mRNA_H-paniculata_contig6603.14479.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6603.14479.1
Unique NamemRNA_H-paniculata_contig6603.14479.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: D7FK35_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK35_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 9.890e-67
Identity = 109/130 (83.85%), Postives = 119/130 (91.54%), Query Frame = 1
Query:    1 MHDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            MHDPN LA+FAS+ PYHADALLQL MVFAHTGQMDRASEFVGR LYVLESA M+ FRP++GA RLDA+LEVN+TY AAMFRHMQM+GM+GGARTALEVGRLLLSLDPLGDPMGCLLALD+H L SRQG F
Sbjct:  293 MHDPNFLASFASRAPYHADALLQLGMVFAHTGQMDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQMAGMVGGARTALEVGRLLLSLDPLGDPMGCLLALDSHALTSRQGGF 422          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A6H5LA68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA68_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 1.040e-66
Identity = 110/132 (83.33%), Postives = 120/132 (90.91%), Query Frame = 1
Query:    1 MHDPNLLAAFASQVPYHADALLQLAMVFAHTGQ--MDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            MHDPN LA+FAS+ PYHADALLQL MVFAHTGQ  MDRASEFVGR LYVLESA M+ FRP++GA RLDA+LEVN+TY AAMFRHMQM+GM+GGARTALEV RLLLSLDPLGDPMGCLLALD+H LASRQGEF
Sbjct:   89 MHDPNFLASFASRAPYHADALLQLGMVFAHTGQASMDRASEFVGRSLYVLESATMEAFRPVDGACRLDATLEVNKTYFAAMFRHMQMAGMVGGARTALEVCRLLLSLDPLGDPMGCLLALDSHALASRQGEF 220          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A835ZGE8_9STRA (Transcriptional repressor TCF25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGE8_9STRA)

HSP 1 Score: 148 bits (373), Expect = 7.060e-39
Identity = 74/128 (57.81%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    7 DPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            DPN +A    Q P+HADALLQL MV+AHTGQMD ASEFV RCLYVLE A ++  +  +G  R+D +   N T   A+FRH Q   MMG  RTA+EV  LLLSLDP+GDPMG LL +D H LA ++G F
Sbjct:  297 DPNNVALLLWQAPHHADALLQLGMVYAHTGQMDHASEFVRRCLYVLECAVLEPCKLASGRVRMDVTHPPNATLFGALFRHAQQCSMMGCRRTAMEVSHLLLSLDPIGDPMGALLCVDCHALACKEGRF 424          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A2D4CKE4_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKE4_PYTIN)

HSP 1 Score: 120 bits (300), Expect = 1.990e-31
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPNL++ F  + P+H DALLQ++ VF H GQMD AS+ + RC+YVLE A  D F    G  R+D + E N  +  A+F   +  G  G  R+A E  +LLL LDP GDPM  LLA+D + +++RQ +F
Sbjct:   17 HDPNLISHFLHRYPFHIDALLQMSEVFQHHGQMDHASDCIKRCMYVLELAWADQFDVTKGNCRMDVNTEHNDGFFKALFLLTKQVGRRGCMRSAFETAKLLLGLDPQGDPMNVLLAIDYYAISARQYDF 145          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A024GI90_9STRA (Uncharacterized protein n=7 Tax=Albugo candida TaxID=65357 RepID=A0A024GI90_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.820e-31
Identity = 60/129 (46.51%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDP  LA F  + PYH DAL+Q++ V+ H GQMD A++ + RC+YV E +  + F   NG SR+D  +E N T+  A+F +MQ +G  G  R+A E+ R++ +LDP GDP+  +LALD + LASRQ  F
Sbjct:  358 HDPQALAEFLYRNPYHLDALIQMSRVYQHHGQMDHATDCIKRCMYVCELSWSENFDVSNGNSRMDYRIETNATFYKALFMYMQQAGRRGCMRSAFELARMIFALDPHGDPVSVVLALDYYALASRQYAF 486          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A5D6XJL8_9STRA (EDR2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJL8_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.450e-30
Identity = 63/129 (48.84%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPN++  F  + PYH DALLQ++ VF H GQMD A++ + RC+Y LE A  D F    G  R+D S E N  +  A+F  M+  G  G  R+A E  +LLL LDPLGDPM  LLA+D + L SRQ +F
Sbjct:  457 HDPNIMGHFLQRYPYHIDALLQMSEVFQHHGQMDHAADCIKRCMYALELAWADQFDVARGECRMDISTEHNAGFFRALFLLMKQVGRRGCMRSAFETAKLLLGLDPLGDPMHVLLAVDYYALTSRQCQF 585          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: W2QZ72_PHYPN (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=W2QZ72_PHYPN)

