prot_H-paniculata_contig6683.14571.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6683.14571.1
Unique Nameprot_H-paniculata_contig6683.14571.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length312
Homology
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 9.900e-49
Identity = 130/275 (47.27%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   41 SGPIRARAGGVGRATRAEAAAPYRQQRPTRASESVFDRLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILPNG-ADPSKRGMGVGGGSGRADVIRGRG------APTXXXXXXXXXXXXXMGNSWTEAPSVAFSNPPPRANTAAVGPGPTP-RVPQSRVTVTQPMRAH--------ATVPNVRAGVFGTALDDRD-EDMDMVAAGVGRDLDDYVAPGMNG 298
            SGP+R +  G+ R  R E AAPY  QRPTR ++ V  RLG   D    GTRV V GLN DVM++DIKELF+GVGDLLHC+ID+DR+GRS   A+V+F+RREDAE AVSQFHKRTLDG PM VEI+  G A  S RG            +RGRG      APT              G                              R+PQSR+T+T P+ +         A +PNVRAG+FGT+LDD D    DM     GRDLDDYV PGMNG
Sbjct:   67 SGPMRRQ--GISRVAR-ETAAPY--QRPTRPADGVHSRLG---DPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEGGGATESARGG-----------VRGRGXXXXXXAPTWREPPTSTGAGYQNGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMPQSRITMTGPVASRLQYQQPPQAAIPNVRAGLFGTSLDDVDGHHADMDEDVPGRDLDDYVHPGMNG 322          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 2.490e-40
Identity = 88/136 (64.71%), Postives = 102/136 (75.00%), Query Frame = 0
Query:   41 SGPIRARAGGVGRATRAEAAAPYRQQRPTRASESVFDRLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILPNG-ADPSKRG 175
            SGP+R +  G+ RA R E AAPY  QRPTR S+ V  RLG   D    GTRV V GLN DVM++DIKELF+GVGDLLHC+IDYDR+GRS   A+V+F+RREDAE AVSQFHKRTLDG PM+VEI+  G A  S RG
Sbjct:   67 SGPMRRQ--GISRAAR-ETAAPY--QRPTRPSDGVHSRLG---DPVVAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVEGGGAAESARG 194          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A5A7P803_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P803_STRAF)

HSP 1 Score: 97.4 bits (241), Expect = 2.480e-20
Identity = 46/94 (48.94%), Postives = 65/94 (69.15%), Query Frame = 0
Query:   78 RLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILPNGADP 171
            R+G RV     GT++ +S L+H V ++DI+ELFSG+G+L  C I YDRSGRS+  A+VVF RR DAE A+ +++   LDG PM +E++    DP
Sbjct:   64 RVGARVSSIETGTKLLISNLHHGVTDEDIEELFSGIGELKSCSIHYDRSGRSEGTAVVVFCRRRDAETAIKRYNNVQLDGMPMRIELVGMNMDP 157          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A7J0GR35_9ERIC (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GR35_9ERIC)

HSP 1 Score: 91.3 bits (225), Expect = 1.730e-18
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   61 APYRQQRPTRASESVFDRLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEIL 165
            APY        + S   + GGRV     GT++ +S L++ V  +DIKELFS VGDL    I YDRSGRSK  A +V+ RR+DA+ AV +++   LDG PM +EI+
Sbjct:   53 APYAPPNAMDQAMSYAGQTGGRVSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEIVYSRRQDAQAAVKRYNNVQLDGKPMKIEIV 157          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A022RS00_ERYGU (RRM domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RS00_ERYGU)

HSP 1 Score: 92.4 bits (228), Expect = 1.800e-18
Identity = 49/98 (50.00%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   69 TRASESVFDRLGG-RVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEIL 165
            T A+E  F  +GG RV     GT++ VS L+  V ++DIKE+FSGVGDL  C + YDR GRS+  A VVF RR DAE A+ +++   LDG PM +EI+
Sbjct:   60 TFAAEPAFPVVGGARVSAIETGTKLLVSNLHFGVSDEDIKEIFSGVGDLKSCSVHYDRVGRSEGTAEVVFFRRRDAEAAIKRYNNVQLDGKPMRIEII 157          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A2R6PPY6_ACTCC (THO complex subunit 4A like n=2 Tax=Actinidia chinensis var. chinensis TaxID=1590841 RepID=A0A2R6PPY6_ACTCC)

HSP 1 Score: 91.3 bits (225), Expect = 5.820e-18
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 0
Query:   61 APYRQQRPTRASESVFDRLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEIL 165
            APY        + S   + GGRV     GT++ +S L++ V  +DIKELFS VGDL    I YDRSGRSK  A +V+ RR+DA+ AV +++   LDG PM +EI+
Sbjct:   59 APYTPPNAMDQAMSYAGQTGGRVSSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEIVYSRRQDAQAAVKRYNNVQLDGKPMKIEIV 163          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A484NEN9_9ASTE (RRM domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NEN9_9ASTE)

HSP 1 Score: 90.9 bits (224), Expect = 8.210e-18
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 0
Query:   80 GGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILP-----------------NGADPSKRGMGVGGGSGR 184
            GGR      GT++ +S L++ V  +DIKELF+ +GD+ H  + YDRSGRSK  A VVF RR+DA  A+ ++H   LDG PM +EI+                  NG  PS  G G GGG GR
Sbjct:   81 GGRASSIETGTKIFISNLDYGVSNEDIKELFADIGDMKHYGVHYDRSGRSKGTADVVFSRRQDALTAIKRYHNVQLDGQPMKIEIVGTNIVTPAPPTMGSFGNFNGILPS--GQGRGGGFGR 200          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A388JW90_CHABU (RRM domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JW90_CHABU)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-17
Identity = 51/109 (46.79%), Postives = 66/109 (60.55%), Query Frame = 0
Query:   82 RVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILPNGADPSKRGMGVGGGSGRADVIRG 190
            R  E   GT++ +S L+ +V  DDIKELFS VGDL  C + +DRSGRSK  A VVF RR DA  AV +++   LDG PM ++I+         G G G G+ RA V+ G
Sbjct:   98 RTVELQTGTKLYISNLDFNVSNDDIKELFSEVGDLKRCSVHFDRSGRSKGSAEVVFARRNDALTAVKRYNNVLLDGKPMKIDIIGTNVPTVGVGRGRGVGATRAVVVSG 206          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A251L0L1_MANES (RRM domain-containing protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A251L0L1_MANES)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-17
Identity = 63/142 (44.37%), Postives = 76/142 (53.52%), Query Frame = 0
Query:   45 RARAGGVGRATR-----AEAAAPYRQ--------QRPTRASESV-FDRLGGRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEILPNGADPS 172
            R RA G G A R     A  AAPY          Q    A + V +  L GR      GT++ +S L+  V  +DIKELFS VGDL  C I YDRSGRSK  A VVF RR DA  AV +++   LDG PM +E+  N A P+
Sbjct:   27 RGRASGPGPARRFTNRGANRAAPYTAPKAPETTWQHDMFADQGVGYPGLAGRSPAIETGTKLYISNLHFGVSNEDIKELFSEVGDLKRCSIHYDRSGRSKGTAEVVFSRRTDAVAAVKRYNNVQLDGKPMKIEMATNVATPA 168          
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Match: A0A4Y7LGA1_PAPSO (RRM domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7LGA1_PAPSO)

HSP 1 Score: 90.1 bits (222), Expect = 2.030e-17
Identity = 53/117 (45.30%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   81 GRVDETPPGTRVRVSGLNHDVMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQFHKRTLDGAPMNVEIL------PNGADPSKRGMGVGGGSGRADVIRGR 191
            GR      GT++ +S L++ V  +DIKELFS VGDL  C I YDRSGRSK  A VVF RR DA  AV +++   LDG PM +EI+      P    P   G+ +G  +G    I GR
Sbjct:   89 GRASGIETGTKLYISNLDYGVSNEDIKELFSEVGDLKKCSIHYDRSGRSKGTAEVVFSRRNDASSAVKRYNNVQLDGKPMKIEIVGTNIGAPGARPPPTNGI-IGSPNGAPRSIHGR 204          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6683.14571.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLT1_ECTSI9.900e-4947.27RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KWS3_9PHAE2.490e-4064.71RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A5A7P803_STRAF2.480e-2048.94RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
A0A7J0GR35_9ERIC1.730e-1845.71RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
A0A022RS00_ERYGU1.800e-1850.00RRM domain-containing protein n=1 Tax=Erythranthe ... [more]
A0A2R6PPY6_ACTCC5.820e-1845.71THO complex subunit 4A like n=2 Tax=Actinidia chin... [more]
A0A484NEN9_9ASTE8.210e-1843.44RRM domain-containing protein n=3 Tax=Cuscuta sect... [more]
A0A388JW90_CHABU1.010e-1746.79RRM domain-containing protein n=1 Tax=Chara brauni... [more]
A0A251L0L1_MANES1.010e-1744.37RRM domain-containing protein n=1 Tax=Manihot escu... [more]
A0A4Y7LGA1_PAPSO2.030e-1745.30RRM domain-containing protein n=2 Tax=Papaver somn... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 91..163
e-value: 5.6E-15
score: 65.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 92..159
e-value: 2.4E-13
score: 49.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 90..167
score: 13.976
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 82..213
e-value: 3.4E-19
score: 71.3
NoneNo IPR availablePANTHERPTHR19965:SF35POLYMERASE DELTA-INTERACTING PROTEIN 3coord: 82..196
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 82..196
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 82..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6683contigH-paniculata_contig6683:674..10706 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6683.14571.1mRNA_H-paniculata_contig6683.14571.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6683 498..10706 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6683.14571.1 ID=prot_H-paniculata_contig6683.14571.1|Name=mRNA_H-paniculata_contig6683.14571.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
MRSSQHHVPRTQSVVTVAGGGTFRSAIASTRAPQPSVGGSSGPIRARAGG
VGRATRAEAAAPYRQQRPTRASESVFDRLGGRVDETPPGTRVRVSGLNHD
VMEDDIKELFSGVGDLLHCEIDYDRSGRSKEMAMVVFRRREDAELAVSQF
HKRTLDGAPMNVEILPNGADPSKRGMGVGGGSGRADVIRGRGAPTVSGGG
GGGGGGGGMGNSWTEAPSVAFSNPPPRANTAAVGPGPTPRVPQSRVTVTQ
PMRAHATVPNVRAGVFGTALDDRDEDMDMVAAGVGRDLDDYVAPGMNGGF
MGGGAMGSGGMG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf