mRNA_H-paniculata_contig72700.15242.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig72700.15242.1
Unique NamemRNA_H-paniculata_contig72700.15242.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A2K3JST4_TRIPR (Uncharacterized protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JST4_TRIPR)

HSP 1 Score: 82.4 bits (202), Expect = 2.950e-18
Identity = 43/98 (43.88%), Postives = 63/98 (64.29%), Query Frame = 1
Query:   34 DADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQ------------SKGSSA----HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGL 279
            D+D+A D++DRKST+GYVF + G  +SW SKKQ             +  S A    H R KHI+VR+H +R+ ++EG++ L Y ++ +Q+ADILTK L
Sbjct:    2 DSDYAGDLDDRKSTSGYVFLLSGAAVSWSSKKQPVVTLSTTEAEFIAAASCACQVLHGRSKHIDVRFHFLRDLTKEGVVELSYCKSDEQIADILTKPL 99          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 87.8 bits (216), Expect = 3.720e-18
Identity = 50/138 (36.23%), Postives = 65/138 (47.10%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKGSSA---------------------------------------------------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGL 279
            L G+VDADWA DV DR+S +GY F + GG +SW SKKQ +   S+                                                   H R KHI+VR+H +RE  + G + L+YV TGDQ+AD+LTKGL
Sbjct:  983 LTGYVDADWAGDVNDRRSISGYTFLLAGGAVSWSSKKQNTTALSSTEAEYIAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGL 1120          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: UPI001BE4CD41 (secreted RxLR effector protein 161-like n=1 Tax=Anopheles merus TaxID=30066 RepID=UPI001BE4CD41)

HSP 1 Score: 83.6 bits (205), Expect = 6.620e-18
Identity = 51/139 (36.69%), Postives = 67/139 (48.20%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKG-----------SSAHC----------------------------------------RIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLS 282
            LE F DADWA D+ DR+S TGYVF V GG +SW +KKQ +             S+A C                                        R+KH++VR   IRE  Q G +A++YV TG+Q+AD++TKGLS
Sbjct:   42 LEAFADADWANDLVDRRSITGYVFRVCGGAVSWLTKKQSTISLSSTEAELVALSTAVCHGVWLVRLLKELSMEPEGPVVYYEDNQSTIRVVEEERDTARLKHVDVRHRFIREEIQRGRVAVRYVPTGEQVADMMTKGLS 180          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: H3H839_PHYRM (Integrase catalytic domain-containing protein n=4 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H839_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 9.380e-18
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 1
Query:   16 GLEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQS------------------------------------KGSSA-------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLSRV 288
            GL+G+ DADWA D+E R+ST+GY F + GG ISW SKKQ++                                    +GS A       H R KHI++R+H +RE  ++G + L+YV T D LAD++TK ++ V
Sbjct:  781 GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEALGEMASDEAVNIYEDHQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAV 914          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A2Z6NN11_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NN11_TRISU)

HSP 1 Score: 86.7 bits (213), Expect = 9.440e-18
Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQ-------------------SKGSSAHCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLS 282
            L G+ D++W  DVEDRKST GY+F      ISWCSKK+                    +K   AH R KHIE+R+H +RE    G L L+Y ++G+Q+AD+ TK ++
Sbjct:  976 LMGYTDSNWCGDVEDRKSTAGYIFYFGEAPISWCSKKEPVVVLSSFTLKVDNVSAINLAKNPIAHGRSKHIEMRFHYLREQVNNGNLTLEYCKSGEQVADLFTKAVA 1082          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A182G3D4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G3D4_AEDAL)

HSP 1 Score: 83.2 bits (204), Expect = 1.240e-17
Identity = 48/141 (34.04%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKG-SSAHC--------------------------------------------------RIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLSRV 288
            LEGF DADWA D+ DRKS +GYVF+V+G  +SWC++KQ S   SSA                                                    R+KH++VR+H ++     G + L YV + DQ+AD++TKGL R+
Sbjct:   59 LEGFADADWAGDIVDRKSLSGYVFKVRGATVSWCTRKQVSVALSSAEAEYASLTMAVTEAIWLRGLLRDLGQRVADPTIIHEDNQACIRVAESDKPTRRMKHVDVRFHFVKNEIDAGTVRLLYVPSEDQVADVMTKGLPRI 199          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A4Y9ZSL8_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZSL8_9AGAM)

HSP 1 Score: 84.7 bits (208), Expect = 1.840e-17
Identity = 49/138 (35.51%), Postives = 64/138 (46.38%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKGSSA---------------------------------------------------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGL 279
            L G+VDADWA DV DR+S +GY F + GG ISW SKKQ +   S+                                                   H R KHI++R+H +RE  + G + L+YV TGDQ+AD+L KGL
Sbjct:  177 LTGYVDADWAGDVNDRRSISGYTFLLAGGAISWSSKKQNTTALSSTEAEYIVATHAAKEATWLRTFLSKIGRPCKAATLLLMDNQSAMAIAWNPAFHARTKHIDMRYHFLREKVEAGAINLQYVPTGDQVADVLMKGL 314          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: H3G5T8_PHYRM (Uncharacterized protein n=5 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5T8_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 2.360e-17
Identity = 48/140 (34.29%), Postives = 68/140 (48.57%), Query Frame = 1
Query:   16 GLEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQS---------------------------------------------KGSSA-------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGL 279
            GL+G+ DADWA D+E R+ST+GY F + GG ISW SKKQ++                                             +GS A       H R KHI++R+H +RE  ++G + L+YV T D LAD++TK +
Sbjct:   24 GLQGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAI 163          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 85.5 bits (210), Expect = 2.420e-17
Identity = 49/140 (35.00%), Postives = 65/140 (46.43%), Query Frame = 1
Query:   19 LEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKGSSA---------------------------------------------------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLSR 285
            L G+VD+DWA D  DR+S +GYVF + G  ISW SKKQQS   S+                                                   H   KHI+VR H +R+  ++G +A +Y+ T DQ+AD+LTKGLSR
Sbjct: 1253 LTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSR 1392          
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Match: A0A4Y9YHS6_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Dentipellis fragilis TaxID=205917 RepID=A0A4Y9YHS6_9AGAM)

HSP 1 Score: 85.5 bits (210), Expect = 2.420e-17
Identity = 53/145 (36.55%), Postives = 66/145 (45.52%), Query Frame = 1
Query:    4 SNGHGLEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKGSSA---------------------------------------------------HCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLSR 285
            S G  L  + DADWA DV DR+S +GYVF +    +SW SKKQ S   S+                                                   H R KHI+VR H +RE  +EGIL L+YV TG+Q+AD+LTKGL R
Sbjct: 1268 SKGSELTCYTDADWASDVNDRRSISGYVFMMCRAAVSWSSKKQPSTALSSTEAEYIAGAHAAKEAIWMRGFLAELWQPRSGPTILLMDNQSAMAIARNPAFHARTKHIDVRHHFLREKVEEGILDLEYVPTGEQVADVLTKGLPR 1412          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig72700.15242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3JST4_TRIPR2.950e-1843.88Uncharacterized protein (Fragment) n=1 Tax=Trifoli... [more]
A0A4Y9ZY34_9AGAM3.720e-1836.23Integrase catalytic domain-containing protein n=1 ... [more]
UPI001BE4CD416.620e-1836.69secreted RxLR effector protein 161-like n=1 Tax=An... [more]
H3H839_PHYRM9.380e-1836.57Integrase catalytic domain-containing protein n=4 ... [more]
A0A2Z6NN11_TRISU9.440e-1841.12Integrase catalytic domain-containing protein n=1 ... [more]
A0A182G3D4_AEDAL1.240e-1734.04Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A4Y9ZSL8_9AGAM1.840e-1735.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3G5T8_PHYRM2.360e-1734.29Uncharacterized protein n=5 Tax=Phytophthora ramor... [more]
A0A4Y9ZJA2_9AGAM2.420e-1735.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y9YHS6_9AGAM2.420e-1736.55Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig72700contigH-paniculata_contig72700:26..316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog3750.XP_008370919.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3894V@33090,3GY0Z@35493,COG2801@1,KOG0017@2759
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930886.4546154-CDS-H-paniculata_contig72700:25..3161622930886.4546154-CDS-H-paniculata_contig72700:25..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72700 26..316 +
1691481496.6569974-CDS-H-paniculata_contig72700:25..3161691481496.6569974-CDS-H-paniculata_contig72700:25..316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig72700 26..316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig72700.15242.1prot_H-paniculata_contig72700.15242.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig72700 26..316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig72700.15242.1

>prot_H-paniculata_contig72700.15242.1 ID=prot_H-paniculata_contig72700.15242.1|Name=mRNA_H-paniculata_contig72700.15242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
KSNGHGLEGFVDADWAEDVEDRKSTTGYVFEVKGGVISWCSKKQQSKGSS
AHCRIKHIEVRWHGIREWSQEGILALKYVQTGDQLADILTKGLSRV*
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mRNA from alignment at H-paniculata_contig72700:26..316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig72700.15242.1 ID=mRNA_H-paniculata_contig72700.15242.1|Name=mRNA_H-paniculata_contig72700.15242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig72700:26..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGA AGATGTCGAGGACCGAAAGTCCACGACAGGATACGTTTTCGAGGTGAAGG GTGGTGTGATAAGTTGGTGCTCCAAAAAGCAACAGAGTAAGGGATCTAGC GCACACTGCAGGATAAAGCACATCGAAGTGCGCTGGCACGGAATTCGAGA GTGGAGTCAGGAAGGAATATTGGCATTGAAATACGTGCAGACCGGCGATC AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig72700:26..316+

>mRNA_H-paniculata_contig72700.15242.1 ID=mRNA_H-paniculata_contig72700.15242.1|Name=mRNA_H-paniculata_contig72700.15242.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig72700:26..316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGTAATGGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGA
AGATGTCGAGGACCGAAAGTCCACGACAGGATACGTTTTCGAGGTGAAGG
GTGGTGTGATAAGTTGGTGCTCCAAAAAGCAACAGAGTAAGGGATCTAGC
GCACACTGCAGGATAAAGCACATCGAAGTGCGCTGGCACGGAATTCGAGA
GTGGAGTCAGGAAGGAATATTGGCATTGAAATACGTGCAGACCGGCGATC
AACTTGCTGACATTTTAACGAAAGGACTAAGCAGAGTATAGAAGAGTAAT
GGTCACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGA
GGACCGAAAGTCCACGACAGGATACGTTTTCGAGGTGAAGGGTGGTGTGA
TAAGTTGGTGCTCCAAAAAGCAACAGAGTAAGGGATCTAGCGCACACTGC
AGGATAAAGCACATCGAAGTGCGCTGGCACGGAATTCGAGAGTGGAGTCA
GGAAGGAATATTGGCATTGAAATACGTGCAGACCGGCGATCAACTTGCTG
ACATTTTAACGAAAGGACTAAGCAGAGTATAG
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