mRNA_H-paniculata_contig12412.1518.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 118 bits (296), Expect = 3.210e-27 Identity = 74/169 (43.79%), Postives = 93/169 (55.03%), Query Frame = 2 Query: 131 GKMSALRQDAVEVAVRTTAASTVLSQLND-TLACAYLVL*QSARDDSDAEDEGHGTHPKKQRRVYVRSPYSESAWARMLQSLD------LTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLMS 616 G MS+ AV V + A +Q TL LVL D D+E+E K+RRVY R Y+ S WA LQ L + DP SR ARRFR F +PYPF VEL+ +V++ WFP G D +GRR +P++LKVLA LQIL RGN F DI +S +S Sbjct: 16 GTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAWDLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPT--GKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFIS 182
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 6.060e-25 Identity = 72/158 (45.57%), Postives = 97/158 (61.39%), Query Frame = 2 Query: 161 VEVAVRTTAASTV-LSQLNDTLACAYLVL*QSARDDS--DAEDEGHGTHPKKQRRVYVRSPYSESAWARMLQSL---DLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLMS 616 V A TTA +T L QL ++A + V+ + DD D ED+ + K+RRVYVR Y++S W + L L TD +R+ARRFR+ F +PYPF V L+++V++ WFP G DV GR+ VP+ELKVLA LQIL RGN F DI +S +S Sbjct: 45 VPAAFATTAVATASLQQLQRSVA-VWDVIMEDFEDDLELDTEDD-EASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT--GESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFIS 198
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.790e-18 Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 2 Query: 260 DDSDAEDEGHGTHPKKQRRVYVRSPYSESAWARMLQSLDLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLMSERV 625 +DS+ E+E G K+ RRV R + SAW LQ +DL D + A+ FR F +PYPF EL+K+ + +WF G D A R +PLELKVL +GN FDD+ QLS MSE + Sbjct: 46 EDSEDEEEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSP--GEKDAANREGIPLELKVLG------KGNCFDDVEQLSKMSESI 159
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5KYT9_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYT9_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 3.670e-18 Identity = 58/135 (42.96%), Postives = 81/135 (60.00%), Query Frame = 2 Query: 161 VEVAVRTTAASTV-LSQLNDTLACAYLVL*QSARDDS--DAEDEGHGTHPKKQRRVYVRSPYSESAWARMLQSL---DLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKV 547 V A TTA +T L QL ++A + V+ + DD D ED+ + K+RRVYVR Y++S W + L L TD +R+ARRFR+ F +PYPF V L+++V++ WFP G DV GR+ VP+ELKV Sbjct: 13 VPAAFATTAVATASLQQLQRSVA-VWDVIMEDFEDDLELDTEDD-EASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT--GESDVTGRQAVPVELKV 143
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5JP98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP98_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 6.300e-17 Identity = 56/147 (38.10%), Postives = 86/147 (58.50%), Query Frame = 2 Query: 197 VLSQLNDTLACAYLVL*QSARDDSDAEDEGHGTHPKKQRRVYVRSPYSESAW--ARMLQSLDLT-DPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGR---RMVPLELKVLASLQILERGNSFDDIGQLSLMSE 619 VLS L +L S R E++G P+ +RR+ VR P ++ A AR+L+ DL DP++R+A++FR F +PYPF + L+ V+ G+W ++ GR R +P+E+KVLA L+IL RGN FDD+ +++ M E Sbjct: 13 VLSLAFAALHYQQQLLVASLRQMRREEEDGCDGEPRPKRRLTVR-PRADYALPRARVLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGKWPVFTTDEFELGGRGTRRCIPVEIKVLAVLRILGRGNYFDDVSEVTGMGE 158
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5K671_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K671_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.090e-16 Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 2 Query: 161 VEVAVRTTAASTV-LSQLNDTLACAYLVL*QSARDDS--DAEDEGHGTHPKKQRRVYVRSPYSESAWARMLQSL---DLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASLQILERGNSFDDIGQLSLM----SERVDCPKC 640 V A TTA +T L QL ++A + V+ + DD D ED+ + K+RRVYVR Y++S W + L L TD +R+ARRFR+ F +PYPF V L+++V++ WFP G DV GR+ VP+ELK+ + RG + + +S R CP C Sbjct: 262 VPAAFATTAVATASLQQLQRSVA-VWDVIMEDFEDDLELDTEDD-EASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPT--GESDVTGRQAVPVELKIERT-----RGGVKEIVSGISFPPPAPESRRSCPHC 422
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE) HSP 1 Score: 83.6 bits (205), Expect = 7.370e-15 Identity = 49/112 (43.75%), Postives = 65/112 (58.04%), Query Frame = 2 Query: 302 KKQRRVYVRSPYSESAWARMLQSLD--LTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRM---VPLELKVLASLQILERGNSFDDIGQLSLMSER 622 K++R VY R Y SAWA ML+ + L DP ++DAR FR F +PYP +EL+K ++ W D+ GR +P+ELKVL RGN FDDI QLS +SE+ Sbjct: 53 KRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVLG------RGNFFDDIPQLSFISEQ 158
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A835ZAS0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAS0_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.210e-14 Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 302 KKQRRVYVRSPYSESAWARMLQS-LDLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASL 559 K+ RRVY R Y +AW ML + L DP SR+A++FR F +PYP EL+ +V+E W P + DVAGR +PLELKV +L Sbjct: 36 KRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADA--DVAGRPCIPLELKVHCTL 120
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A835ZBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP5_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.590e-12 Identity = 40/84 (47.62%), Postives = 52/84 (61.90%), Query Frame = 2 Query: 302 KKQRRVYVRSPYSESAWARMLQS-LDLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVL 550 K+ RRVY R Y +AW ML + L DP SR+A++FR F +PYP EL+ +V+E W P + DVAGR +PLELK L Sbjct: 100 KRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADA--DVAGRPCIPLELKPL 181
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Match: A0A835YZ80_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ80_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 3.290e-12 Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 302 KKQRRVYVRSPYSESAWARMLQS-LDLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDVAGRRMVPLELKVLASL 559 K+ RRVY R Y +AW ML + L DP SR+A++FR F +PYP EL+ +V+E W P + DVAGR +PLELKV +L Sbjct: 767 KRCRRVYERPDYRRTAWMTMLDNEAQLLDPTSREAKKFRRRFRLPYPMFKELVALVREKGWLPCADA--DVAGRPCIPLELKVHCTL 851 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12412.1518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12412.1518.1 >prot_H-paniculata_contig12412.1518.1 ID=prot_H-paniculata_contig12412.1518.1|Name=mRNA_H-paniculata_contig12412.1518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp MLQSLDLTDPNSRDARRFRSCFGIPYPFVVELIKVVQEGQWFPKREGHVDback to top mRNA from alignment at H-paniculata_contig12412:3973..5707- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12412.1518.1 ID=mRNA_H-paniculata_contig12412.1518.1|Name=mRNA_H-paniculata_contig12412.1518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1735bp|location=Sequence derived from alignment at H-paniculata_contig12412:3973..5707- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12412:3973..5707- >mRNA_H-paniculata_contig12412.1518.1 ID=mRNA_H-paniculata_contig12412.1518.1|Name=mRNA_H-paniculata_contig12412.1518.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig12412:3973..5707- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |