mRNA_H-paniculata_contig6985.14928.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A2M4CK12_ANODA (Putative pol polyprotein (Fragment) n=1 Tax=Anopheles darlingi TaxID=43151 RepID=A0A2M4CK12_ANODA) HSP 1 Score: 96.3 bits (238), Expect = 7.520e-21 Identity = 45/91 (49.45%), Postives = 62/91 (68.13%), Query Frame = 2
Query: 56 DIFVRKMAKQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
D + R+ K + +ASY+PQQNGVAER RS+ EM R + A + ++YW EA + AVY N + T+P N TPYE W+G PK++HLR+FG
Sbjct: 117 DFYKREGIKPQYTASYSPQQNGVAERKNRSLIEMVRCMLFDAQLEQKYWAEAMNTAVYLQNISPTKPRNN-TPYETWHGVKPKVNHLRIFG 206
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A6P6AH64_DURZI (uncharacterized protein LOC111309412 n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P6AH64_DURZI) HSP 1 Score: 94.0 bits (232), Expect = 3.870e-20 Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 2
Query: 86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
+++A+YTPQQNGV ER R++ EM R + N+ +++W EA + +VY LNR T+ G TP+E WYG+ P + HLRVFG+
Sbjct: 264 QLTATYTPQQNGVNERKNRTIMEMARCMLFEKNLSKKFWAEAVNTSVYLLNRLPTKALKGNTPFEAWYGSKPSVHHLRVFGS 345
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: W8APZ4_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8APZ4_CERCA) HSP 1 Score: 90.9 bits (224), Expect = 5.790e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query: 80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGTR 334
+++++A YTPQQNGVAER+ R++ EM RS ++ A M R+W EA AVY NR+ T+ TPYE+W+G P + H R FG++
Sbjct: 547 RRQLTAPYTPQQNGVAERANRTLVEMARSMLVHAKMNERFWAEAVKTAVYIRNRSATKSLVNTTPYEEWHGIKPTVAHFRTFGSK 631
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: W8AL23_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Ceratitis capitata TaxID=7213 RepID=W8AL23_CERCA) HSP 1 Score: 90.9 bits (224), Expect = 5.980e-19 Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 2
Query: 80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGTR 334
+++++A YTPQQNGVAER+ R++ EM RS ++ A M R+W EA AVY NR+ T+ TPYE+W+G P + H R FG++
Sbjct: 547 RRQLTAPYTPQQNGVAERANRTLVEMARSMLVHAKMNERFWAEAVKTAVYIRNRSATKSLVNTTPYEEWHGIKPTVAHFRTFGSK 631
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A1J3ETN2_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ETN2_NOCCA) HSP 1 Score: 83.6 bits (205), Expect = 8.600e-19 Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 2
Query: 86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
+++A+Y+PQQNGV+ER RS+ EM R+ + ++ ++W EA H A Y NR TR TP E W GT P L+HL+VFG
Sbjct: 3 QLTATYSPQQNGVSERRNRSLVEMARAMIKAKDLPLKFWAEAVHTAAYIQNRIPTRALENKTPLEAWNGTKPSLNHLKVFG 83
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: UPI001CC6DD69 (uncharacterized protein LOC110630572 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC6DD69) HSP 1 Score: 89.0 bits (219), Expect = 2.850e-18 Identity = 39/81 (48.15%), Postives = 54/81 (66.67%), Query Frame = 2
Query: 86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
+++ASYTPQQNGVAER RS+ EM +S + N+ + +W EA H A Y LNR+ T + TP+E W G PK+ H ++FG
Sbjct: 702 QLTASYTPQQNGVAERKIRSLVEMAKSMLKAKNLPKSFWAEAIHTAAYILNRSSTSALSNQTPFEAWNGWKPKVKHFKIFG 782
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A6P5RP40_PRUAV (Non-specific serine/threonine protein kinase n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RP40_PRUAV) HSP 1 Score: 89.0 bits (219), Expect = 2.900e-18 Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 2
Query: 56 DIFVRKMA-KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
D F+ K K +++A YTPQ+NGVAER R++ +M R + N+ + +W EA AVY LNRA +R NG PYE W G P + HLRVFG
Sbjct: 1673 DEFLEKNGIKHQLTARYTPQENGVAERKNRTIMDMVRCMLKLKNLPKCFWAEAVACAVYILNRAPSRSVNGRIPYEVWSGRKPNIQHLRVFG 1764
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 88.6 bits (218), Expect = 3.870e-18 Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 2
Query: 80 KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
K++++A+YTPQQNGVAER RSV MTR ++ ++ R++W EA AVY LNR+ ++ N TP EKW P ++HLR+FG+
Sbjct: 585 KRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGS 668
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A251RQU6_HELAN (Putative ribonuclease H-like domain, Reverse transcriptase, RNA-dependent DNA polymerase n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251RQU6_HELAN) HSP 1 Score: 87.8 bits (216), Expect = 6.350e-18 Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 2
Query: 86 EISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFGT 331
+++ S+TPQQNGVAER R++ E++RS M + YW EA A Y LNR +T+ TPYE W G P +DHLRVFG+
Sbjct: 7 QLTNSFTPQQNGVAERKNRTLMELSRSMMNVKQLPNCYWAEAIACATYILNRTITKTRPNQTPYEAWNGRKPNVDHLRVFGS 88
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Match: A0A2P6PN01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6PN01_ROSCH) HSP 1 Score: 87.8 bits (216), Expect = 7.070e-18 Identity = 42/92 (45.65%), Postives = 59/92 (64.13%), Query Frame = 2
Query: 56 DIFVRKMA-KQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAVYCLNRALTRPHNGGTPYEKWYGTTPKLDHLRVFG 328
D F++K K +++A YTPQQNGVAER R++ +M R + + + +W EA AVY LNR+ +R +G TPYE W G P + H+RVFG
Sbjct: 556 DDFLKKNGIKHQLTARYTPQQNGVAERKNRTIMDMVRCMLKFKGLPKYFWAEAVSCAVYILNRSPSRSIDGSTPYEVWSGHKPNIQHMRVFG 647 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6985.14928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6985.14928.1 >prot_H-paniculata_contig6985.14928.1 ID=prot_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp MAKQEISASYTPQQNGVAERSWRSVFEMTRSKMITANMGRRYWVEAAHAAback to top mRNA from alignment at H-paniculata_contig6985:8354..8696- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6985.14928.1 ID=mRNA_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=343bp|location=Sequence derived from alignment at H-paniculata_contig6985:8354..8696- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6985:8354..8696- >mRNA_H-paniculata_contig6985.14928.1 ID=mRNA_H-paniculata_contig6985.14928.1|Name=mRNA_H-paniculata_contig6985.14928.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig6985:8354..8696- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |