mRNA_H-paniculata_contig6985.14928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6985.14928.1
Unique NamemRNA_H-paniculata_contig6985.14928.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA)

HSP 1 Score: 96.3 bits (238), Expect = 7.520e-21
Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 2
Query:   56 DIFVRKMAKQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
            D + R+  K + +ASY+PQQNGVAER  RS+ EM R  +  A + ++YW EA + AVY  N + T+P N  TPYE W+G  PK++HLR+FG
Sbjct:  117 DFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFG 206          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A6P6AH64_DURZI (uncharacterized protein LOC111309412 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AH64_DURZI)

HSP 1 Score: 94.0 bits (232), Expect = 3.870e-20
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query:   86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
            +++A+YTPQQNGV ER  R++ EM R  +   N+ +++W EA + +VY LNR  T+   G TP+E WYG+ P + HLRVFG+
Sbjct:  264 QLTATYTPQQNGVNERKNRTIMEMARCMLFEKNLSKKFWAEAVNTSVYLLNRLPTKALKGNTPFEAWYGSKPSVHHLRVFGS 345          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: W8APZ4_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8APZ4_CERCA)

HSP 1 Score: 90.9 bits (224), Expect = 5.790e-19
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGTR 334
            +++++A YTPQQNGVAER+ R++ EM RS ++ A M  R+W EA   AVY  NR+ T+     TPYE+W+G  P + H R FG++
Sbjct:  547 RRQLTAPYTPQQNGVAERANRTLVEMARSMLVHAKMNERFWAEAVKTAVYIRNRSATKSLVNTTPYEEWHGIKPTVAHFRTFGSK 631          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: W8AL23_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8AL23_CERCA)

HSP 1 Score: 90.9 bits (224), Expect = 5.980e-19
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query:   80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGTR 334
            +++++A YTPQQNGVAER+ R++ EM RS ++ A M  R+W EA   AVY  NR+ T+     TPYE+W+G  P + H R FG++
Sbjct:  547 RRQLTAPYTPQQNGVAERANRTLVEMARSMLVHAKMNERFWAEAVKTAVYIRNRSATKSLVNTTPYEEWHGIKPTVAHFRTFGSK 631          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A1J3ETN2_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ETN2_NOCCA)

HSP 1 Score: 83.6 bits (205), Expect = 8.600e-19
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 2
Query:   86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
            +++A+Y+PQQNGV+ER  RS+ EM R+ +   ++  ++W EA H A Y  NR  TR     TP E W GT P L+HL+VFG
Sbjct:    3 QLTATYSPQQNGVSERRNRSLVEMARAMIKAKDLPLKFWAEAVHTAAYIQNRIPTRALENKTPLEAWNGTKPSLNHLKVFG 83          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69)

HSP 1 Score: 89.0 bits (219), Expect = 2.850e-18
Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 2
Query:   86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
            +++ASYTPQQNGVAER  RS+ EM +S +   N+ + +W EA H A Y LNR+ T   +  TP+E W G  PK+ H ++FG
Sbjct:  702 QLTASYTPQQNGVAERKIRSLVEMAKSMLKAKNLPKSFWAEAIHTAAYILNRSSTSALSNQTPFEAWNGWKPKVKHFKIFG 782          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A6P5RP40_PRUAV (Non-specific serine/threonine protein kinase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RP40_PRUAV)

HSP 1 Score: 89.0 bits (219), Expect = 2.900e-18
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 2
Query:   56 DIFVRKMA-KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
            D F+ K   K +++A YTPQ+NGVAER  R++ +M R  +   N+ + +W EA   AVY LNRA +R  NG  PYE W G  P + HLRVFG
Sbjct: 1673 DEFLEKNGIKHQLTARYTPQENGVAERKNRTIMDMVRCMLKLKNLPKCFWAEAVACAVYILNRAPSRSVNGRIPYEVWSGRKPNIQHLRVFG 1764          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 88.6 bits (218), Expect = 3.870e-18
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
            K++++A+YTPQQNGVAER  RSV  MTR  ++  ++ R++W EA   AVY LNR+ ++  N  TP EKW    P ++HLR+FG+
Sbjct:  585 KRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGS 668          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A251RQU6_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RQU6_HELAN)

HSP 1 Score: 87.8 bits (216), Expect = 6.350e-18
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 2
Query:   86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
            +++ S+TPQQNGVAER  R++ E++RS M    +   YW EA   A Y LNR +T+     TPYE W G  P +DHLRVFG+
Sbjct:    7 QLTNSFTPQQNGVAERKNRTLMELSRSMMNVKQLPNCYWAEAIACATYILNRTITKTRPNQTPYEAWNGRKPNVDHLRVFGS 88          
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH)

HSP 1 Score: 87.8 bits (216), Expect = 7.070e-18
Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   56 DIFVRKMA-KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
            D F++K   K +++A YTPQQNGVAER  R++ +M R  +    + + +W EA   AVY LNR+ +R  +G TPYE W G  P + H+RVFG
Sbjct:  556 DDFLKKNGIKHQLTARYTPQQNGVAERKNRTIMDMVRCMLKFKGLPKYFWAEAVSCAVYILNRSPSRSIDGSTPYEVWSGHKPNIQHMRVFG 647          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2M4CK12_ANODA7.520e-2149.45Putative pol polyprotein (Fragment) n=1 Tax=Anophe... [more]
A0A6P6AH64_DURZI3.870e-2047.56uncharacterized protein LOC111309412 n=1 Tax=Durio... [more]
W8APZ4_CERCA5.790e-1947.06Retrovirus-related Pol polyprotein from transposon... [more]
W8AL23_CERCA5.980e-1947.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A1J3ETN2_NOCCA8.600e-1946.91Copia protein (Fragment) n=1 Tax=Noccaea caerulesc... [more]
UPI001CC6DD692.850e-1848.15uncharacterized protein LOC110630572 n=1 Tax=Manih... [more]
A0A6P5RP40_PRUAV2.900e-1847.83Non-specific serine/threonine protein kinase n=1 T... [more]
Q9C7Y1_ARATH3.870e-1848.81Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A251RQU6_HELAN6.350e-1848.78Putative ribonuclease H-like domain, Reverse trans... [more]
A0A2P6PN01_ROSCH7.070e-1845.65Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6985contigH-paniculata_contig6985:8354..8696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.5
Seed ortholog evalue4.3e-16
Seed eggNOG ortholog15368.BRADI2G01640.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size343
Cds size270
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.984978-CDS-H-paniculata_contig6985:8353..86231622930839.984978-CDS-H-paniculata_contig6985:8353..8623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6985 8354..8623 -
1691481475.9616017-CDS-H-paniculata_contig6985:8353..86231691481475.9616017-CDS-H-paniculata_contig6985:8353..8623Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6985 8354..8623 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930840.005562-UTR-H-paniculata_contig6985:8623..86961622930840.005562-UTR-H-paniculata_contig6985:8623..8696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6985 8624..8696 -
1691481475.9722872-UTR-H-paniculata_contig6985:8623..86961691481475.9722872-UTR-H-paniculata_contig6985:8623..8696Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6985 8624..8696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6985.14928.1prot_H-paniculata_contig6985.14928.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6985 8354..8623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6985.14928.1

>prot_H-paniculata_contig6985.14928.1 ID=prot_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
MAKQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAA
VYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGTRRT*
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mRNA from alignment at H-paniculata_contig6985:8354..8696-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6985.14928.1 ID=mRNA_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=343bp|location=Sequence derived from alignment at H-paniculata_contig6985:8354..8696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATAAAACGTCTTCGGTCAGATCAAGGAGGAGCGTTTACAGGAGAAGC GTTCCGACATTTTTGTGCGGAAAATGGCTAAGCAAGAAATTTCTGCCTCC TACACGCCGCAGCAAAATGGTGTGGCGGAGCGCAGCTGGCGTAGTGTTTT CGAGATGACCCGAAGTAAGATGATCACCGCCAACATGGGCCGCAGGTATT GGGTGGAGGCGGCACACGCGGCTGTGTACTGCTTAAATCGTGCCCTGACG CGACCGCACAACGGAGGGACACCATATGAGAAATGGTATGGTACGACACC AAAGCTTGACCACCTTCGTGTCTTCGGTACACGGCGTACGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig6985:8354..8696-

>mRNA_H-paniculata_contig6985.14928.1 ID=mRNA_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig6985:8354..8696- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAGCAAGAAATTTCTGCCTCCTACACGCCGCAGCAAAATGGTGT
GGCGGAGCGCAGCTGGCGTAGTGTTTTCGAGATGACCCGAAGTAAGATGA
TCACCGCCAACATGGGCCGCAGGTATTGGGTGGAGGCGGCACACGCGGCT
GTGTACTGCTTAAATCGTGCCCTGACGCGACCGCACAACGGAGGGACACC
ATATGAGAAATGGTATGGTACGACACCAAAGCTTGACCACCTTCGTGTCT
TCGGTACACGGCGTACGTGAATGGCTAAGCAAGAAATTTCTGCCTCCTAC
ACGCCGCAGCAAAATGGTGTGGCGGAGCGCAGCTGGCGTAGTGTTTTCGA
GATGACCCGAAGTAAGATGATCACCGCCAACATGGGCCGCAGGTATTGGG
TGGAGGCGGCACACGCGGCTGTGTACTGCTTAAATCGTGCCCTGACGCGA
CCGCACAACGGAGGGACACCATATGAGAAATGGTATGGTACGACACCAAA
GCTTGACCACCTTCGTGTCTTCGGTACACGGCGTACGTGA
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