGG+ LVV YV+DL++A R +DE K ++ F+M+D G S VL I+IR DRR I +SQ YI VLKR G ++C+ V P+ + ++ + + I++ + Y +VGSLMYA+ GTRPDIAYA Sbjct: 1040 IPEGVKPITSKIVPKIKFDANGNIERYKIRIVARGFTQREGVDYQEVFAPVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYLLPPDGVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLVV-YVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYA 1325
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A0V1HEM8_TRIPS (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Trichinella pseudospiralis TaxID=6337 RepID=A0A0V1HEM8_TRIPS) HSP 1 Score: 169 bits (428), Expect = 2.070e-41 Identity = 106/273 (38.83%), Postives = 154/273 (56.41%), Query Frame = 2 Query: 1139 EKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRREKV-DEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKM---KILHPKSSSR-RISHSFEYRDMVGSLMYALTGTRPDIAYAV 1939 E ++WE P LP +K+I +K FK K KEDG++ + KARLVA+G SQ++G D+ T AP S+LR + SLAA++ E + +DV A LN + EE++ ++ R W L+D L GL R +PC+YF R + + V VYV+DL+I E +E K + +RF++KD G L I I D NGT +I Q YI E+L R+ +C+GV P++ K + P+S + H+ YR VG L+Y RPDI + V Sbjct: 180 ENQSWE---PAVLPPHKKVIKSKWVFKTKYKEDGTIEKRKARLVARGYSQLQGIDYEGTFAPTLGYSSLRYLLSLAAKNNLEVDQMDVVTAFLNLSLNEEIYREASRAWYGELDDTLRSFGLNRLKKEPCIYFLRKN--KIFLAVGVYVDDLLILSNNESAKNELKIALCKRFKIKDLGKAHWCLGIRIVQDVENGTQSIDQEQYIEEMLHRFKMSDCKGVKTPLDPNQVLSKAMMPRSDEETKQMHAVPYRVAVGCLVYLSQSCRPDICHTV 447
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: A0A067T5Q4_GALM3 (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067T5Q4_GALM3) HSP 1 Score: 172 bits (437), Expect = 2.230e-41 Identity = 106/303 (34.98%), Postives = 158/303 (52.15%), Query Frame = 2 Query: 1148 TWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVI-ARRREKVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSS--------RRISHSFEYRDMVGSLMYALTGTRPDIAYAVHQAAR 1954 TWE +D LP RK I + F RK E+G ++R+KARLVAQG SQ+ G DF T APV R +LR + ++AA E + +DV A LN + EE+F QSGR WN L+ L + +S D C+Y R E G T+ + V+V+DL+I + ++++E K + + F + D G ++ +E++ DR+ TI++ Q Y+ +LK+YG + CR V P++ + + + R Y VGSLMYA GTRPDIAYAV + ++ Sbjct: 759 TWELDD---LPPERKAIGCRWVFLRKYNENGEIIRYKARLVAQGFSQIPGMDFDGTFAPVMRHDSLRALLAIAAIKNLEIQQLDVKGAYLNGDLREEIFMRQPDGFHDGTSKVCRLKKTLYGLKQSGREWNRKLDKVLTELRFSKSNVDHCVYI-RTENGHTSY-ITVWVDDLMIFTDKSDEMNEIKAYLKKEFEISDLGEPKLIIGLEVKRDRKKHTISLGQTSYVDRILKKYGMENCRPVSTPMDPNVVLTRVNENDVKDEPREDRDERLGGRYAAAVGSLMYAAIGTRPDIAYAVQKLSK 1056
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Match: J9KJ72_ACYPI (Integrase catalytic domain-containing protein n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=J9KJ72_ACYPI) HSP 1 Score: 172 bits (436), Expect = 3.040e-41 Identity = 96/299 (32.11%), Postives = 165/299 (55.18%), Query Frame = 2 Query: 1124 MEGVGEKRTWESEDPGRLPVGRKMIYTKCTFKRKLKEDGSVVRHKARLVAQGSSQVEGEDFFKTNAPVARMSTLRTVFSLAAEHGFEFEDVDVDAACLNAPVEEELF-------------------------QSGRNWNNTLNDFLVGIGLQRSTTDPCLYFSRDEGGETNILVVVYVNDLVIARRRE-KVDEFKHNISRRFRMKD*GSLSRVLRIEIRHDRRNGTIAISQGGYIREVLKRYGFDECRGVLIPVEGKMKILHPKSSSRRISHSFEYRDMVGSLMYALTGTRPDIAYAVH 1942 ++ + + TW LP GRK++ TK FK K GSV ++KARLVAQG SQ EG D++ T +PVA+++TLRT+ ++A + + + +DV A L + E+++ Q+ + W+ ++++ +GL++S +D CLY + I +++YV+D++IA K+ E K + F M+D G L+ L ++I +D+ G + I+Q Y+ +VLK++ D C + P+E K+ I + + YR +VGSLMYA+ G+RPD++YA++ Sbjct: 794 IDSLKKNNTWTLS---HLPKGRKVVGTKWVFKIKRDSIGSVKKYKARLVAQGFSQKEGVDYYDTYSPVAKLTTLRTLLAIAVQRNWFLQQLDVKTAFLYGILTEDIYIEQPEGLNYNSDMIFKLNKSLYGLKQASKCWHERFDNYIAKLGLEQSDSDQCLYILNNNNTHDIIYLLLYVDDIIIAGSNMLKIGEIKSYLKEEFEMEDNGDLNYFLGLKINYDKTVGKLYINQTQYLEDVLKKFNMDNCNTISTPIESKLNI----EEDNKQECNQPYRQLVGSLMYAMLGSRPDLSYALN 1085 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12450.1537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12450.1537.1 >prot_H-paniculata_contig12450.1537.1 ID=prot_H-paniculata_contig12450.1537.1|Name=mRNA_H-paniculata_contig12450.1537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp MTPSKMITTNMGRRYWAKAARGTVYCFNRAPTRPHNGGTPYEKWHGTTPKback to top mRNA from alignment at H-paniculata_contig12450:3920..6282+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12450.1537.1 ID=mRNA_H-paniculata_contig12450.1537.1|Name=mRNA_H-paniculata_contig12450.1537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2363bp|location=Sequence derived from alignment at H-paniculata_contig12450:3920..6282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12450:3920..6282+ >mRNA_H-paniculata_contig12450.1537.1 ID=mRNA_H-paniculata_contig12450.1537.1|Name=mRNA_H-paniculata_contig12450.1537.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig12450:3920..6282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |