mRNA_H-paniculata_contig6880.14801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE) HSP 1 Score: 181 bits (460), Expect = 3.590e-55 Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 1
Query: 43 KVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
+VR+KM+YS+SKQD+RQGLGLGFFEGEYYANV DL FESL+ASR+ GSGDQLLSEAELLKR+LNKQERASDAGMKSAAMGVIPFK+ DLRA+LQ FG+ GG V+W+EM
Sbjct: 5 RVREKMIYSTSKQDVRQGLGLGFFEGEYYANVPSDLTFESLVASRRAGSGDQLLSEAELLKRDLNKQERASDAGMKSAAMGVIPFKVKGDLRAQLQTFGSGGGDVDWIEM 114
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA) HSP 1 Score: 128 bits (322), Expect = 1.350e-33 Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query: 7 QWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
+WLL+AW+PD SK R KMLYSSSK D+++GLGLG+F GEYYA+ +L++ +LLASR LL+E E++++E+ +Q R D KS AMGVIPF+ D+LR +L+AF G+VNWV M
Sbjct: 82 KWLLIAWVPDVSKTRLKMLYSSSKADVKEGLGLGYFGGEYYASEPSELSYAALLASRDTTHDGDLLTEREVIQKEMARQAR--DITAKSTAMGVIPFEATDELRRQLEAF--KAGAVNWVGM 199
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S1TUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUC3_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.530e-27 Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 7 QWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
+WLLV+W+PD +KVRDKML+S+S+ D + LG GFF G+YYAN DL + S GD L+EAE LK+E + + S KS+AMGV+PF +DL ++ F DGG V+WVEM
Sbjct: 44 KWLLVSWVPDTAKVRDKMLFSASRDDFKSALGRGFFAGDYYANSPEDLDLANFEPSGGE-KGDAPLTEAEKLKQEADAADMESSQTTKSSAMGVVPFNFTNDLLTAIETF-RDGG-VSWVEM 162
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S3HH81_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH81_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.950e-25 Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
++ W +VAW+PD +VRDKMLYSSS++D+++ LGLGFF+ EY AN + DL + S +L+E+E L E +Q +A A KS+A+ V+PF + ++ +L AF G+ NWVEM
Sbjct: 83 SSPWCMVAWVPDGCRVRDKMLYSSSREDLKRSLGLGFFKSEYAANQRSDLTWSQYQHSLDRNFDADVLTESERLVLEEKQQVQAESAVSKSSALSVLPFAMTSEVTEQLNAFKE--GTCNWVEM 204
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7R9YEV0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEV0_9STRA) HSP 1 Score: 106 bits (264), Expect = 4.830e-25 Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
A +WLLVAW+PD + VR KML+SSS+ DI+ LG F G+YYAN DL F +S+ + + L+EAE+L++E + S K++AMGV+PF DD + + F G V+WVE+
Sbjct: 80 AREWLLVAWVPDTAPVRQKMLFSSSRDDIKSALGRALFAGDYYANSADDLKFSQYQSSQPSAAAEAPLTEAEILRKEAATADMQSSHVTKASAMGVVPFNFTDDTLSSMDDFRD--GRVSWVEI 201
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S2FAT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAT2_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.820e-22 Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
A W++++W+PD +KVRDKMLYSSS+ D+R+ LG+G+F +YYAN K D+ + + S+ D LS E L++E ER D ++S AM I F +++D+++ L AF G VN VE+
Sbjct: 47 ARHWVIISWVPDLAKVRDKMLYSSSRDDLRKTLGMGYFPTDYYANEKSDMTWATY--SKGLERNDAPLSATEQLQKEEAMMER--DTSIRSNAMKAIEFGMSEDVKSNLVAF--KAGDVNLVEL 164
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: M4BW26_HYAAE (ADF-H domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW26_HYAAE) HSP 1 Score: 95.1 bits (235), Expect = 8.580e-22 Identity = 48/125 (38.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEMV 375
A +W+L+A++P+ VRD+MLYSSS+ +++ LGL +F GE++A ++ + + LA+R + D LSE+E L +E ER D +KS+AMGV+PF++ ++R +L+ D +W+ MV
Sbjct: 78 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELSEVTWANFLAARTKHAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITQNVREKLKLLQDD--KFDWIAMV 198
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: K3WLI0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLI0_GLOUD) HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21 Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
A +W+L+A++P+ VRDKMLYSSS++ +++ LG+ +F GE++A D+ FES +++ + D LSE E L +E ER D +KS AMGVIPF++ ++R +L F G +W+ M
Sbjct: 78 ALRWILLAFVPEGVNVRDKMLYSSSRESLKKQLGMNYFVGEFHATETSDVTFESFQNAKKKHAADAPLSETERLLKETALLER--DTNVKSTAMGVIPFEITQNVREKLALF--KDGKFDWIAM 197
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A225WA37_9STRA (Twinfilin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA37_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.930e-21 Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
A +W+L+A++P+ VRD+MLYSSS+ +++ LGL +F GE++A ++ +ES L +R+ + D LSE+E L +E K ER D +KS+AMGV+PF++ ++R +L+ +W+ M
Sbjct: 77 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFAGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAKLER--DTNVKSSAMGVVPFEITQNVRDKLRLL--QDNKFDWIAM 196
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A3M6VJX2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJX2_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 4.080e-20 Identity = 47/124 (37.90%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
A +W+L+A++P+ VRD+MLYSSS+ +++ LGL +F GE++A ++ +ES L +R+ + D LSE+E L +E ER D +KS+AMGV+PF++ ++R +L+ + +W+ M
Sbjct: 78 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELREVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFQITQNVRDKLRLLKEN--KFDWISM 197 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6880.14801.1 >prot_H-paniculata_contig6880.14801.1 ID=prot_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLback to top mRNA from alignment at H-paniculata_contig6880:2614..3841- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6880.14801.1 ID=mRNA_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-paniculata_contig6880:2614..3841- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6880:2614..3841- >mRNA_H-paniculata_contig6880.14801.1 ID=mRNA_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig6880:2614..3841- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |