mRNA_H-paniculata_contig6970.14912.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6970.14912.1
Unique NamemRNA_H-paniculata_contig6970.14912.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A6H5J7C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 7.820e-49
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELARALPSTAGVGATG 282
            QVL +VQEGKLD+GGNSPQKLCLVAICYHN+AVEQLILRH GEACMSSQNARRLARLCLSYSNRWL SFEGTHKLALAEL+R+L +T G GA G
Sbjct:   90 QVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELSRSLSTTGGDGAGG 183          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: D8LGQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ9_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 2.280e-48
Identity = 81/94 (86.17%), Postives = 87/94 (92.55%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELARALPSTAGVGATG 282
            QVL +VQEGKLD+GGNSPQKLCLVAICYHN+AVEQLILRH GEACMSSQNARRLARLCLSYSNRWL SFEGTHKLALAEL+R+L +T G GA G
Sbjct:  127 QVLAMVQEGKLDVGGNSPQKLCLVAICYHNMAVEQLILRHAGEACMSSQNARRLARLCLSYSNRWLHSFEGTHKLALAELSRSLSTTGGDGAGG 220          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A7S4DBW1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBW1_HETAK)

HSP 1 Score: 132 bits (333), Expect = 2.290e-37
Identity = 63/81 (77.78%), Postives = 72/81 (88.89%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELA 243
            QVL +V+ G+LD+GG SPQKLCLVA+ YHNIAVEQL LRHV  AC +SQNARRLARLCLSYSNRWL++FE THK+ALAELA
Sbjct:   56 QVLHLVEAGRLDVGGQSPQKLCLVAVAYHNIAVEQLALRHVAGACTASQNARRLARLCLSYSNRWLKNFEATHKIALAELA 136          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A7S2AIR5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AIR5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.960e-36
Identity = 61/81 (75.31%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIG-GNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAEL 240
            QVL +V+ G+L++G G  PQKLCL+A+CYHNIAVEQLILRHV EAC+SSQNARRLARLCLSYSNRW++SFE TH++AL EL
Sbjct:   48 QVLAMVESGQLEVGQGQQPQKLCLIAVCYHNIAVEQLILRHVPEACISSQNARRLARLCLSYSNRWIKSFEYTHQVALGEL 128          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A7S1U6F4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6F4_9STRA)

HSP 1 Score: 123 bits (309), Expect = 1.780e-30
Identity = 59/81 (72.84%), Postives = 71/81 (87.65%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELA 243
            Q+L +V++ KLDIGG +PQKLCLVA+ YHNIAVEQL LRHV EAC+SSQNARRLARLCLSYSNR++  F+ TH+ ALA+LA
Sbjct:  791 QILTLVEDRKLDIGGLAPQKLCLVAVTYHNIAVEQLALRHVSEACISSQNARRLARLCLSYSNRFISQFDRTHRAALADLA 871          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A7S2WRN3_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WRN3_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.430e-26
Identity = 46/80 (57.50%), Postives = 63/80 (78.75%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAEL 240
            Q+L +V++ +L IGG + QK+CL+A+ YHNI +EQ+ +R   EAC+SSQN RRLARL LSY+NRW+ +FE THK AL +L
Sbjct:   60 QILQMVEDERLQIGGTNAQKICLIAVAYHNITIEQIFMRRPAEACVSSQNGRRLARLSLSYANRWINNFESTHKFALRKL 139          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A2R5GTB3_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTB3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.240e-25
Identity = 50/81 (61.73%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELA 243
            Q+L +V + +L +GG + QK+C+VA+CYHNIAVEQL+LR   EAC+SSQNARRLARL LS++NRW+  FE TH+ AL  LA
Sbjct:  313 QILDMVDDERLQVGGTNAQKICMVAVCYHNIAVEQLVLRRPAEACVSSQNARRLARLSLSFANRWINWFERTHQYALQRLA 393          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A812XAI2_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812XAI2_9DINO)

HSP 1 Score: 102 bits (253), Expect = 3.840e-25
Identity = 51/84 (60.71%), Postives = 62/84 (73.81%), Query Frame = 1
Query:    4 VLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELARALP 255
            VL +V E +L+ GG S QK+C+VA+CYHN+AVE L L    EAC+ SQNARRLARL LSYSNR+LR FE TH  AL  L+ + P
Sbjct:   64 VLQLVDEERLETGGASAQKICMVAVCYHNVAVEHLALHQPQEACVDSQNARRLARLSLSYSNRYLRHFETTHAAALEALSLSKP 147          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A835Z279_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z279_9STRA)

HSP 1 Score: 103 bits (257), Expect = 7.720e-25
Identity = 52/80 (65.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    4 VLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELA 243
            VL +V+ G      N+ Q+LC+VA+CYHNIA EQL+     EAC SSQNAR+LARLCLSYSNRWL  FEGTHKLAL+ LA
Sbjct:  152 VLAMVRRGSGGSSSNA-QQLCMVAVCYHNIAAEQLMAGRFAEACASSQNARKLARLCLSYSNRWLHHFEGTHKLALSGLA 230          
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Match: A0A3R6XSZ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XSZ9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 3.470e-24
Identity = 52/86 (60.47%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    4 VLVIVQEGKLDI---GGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQNARRLARLCLSYSNRWLRSFEGTHKLALAELARAL 252
            +L +V+E KL+    GG S QKLCLVA+CY+N+A+EQL L+ V  A  SSQNARRLARLCLSYSNRWL  FE THK  +  +A  L
Sbjct:  117 ILALVEEAKLEEDGGGGASAQKLCLVAVCYNNLALEQLHLKDVDGAATSSQNARRLARLCLSYSNRWLAQFENTHKAVIRAMATLL 202          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6970.14912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J7C3_9PHAE7.820e-4986.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGQ9_ECTSI2.280e-4886.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DBW1_HETAK2.290e-3777.78Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AIR5_9STRA3.960e-3675.31Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1U6F4_9STRA1.780e-3072.84Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2WRN3_9STRA1.430e-2657.50Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A2R5GTB3_9STRA1.240e-2561.73Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
A0A812XAI2_9DINO3.840e-2560.71Hypothetical protein n=1 Tax=Symbiodinium sp. KB8 ... [more]
A0A835Z279_9STRA7.720e-2565.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3R6XSZ9_9STRA3.470e-2460.47Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6970contigH-paniculata_contig6970:1779..2963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score164.5
Seed ortholog evalue2.9e-38
Seed eggNOG ortholog2880.D8LGQ9
Hectar predicted targeting categoryother localisation
EggNOG OGs29KZ4@1,2RU8C@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.309917-CDS-H-paniculata_contig6970:1778..20151622930838.309917-CDS-H-paniculata_contig6970:1778..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6970 1779..2015 -
1691481475.2124825-CDS-H-paniculata_contig6970:1778..20151691481475.2124825-CDS-H-paniculata_contig6970:1778..2015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6970 1779..2015 -
1622930838.3341675-CDS-H-paniculata_contig6970:2867..29631622930838.3341675-CDS-H-paniculata_contig6970:2867..2963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6970 2868..2963 -
1691481475.2232327-CDS-H-paniculata_contig6970:2867..29631691481475.2232327-CDS-H-paniculata_contig6970:2867..2963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6970 2868..2963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6970.14912.1prot_H-paniculata_contig6970.14912.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6970 1779..2963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6970.14912.1

>prot_H-paniculata_contig6970.14912.1 ID=prot_H-paniculata_contig6970.14912.1|Name=mRNA_H-paniculata_contig6970.14912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
QVLVIVQEGKLDIGGNSPQKLCLVAICYHNIAVEQLILRHVGEACMSSQN
ARRLARLCLSYSNRWLRSFEGTHKLALAELARALPSTAGVGATGAGRGSG
EAIGRSGDGEG
back to top

mRNA from alignment at H-paniculata_contig6970:1779..2963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6970.14912.1 ID=mRNA_H-paniculata_contig6970.14912.1|Name=mRNA_H-paniculata_contig6970.14912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1185bp|location=Sequence derived from alignment at H-paniculata_contig6970:1779..2963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCTAGTCATCGTCCAAGAGGGAAAGCTCGATATCGGAGGGAACTC TCCGCAGAAACTGTGCCTGGTGGCCATCTGCTACCACAACATTGCCGTGA GTCTATCGCCTTCATAGAGTACAGTAGGGGGGCCTACACAAGGTACCCCA CTTTGAGGATATCGCAGCGTAGAAGCACTTCAAATGTTTCTGCATCTCTT CTTCATTCGTGAAATTGTAGAGTAGGGACTGAATGCGGTGCCTCCAGCTT ATGAGCTAGCTTTTTTTGGCTGGACACTACGGGGTACTTTCTGTAGGCGC CCCTACTGTGCCGTGTGGTAGAATAGAATAACCTTGTTTTGTTTTCGACC GCTGGATGGTGATGATAAAAACACTGATGCTGATGATGATGGTGCATATG ATGTATGGTCGAGACCATTAGTGCTCGATGTGTTCTCATGCTTCAAAAGA TCCCAATCAAAGTACTTGTATTTGGGAGGGAACCAGTGCAGTACAAAATC GCAAGGGTGTCAATACACACGGCGGAAAGTCGAAATCGAGGATACGTTCT CCTCTTCCTGATCAAAGCATTCCTGCGCGGTACAGTGGAGCAGCATCCAA AAACTGAGCGCCGATCGTTTTCGGATAACTCGTTGTTTTCGAGGAGGGTG CATCGAGATAGATAGTGGTACCATTGAGAAAATTGTTTCCCTGACATCCT GTTGCAAAGGGACTGTCCTTTCTGCACCTCAGGGGCGTGGATGAGAGCAT TTCTTCCCTGAAAAAACGTCCGAAAAATTCCTCATAAAATCCCCTCGTCA GCATGTATCCCACTAGAATATTCATCGTGAAGCACGATGAATCCTTGAGC AATCCCTCTGCACCACCAGTCGGTCGGTCCTTCTCGTTGGCGTACACACG ACAGAAAGACGCTTTCCTCGCCTTCAACGCCCTCCCCCTTCCCAAAAGGT GGAACAACTGATACTGCGGCACGTCGGGGAGGCTTGCATGAGCAGCCAGA ATGCCCGACGGCTGGCGCGATTGTGCTTGTCATACTCCAACCGGTGGCTG CGATCTTTCGAGGGCACTCACAAGCTAGCCTTGGCCGAGCTTGCGAGGGC CCTGCCATCTACCGCGGGGGTCGGAGCCACGGGCGCGGGCCGGGGAAGCG GAGAGGCAATTGGACGAAGTGGCGACGGGGAAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6970:1779..2963-

>mRNA_H-paniculata_contig6970.14912.1 ID=mRNA_H-paniculata_contig6970.14912.1|Name=mRNA_H-paniculata_contig6970.14912.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig6970:1779..2963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGCTAGTCATCGTCCAAGAGGGAAAGCTCGATATCGGAGGGAACTC
TCCGCAGAAACTGTGCCTGGTGGCCATCTGCTACCACAACATTGCCCAGG
TGCTAGTCATCGTCCAAGAGGGAAAGCTCGATATCGGAGGGAACTCTCCG
CAGAAACTGTGCCTGGTGGCCATCTGCTACCACAACATTGCCGTGGAACA
ACTGATACTGCGGCACGTCGGGGAGGCTTGCATGAGCAGCCAGAATGCCC
GACGGCTGGCGCGATTGTGCTTGTCATACTCCAACCGGTGGCTGCGATCT
TTCGAGGGCACTCACAAGCTAGCCTTGGCCGAGCTTGCGAGGGCCCTGCC
ATCTACCGCGGGGGTCGGAGCCACGGGCGCGGGCCGGGGAAGCGGAGAGG
CAATTGGACGAAGTGGCGACGGGGAAGGGGTGGAACAACTGATACTGCGG
CACGTCGGGGAGGCTTGCATGAGCAGCCAGAATGCCCGACGGCTGGCGCG
ATTGTGCTTGTCATACTCCAACCGGTGGCTGCGATCTTTCGAGGGCACTC
ACAAGCTAGCCTTGGCCGAGCTTGCGAGGGCCCTGCCATCTACCGCGGGG
GTCGGAGCCACGGGCGCGGGCCGGGGAAGCGGAGAGGCAATTGGACGAAG
TGGCGACGGGGAAGGG
back to top