mRNA_H-paniculata_contig6880.14801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6880.14801.1
Unique NamemRNA_H-paniculata_contig6880.14801.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A6H5L2D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2D8_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 3.590e-55
Identity = 88/110 (80.00%), Postives = 101/110 (91.82%), Query Frame = 1
Query:   43 KVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            +VR+KM+YS+SKQD+RQGLGLGFFEGEYYANV  DL FESL+ASR+ GSGDQLLSEAELLKR+LNKQERASDAGMKSAAMGVIPFK+  DLRA+LQ FG+ GG V+W+EM
Sbjct:    5 RVREKMIYSTSKQDVRQGLGLGFFEGEYYANVPSDLTFESLVASRRAGSGDQLLSEAELLKRDLNKQERASDAGMKSAAMGVIPFKVKGDLRAQLQTFGSGGGDVDWIEM 114          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A835YV51_9STRA (ADF-H domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV51_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.350e-33
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 QWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            +WLL+AW+PD SK R KMLYSSSK D+++GLGLG+F GEYYA+   +L++ +LLASR       LL+E E++++E+ +Q R  D   KS AMGVIPF+  D+LR +L+AF    G+VNWV M
Sbjct:   82 KWLLIAWVPDVSKTRLKMLYSSSKADVKEGLGLGYFGGEYYASEPSELSYAALLASRDTTHDGDLLTEREVIQKEMARQAR--DITAKSTAMGVIPFEATDELRRQLEAF--KAGAVNWVGM 199          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S1TUC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUC3_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.530e-27
Identity = 59/122 (48.36%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    7 QWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            +WLLV+W+PD +KVRDKML+S+S+ D +  LG GFF G+YYAN   DL   +   S     GD  L+EAE LK+E +  +  S    KS+AMGV+PF   +DL   ++ F  DGG V+WVEM
Sbjct:   44 KWLLVSWVPDTAKVRDKMLFSASRDDFKSALGRGFFAGDYYANSPEDLDLANFEPSGGE-KGDAPLTEAEKLKQEADAADMESSQTTKSSAMGVVPFNFTNDLLTAIETF-RDGG-VSWVEM 162          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S3HH81_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH81_9STRA)

HSP 1 Score: 106 bits (265), Expect = 3.950e-25
Identity = 53/124 (42.74%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            ++ W +VAW+PD  +VRDKMLYSSS++D+++ LGLGFF+ EY AN + DL +     S        +L+E+E L  E  +Q +A  A  KS+A+ V+PF +  ++  +L AF    G+ NWVEM
Sbjct:   83 SSPWCMVAWVPDGCRVRDKMLYSSSREDLKRSLGLGFFKSEYAANQRSDLTWSQYQHSLDRNFDADVLTESERLVLEEKQQVQAESAVSKSSALSVLPFAMTSEVTEQLNAFKE--GTCNWVEM 204          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7R9YEV0_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEV0_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.830e-25
Identity = 53/124 (42.74%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            A +WLLVAW+PD + VR KML+SSS+ DI+  LG   F G+YYAN   DL F    +S+   + +  L+EAE+L++E    +  S    K++AMGV+PF   DD  + +  F    G V+WVE+
Sbjct:   80 AREWLLVAWVPDTAPVRQKMLFSSSRDDIKSALGRALFAGDYYANSADDLKFSQYQSSQPSAAAEAPLTEAEILRKEAATADMQSSHVTKASAMGVVPFNFTDDTLSSMDDFRD--GRVSWVEI 201          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A7S2FAT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAT2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 6.820e-22
Identity = 52/124 (41.94%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            A  W++++W+PD +KVRDKMLYSSS+ D+R+ LG+G+F  +YYAN K D+ + +   S+     D  LS  E L++E    ER  D  ++S AM  I F +++D+++ L AF    G VN VE+
Sbjct:   47 ARHWVIISWVPDLAKVRDKMLYSSSRDDLRKTLGMGYFPTDYYANEKSDMTWATY--SKGLERNDAPLSATEQLQKEEAMMER--DTSIRSNAMKAIEFGMSEDVKSNLVAF--KAGDVNLVEL 164          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: M4BW26_HYAAE (ADF-H domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BW26_HYAAE)

HSP 1 Score: 95.1 bits (235), Expect = 8.580e-22
Identity = 48/125 (38.40%), Postives = 81/125 (64.80%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEMV 375