HSP 1 Score: 124 bits (311), Expect = 1.480e-30
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPNL+A F  + PYH DALL ++ VF H GQMD A++ + RC+YVLE A  D F    G  R+D   E N  +  A+F  M+  G  G  R+A E  +LLLSLDP GDPM  LLA+D + L SRQ +F
Sbjct:  243 HDPNLIAHFLQRYPYHIDALLTMSEVFQHHGQMDHATDCIKRCMYVLELAWADQFDVSKGNCRMDIQTEHNSGFFRALFLLMKQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQF 371          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: G4YZT6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YZT6_PHYSP)

HSP 1 Score: 124 bits (312), Expect = 1.480e-30
Identity = 65/129 (50.39%), Postives = 80/129 (62.02%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPNL+A F  + PYH DALL ++ VF H GQMD AS+ + RC+YVLE A  D F    G  R+D   E N  +  A+F  M+  G  G  R+A E  +LLLSLDP GDPM  LLA+D + L SRQ  F
Sbjct:  722 HDPNLIAHFLQRYPYHIDALLTMSEVFQHHGQMDHASDCIKRCMYVLELAWADQFDVSKGNCRMDIQTEHNAGFFRALFLLMKQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCRF 850          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: A0A6G0PRE5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PRE5_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.670e-30
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPNL+A F  + PYH DALL ++ VF H GQMD A++ + RC+YVLE A  D F    G  R+D   E N  +  A+F  M+  G  G  R+A E  +LLLSLDP GDPM  LLA+D + L SRQ +F
Sbjct:  281 HDPNLIAHFLQRYPYHIDALLTMSEVFQHHGQMDHATDSIKRCMYVLELAWADQFDVSKGNCRMDIQTEHNAGFFKALFLLMKQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQF 409          
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Match: V9EAW3_PHYPR (EDR2_C domain-containing protein n=6 Tax=Phytophthora TaxID=4783 RepID=V9EAW3_PHYPR)

HSP 1 Score: 124 bits (311), Expect = 1.990e-30
Identity = 64/129 (49.61%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    4 HDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLESACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGRLLLSLDPLGDPMGCLLALDTHVLASRQGEF 390
            HDPNL+A F  + PYH DALL ++ VF H GQMD A++ + RC+YVLE A  D F    G  R+D   E N  +  A+F  M+  G  G  R+A E  +LLLSLDP GDPM  LLA+D + L SRQ +F
Sbjct:  496 HDPNLIAHFLQRYPYHIDALLTMSEVFQHHGQMDHATDCIKRCMYVLELAWADQFDVSKGNCRMDIQTEHNSGFFRALFLLMKQVGRRGCMRSAFETAKLLLSLDPQGDPMNVLLAIDYYALTSRQCQF 624          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6603.14479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK35_ECTSI9.890e-6783.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LA68_9PHAE1.040e-6683.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZGE8_9STRA7.060e-3957.81Transcriptional repressor TCF25-domain-containing ... [more]
A0A2D4CKE4_PYTIN1.990e-3146.51Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A024GI90_9STRA9.820e-3146.51Uncharacterized protein n=7 Tax=Albugo candida Tax... [more]
A0A5D6XJL8_9STRA1.450e-3048.84EDR2_C domain-containing protein n=1 Tax=Pythium b... [more]
W2QZ72_PHYPN1.480e-3049.61Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
G4YZT6_PHYSP1.480e-3050.39Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6G0PRE5_9STRA1.670e-3049.61Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
V9EAW3_PHYPR1.990e-3049.61EDR2_C domain-containing protein n=6 Tax=Phytophth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6603contigH-paniculata_contig6603:9806..11617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue4.7e-56
Seed eggNOG ortholog2880.D7FK35
Preferred nameTCF25
KEGG koko:K14206
KEGG TC2.A.17.4.1,2.A.17.4.2
KEGG Pathwayko04974,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006412,GO:0006414,GO:0006417,GO:0006508,GO:0006511,GO:0006518,GO:0006807,GO:0007275,GO:0007507,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0045892,GO:0045934,GO:0048513,GO:0048519,GO:0048523,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051252,GO:0051253,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0072344,GO:0072359,GO:0080090,GO:0140110,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990112,GO:1990116,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.ribosome-associated ubiquitin-dependent protein catabolic process
EggNOG OGsKOG2422@1,KOG2422@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size390
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6603.14479.1prot_H-paniculata_contig6603.14479.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6603 9806..11617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930779.0971527-CDS-H-paniculata_contig6603:9805..99431622930779.0971527-CDS-H-paniculata_contig6603:9805..9943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 9806..9943 -
1691481448.423831-CDS-H-paniculata_contig6603:9805..99431691481448.423831-CDS-H-paniculata_contig6603:9805..9943Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 9806..9943 -
1622930779.113422-CDS-H-paniculata_contig6603:10496..106491622930779.113422-CDS-H-paniculata_contig6603:10496..10649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 10497..10649 -
1691481448.435324-CDS-H-paniculata_contig6603:10496..106491691481448.435324-CDS-H-paniculata_contig6603:10496..10649Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 10497..10649 -
1622930779.129034-CDS-H-paniculata_contig6603:11518..116171622930779.129034-CDS-H-paniculata_contig6603:11518..11617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 11519..11617 -
1691481448.4453115-CDS-H-paniculata_contig6603:11518..116171691481448.4453115-CDS-H-paniculata_contig6603:11518..11617Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6603 11519..11617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6603.14479.1

