mRNA_H-paniculata_contig69852.14929.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig69852.14929.1
Unique NamemRNA_H-paniculata_contig69852.14929.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: D8LQ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ86_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 1.460e-38
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 QPDGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESE--TATQNFQILLV 225
            Q  GQLREATEIQNLQIGEGDVCRG+ IPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCF E+E  TATQNFQILLV
Sbjct:  163 QAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 239          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: A0A6H5KT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT71_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 6.910e-38
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 1
Query:    1 QPDGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESE--TATQNFQILLV 225
            Q  GQLREATEIQNLQIGEGDVCRG+ IPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCF E+E  TATQNFQILLV
Sbjct:  226 QAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 302          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: UPI000C6D5C96 (Down syndrome critical region protein 3-like n=1 Tax=Centruroides sculpturatus TaxID=218467 RepID=UPI000C6D5C96)

HSP 1 Score: 103 bits (256), Expect = 1.120e-25
Identity = 44/72 (61.11%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            +G  R+ATEIQN+QIGEGD+CRG+AIPIYMV PRLF+CPT++T  F++EFE+N++V F +    T+NF I L
Sbjct:  146 EGYSRDATEIQNIQIGEGDICRGIAIPIYMVFPRLFTCPTLITNNFKIEFEVNIVVVFEDDRLITENFPIRL 217          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: T1KHU9_TETUR (Uncharacterized protein n=1 Tax=Tetranychus urticae TaxID=32264 RepID=T1KHU9_TETUR)

HSP 1 Score: 103 bits (258), Expect = 2.830e-25
Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILLV 225
            +G  R+ATEIQN+QIG+GD+CRG+ IPIYM+ PRLFSCPT++T  F++EFE+NVIV F ++   T+NF I LV
Sbjct:  226 EGYARDATEIQNIQIGDGDICRGVPIPIYMIFPRLFSCPTLITSNFKIEFEVNVIVIFEDNHLITENFPIKLV 298          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: A0A8K1FJJ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJJ2_PYTOL)

HSP 1 Score: 103 bits (256), Expect = 5.200e-25
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            +G  R+ATEIQN+QIG GDVCR M+IPIYM+ PRLF+CPTM+TPRF+VEFE NV+V F +    T+NF I L
Sbjct:  223 EGVARDATEIQNVQIGWGDVCREMSIPIYMIFPRLFTCPTMLTPRFKVEFETNVVVLFEDGNMITENFPITL 294          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: UPI000BA8120E (Down syndrome critical region protein 3-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA8120E)

HSP 1 Score: 102 bits (253), Expect = 5.900e-25
Identity = 43/72 (59.72%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            +G  R+ATEIQN+QIGEGDVCRG+ IPIYM+ PRLF+CPT++T  F++EFE+N++V F +    T+NF I L
Sbjct:  175 EGYSRDATEIQNIQIGEGDVCRGIVIPIYMIFPRLFACPTLITSNFKIEFEVNIVVVFEDDHLITENFPIKL 246          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: A0A3S4QC84_9ACAR (Down syndrome critical region protein 3-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S4QC84_9ACAR)

HSP 1 Score: 102 bits (255), Expect = 7.420e-25
Identity = 44/73 (60.27%), Postives = 60/73 (82.19%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILLV 225
            +G  R+ATEIQN+QIGEGDVCRG+ IPIYMV PRLF+CPT++T  F++EFE+N++V F ++   T+NF I L+
Sbjct:  224 EGYARDATEIQNIQIGEGDVCRGVPIPIYMVFPRLFTCPTLITCNFKIEFEVNIVVIFEDNHLITENFPIKLI 296          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: UPI0005CEDDC2 (Down syndrome critical region protein 3 homolog isoform X1 n=2 Tax=Ceratosolen solmsi marchali TaxID=326594 RepID=UPI0005CEDDC2)

HSP 1 Score: 101 bits (252), Expect = 2.120e-24
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            DG  R+ATEIQN+QIGEG+VC G+AIPIYM+ PRLF+CPT++T  F+VEFE+N+IV F      T+NF I+L
Sbjct:  225 DGYSRDATEIQNIQIGEGNVCSGLAIPIYMIFPRLFTCPTLITSNFKVEFEVNLIVVFENDYLVTENFPIIL 296          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: A0A5D6XLT8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLT8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.380e-24
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            +G  R+ATEIQN+QIG GDVCR +AIPIYM+ PRLF+CPTM+ PRF+VEFE N++V F +    T+NF ++L
Sbjct:  195 EGVARDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAPRFKVEFEANIVVLFDDGNMITENFPLVL 266          
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Match: R7U226_CAPTE (Uncharacterized protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U226_CAPTE)

HSP 1 Score: 100 bits (250), Expect = 3.980e-24
Identity = 40/72 (55.56%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    7 DGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFVESETATQNFQILL 222
            +G  ++ATEIQN+Q+ +GDVCRGMAIPIYM+ PRLF+CPT+ T  F+VEFE+N+++ F +    T+NF + L
Sbjct:  222 EGYAKDATEIQNIQVADGDVCRGMAIPIYMIFPRLFTCPTLTTSNFKVEFEINIVIVFTDDHLVTENFPVTL 293          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69852.14929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ86_ECTSI1.460e-3889.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT71_9PHAE6.910e-3889.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000C6D5C961.120e-2561.11Down syndrome critical region protein 3-like n=1 T... [more]
T1KHU9_TETUR2.830e-2561.64Uncharacterized protein n=1 Tax=Tetranychus urtica... [more]
A0A8K1FJJ2_PYTOL5.200e-2565.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI000BA8120E5.900e-2559.72Down syndrome critical region protein 3-like n=1 T... [more]
A0A3S4QC84_9ACAR7.420e-2560.27Down syndrome critical region protein 3-like prote... [more]
UPI0005CEDDC22.120e-2462.50Down syndrome critical region protein 3 homolog is... [more]
A0A5D6XLT8_9STRA3.380e-2461.11Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
R7U226_CAPTE3.980e-2455.56Uncharacterized protein n=1 Tax=Capitella teleta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69852contigH-paniculata_contig69852:284..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue5.8e-30
Seed eggNOG ortholog2880.D8LQ86
Preferred nameDSCR3
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0030904,GO:0030906,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098796
EggNOG free text desc.protein transporter activity
EggNOG OGsKOG2717@1,KOG2717@2759
COG Functional cat.DT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size228
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.0539892-CDS-H-paniculata_contig69852:283..5111622930840.0539892-CDS-H-paniculata_contig69852:283..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69852 284..511 +
1691481475.9817457-CDS-H-paniculata_contig69852:283..5111691481475.9817457-CDS-H-paniculata_contig69852:283..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69852 284..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69852.14929.1prot_H-paniculata_contig69852.14929.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig69852 284..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig69852.14929.1

>prot_H-paniculata_contig69852.14929.1 ID=prot_H-paniculata_contig69852.14929.1|Name=mRNA_H-paniculata_contig69852.14929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
QPDGQLREATEIQNLQIGEGDVCRGMAIPIYMVLPRLFSCPTMVTPRFRV
EFELNVIVCFVESETATQNFQILLV*
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mRNA from alignment at H-paniculata_contig69852:284..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig69852.14929.1 ID=mRNA_H-paniculata_contig69852.14929.1|Name=mRNA_H-paniculata_contig69852.14929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=228bp|location=Sequence derived from alignment at H-paniculata_contig69852:284..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGACGGTCAATTGCGCGAGGCAACGGAGATCCAGAATTTGCAAAT TGGCGAGGGGGATGTGTGTCGGGGCATGGCGATTCCGATCTACATGGTTT TGCCCAGGCTTTTTTCCTGTCCCACGATGGTGACACCTCGCTTCCGGGTG GAGTTTGAGTTAAATGTGATCGTGTGTTTCGTGGAATCGGAAACCGCCAC GCAGAACTTCCAGATTTTATTGGTATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig69852:284..511+

>mRNA_H-paniculata_contig69852.14929.1 ID=mRNA_H-paniculata_contig69852.14929.1|Name=mRNA_H-paniculata_contig69852.14929.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig69852:284..511+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGACGGTCAATTGCGCGAGGCAACGGAGATCCAGAATTTGCAAAT
TGGCGAGGGGGATGTGTGTCGGGGCATGGCGATTCCGATCTACATGGTTT
TGCCCAGGCTTTTTTCCTGTCCCACGATGGTGACACCTCGCTTCCGGGTG
GAGTTTGAGTTAAATGTGATCGTGTGTTTCGTGGAATCGGAAACCGCCAC
GCAGAACTTCCAGATTTTATTGGTATGACAGCCGGACGGTCAATTGCGCG
AGGCAACGGAGATCCAGAATTTGCAAATTGGCGAGGGGGATGTGTGTCGG
GGCATGGCGATTCCGATCTACATGGTTTTGCCCAGGCTTTTTTCCTGTCC
CACGATGGTGACACCTCGCTTCCGGGTGGAGTTTGAGTTAAATGTGATCG
TGTGTTTCGTGGAATCGGAAACCGCCACGCAGAACTTCCAGATTTTATTG
GTATGA
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