            A +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A    ++ + + LA+R   + D  LSE+E L +E    ER  D  +KS+AMGV+PF++  ++R +L+    D    +W+ MV
Sbjct:   78 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELSEVTWANFLAARTKHAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFEITQNVREKLKLLQDD--KFDWIAMV 198          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: K3WLI0_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WLI0_GLOUD)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-21
Identity = 50/124 (40.32%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            A +W+L+A++P+   VRDKMLYSSS++ +++ LG+ +F GE++A    D+ FES   +++  + D  LSE E L +E    ER  D  +KS AMGVIPF++  ++R +L  F    G  +W+ M
Sbjct:   78 ALRWILLAFVPEGVNVRDKMLYSSSRESLKKQLGMNYFVGEFHATETSDVTFESFQNAKKKHAADAPLSETERLLKETALLER--DTNVKSTAMGVIPFEITQNVREKLALF--KDGKFDWIAM 197          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A225WA37_9STRA (Twinfilin n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA37_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.930e-21
Identity = 48/124 (38.71%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            A +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A    ++ +ES L +R+  + D  LSE+E L +E  K ER  D  +KS+AMGV+PF++  ++R +L+         +W+ M
Sbjct:   77 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFAGEFHATELSEVTWESFLEARKKQAADAPLSESERLLKEAAKLER--DTNVKSSAMGVVPFEITQNVRDKLRLL--QDNKFDWIAM 196          
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Match: A0A3M6VJX2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VJX2_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 4.080e-20
Identity = 47/124 (37.90%), Postives = 81/124 (65.32%), Query Frame = 1
Query:    1 ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDLAFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFKLNDDLRAELQAFGTDGGSVNWVEM 372
            A +W+L+A++P+   VRD+MLYSSS+  +++ LGL +F GE++A    ++ +ES L +R+  + D  LSE+E L +E    ER  D  +KS+AMGV+PF++  ++R +L+    +    +W+ M
Sbjct:   78 ALRWVLLAFVPESVSVRDRMLYSSSRDSLKKQLGLNYFSGEFHATELREVTWESFLEARKKQAADAPLSESERLLKEAAMLER--DTNVKSSAMGVVPFQITQNVRDKLRLLKEN--KFDWISM 197          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6880.14801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2D8_9PHAE3.590e-5580.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV51_9STRA1.350e-3353.28ADF-H domain-containing protein n=3 Tax=Tribonema ... [more]
A0A7S1TUC3_9STRA1.530e-2748.36Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3HH81_9STRA3.950e-2542.74Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9YEV0_9STRA4.830e-2542.74Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FAT2_9STRA6.820e-2241.94Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
M4BW26_HYAAE8.580e-2238.40ADF-H domain-containing protein n=1 Tax=Hyaloperon... [more]
K3WLI0_GLOUD1.030e-2140.32Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A225WA37_9STRA1.930e-2138.71Twinfilin n=1 Tax=Phytophthora megakarya TaxID=479... [more]
A0A3M6VJX2_9STRA4.080e-2037.90Uncharacterized protein n=1 Tax=Peronospora effusa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6880contigH-paniculata_contig6880:2614..3841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.2e-18
Seed eggNOG ortholog65071.PYU1_T005822
KEGG koko:K08870
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Twinfilin. Source PGD
EggNOG OGs1MBSU@121069,KOG1747@1,KOG1747@2759
COG Functional cat.W
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6880.14801.1prot_H-paniculata_contig6880.14801.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6880 2614..3841 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930823.680828-CDS-H-paniculata_contig6880:2613..27731622930823.680828-CDS-H-paniculata_contig6880:2613..2773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 2614..2773 -
1691481468.692083-CDS-H-paniculata_contig6880:2613..27731691481468.692083-CDS-H-paniculata_contig6880:2613..2773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 2614..2773 -
1622930823.7209814-CDS-H-paniculata_contig6880:3278..34481622930823.7209814-CDS-H-paniculata_contig6880:3278..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3279..3448 -
1691481468.705558-CDS-H-paniculata_contig6880:3278..34481691481468.705558-CDS-H-paniculata_contig6880:3278..3448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3279..3448 -
1622930823.7399576-CDS-H-paniculata_contig6880:3796..38411622930823.7399576-CDS-H-paniculata_contig6880:3796..3841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3797..3841 -
1691481468.7159498-CDS-H-paniculata_contig6880:3796..38411691481468.7159498-CDS-H-paniculata_contig6880:3796..3841Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6880 3797..3841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6880.14801.1

>prot_H-paniculata_contig6880.14801.1 ID=prot_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
ATQWLLVAWIPDDSKVRDKMLYSSSKQDIRQGLGLGFFEGEYYANVKGDL
AFESLLASRQHGSGDQLLSEAELLKRELNKQERASDAGMKSAAMGVIPFK
LNDDLRAELQAFGTDGGSVNWVEMV
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mRNA from alignment at H-paniculata_contig6880:2614..3841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6880.14801.1 ID=mRNA_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1228bp|location=Sequence derived from alignment at H-paniculata_contig6880:2614..3841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACCCAATGGTTGCTTGTTGCATGGATCCCGGACGACTCAAAGGTCAG CTGTCAGCCGCTGGTAGTGTTACATACTGCAGGGCGTGTGCGGTTGCAAG GAATTGACGCTTAGTGCCGTCGAAGAGTATCGTGACCCGTAAGGATTGCA GCGTGACGTGCTTACCGGAGAAAATGGGGTAGACCGTCGACAAAATCGTT GTTCTGAGTGCTCTGCGCGCTCCCTCCTAATTGTTTAGATCACCATCGTG ATATTTTTAGTAGTAATTAGTTCCGGAGCAGGAGGAATCGTGCATTTACA CACATGTGCCACAGTCGGTTCTTTGTGTAAAAGCTCACGACAACATGCAA AAGTCCTAACTGTTTTGCATGTGCCTCACCCAAAATATAATAGGTGCGGG ATAAGATGCTCTACTCGTCATCGAAGCAAGATATCCGGCAAGGGCTAGGC CTGGGCTTCTTCGAGGGAGAGTACTATGCTAACGTCAAGGGCGATCTTGC TTTCGAAAGTCTCCTGGCCAGCAGGCAGCATGGTAGCGGCGACCAGCTCT TGAGCGAGGCAGAGTGAGCCCCATATTTTGTTTGTGTATGTGTGTGTATT TGTGTGTATGTTACAGCAGCCAGTAGAGATGGTACTCGTGATGTGTATTA TGGACCTTCTTTAGGGTCGGGCGTTCGCATATCATTGTTTGTTTCCTCTG TGAGATGACCGAAGTGCAGATAATGAGACCTGCAAGATTCCAGCGATTAT ATCGTTGAGGGGTGAAGGGTTCGTTTCTGTTGCGTTGAGGCCGAAGGTGC ACCTTTCCTGAAGCCTTGCTTTTTTTCCCTGTGTGCTCACCATTGCAATG TGTATAGCTTAACTGGGGTCTCGATGTTTAACACAATTGACTACGGGCTT TTTATTGGAGTCACGAGATACTTTGTGTTGCAAACGTTACGTTATAGGCT GCGACACCATTGATTGTGCCCCGCATATCCGTTGACTTATCTTATTAACA GCCCGGGAAGTACTTATCTTGACCTATCAATAGTTTCTTTTTGTACTGCT TGTGGACGCACGTGGCAGACTACTGAAGCGCGAATTAAACAAGCAAGAGC GGGCAAGCGACGCCGGCATGAAGTCAGCGGCCATGGGTGTTATACCTTTC AAACTCAACGATGATCTGAGGGCCGAGTTGCAGGCATTCGGCACTGACGG AGGAAGCGTAAATTGGGTCGAAATGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6880:2614..3841-

>mRNA_H-paniculata_contig6880.14801.1 ID=mRNA_H-paniculata_contig6880.14801.1|Name=mRNA_H-paniculata_contig6880.14801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig6880:2614..3841- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAACCCAATGGTTGCTTGTTGCATGGATCCCGGACGACTCAAAGGCAAC
CCAATGGTTGCTTGTTGCATGGATCCCGGACGACTCAAAGGTGCGGGATA
AGATGCTCTACTCGTCATCGAAGCAAGATATCCGGCAAGGGCTAGGCCTG
GGCTTCTTCGAGGGAGAGTACTATGCTAACGTCAAGGGCGATCTTGCTTT
CGAAAGTCTCCTGGCCAGCAGGCAGCATGGTAGCGGCGACCAGCTCTTGA
GCGAGGCAGAGTGCGGGATAAGATGCTCTACTCGTCATCGAAGCAAGATA
TCCGGCAAGGGCTAGGCCTGGGCTTCTTCGAGGGAGAGTACTATGCTAAC
GTCAAGGGCGATCTTGCTTTCGAAAGTCTCCTGGCCAGCAGGCAGCATGG
TAGCGGCGACCAGCTCTTGAGCGAGGCAGAACTACTGAAGCGCGAATTAA
ACAAGCAAGAGCGGGCAAGCGACGCCGGCATGAAGTCAGCGGCCATGGGT
GTTATACCTTTCAAACTCAACGATGATCTGAGGGCCGAGTTGCAGGCATT
CGGCACTGACGGAGGAAGCGTAAATTGGGTCGAAATGGTGACTACTGAAG
CGCGAATTAAACAAGCAAGAGCGGGCAAGCGACGCCGGCATGAAGTCAGC
GGCCATGGGTGTTATACCTTTCAAACTCAACGATGATCTGAGGGCCGAGT
TGCAGGCATTCGGCACTGACGGAGGAAGCGTAAATTGGGTCGAAATGGTG
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