>prot_H-paniculata_contig6603.14479.1 ID=prot_H-paniculata_contig6603.14479.1|Name=mRNA_H-paniculata_contig6603.14479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MHDPNLLAAFASQVPYHADALLQLAMVFAHTGQMDRASEFVGRCLYVLES
ACMDGFRPINGASRLDASLEVNRTYLAAMFRHMQMSGMMGGARTALEVGR
LLLSLDPLGDPMGCLLALDTHVLASRQGEF
back to top

mRNA from alignment at H-paniculata_contig6603:9806..11617-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6603.14479.1 ID=mRNA_H-paniculata_contig6603.14479.1|Name=mRNA_H-paniculata_contig6603.14479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig6603:9806..11617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGACCCCAACCTTCTGGCAGCGTTTGCGTCGCAAGTACCATACCA CGCCGATGCCTTGCTGCAGCTCGCGATGGTGTTTGCGCACACCGGACAGG TCGGTACTTTCTCGACTGCTCTTTTAGAGATCAGATCAATGGCTCCATCT GTGTGGAGATAAGATTATTTGTTCTGCTTTGTGTGCCCTTCGATGTAGGA AGGAGGTCAACGCCGGTGATGCAGCACCACAGGGGGAAAATATGTGATGA TGTCCTGTGGTGTTAACCTATATGTATCTGTAAGGTGGTGAGGTTCAGAC ATGCGAACGGGTATGTGAACGTTTACATTTCAGCGCGACTTCTACCTACG AATAGCACAGCGTTTTCCCTCTCCAGGCATGCGCTCGTGCCTCTCTCCCT TCCTTTTCCTTAGTATTATAGCGAGGGTTTTGAATCGTGAGATCTGCGAA ATGAAGGCGACAGCAGTACTGTTATCATGTATCAGGGGATGGAGAATGGC GCCTAGGAGAAGAAAAGAGGTTGCTGTAGATACAACGAGATTCATCTTTT GGACCCACCTTTAACCTAGGAGGAACGTGAGGCGCGATTGTCCGTCGTCG ATTGCTCGTACAGTAAGAGAACCCTACCCACTCCTTTTCTGTCAAGGACG CGTCATTGATAGTTTAAATAATGGCGAAGGTCTACCAAAGGTGACTACAC ATCCCTTGAAATGTTTTTTTCACTAATGGCCATCCAGCCGTATCGTAGAA GCTACAATAGACCCTCAGGCCGTTTGATACGGACAGAATTTACACTCAGA ACCTGTTTTAAAAAAAATTAAATTGACATACAGTTAATGTTAGATTTTAT CACAATTCAGCTTTTGACTGTAAATTCTGGTGGCCATATCAAACGACCTC CGCACAACGAGTGTTATACGCTTTCCATTCCCTTCCCTCTCGGTTGCGCG CTAATGCTTCGAGCACAGATGGATCGTGCTTCAGAGTTCGTAGGACGTTG CCTTTATGTGCTGGAGAGCGCATGTATGGACGGATTCCGTCCCATCAATG GCGCATCGCGCCTGGACGCGTCCCTCGAGGTCAACAGGACCTATCTGGCG GCGATGTTCAGGCATATGCAGGTGACTAATTCCGGGGCGATTCACACGAC CGGGATTTGTGTGTGATTTTACACGCGACCAGACACGGAATCGATTCGGG GAGGGATCTGGAAGATTTTGTTTGTACAACCGATTCGCGGTCGGTTTTGT ATCATATTTTTTGCCGGTCGGCGGTCAGTTTCTTATGTCTGAACGTGTTA TGGCAGAGACAGCTGATCCTTTTGTATGTGAGACTGTTGTAGGTGGGTGG GTGGGTGGGTGGGTGGGTGGGCGTGGGTGTGGGTGTGTGTTTTGTCAAGT TCTCCCATGACCACCTGTTGAATCAGAAAGTAATGTCCCATGAGCATCTT TCTAACCCGAGAATTACACATGACCAGAGCCAGGACGGGTTCGAGGCAGA AACCTATTCGATGTTTTCATTTTTACAAACGGTTCGCAGTCGGTTCTATG AGATGTTACTGGTCATGCGAAACATCGAGTACGGCCCCCCGCCCCTCCCG CGCTCCCACTCTTGTCCTGGCCCCCACCTCCACCGCGAATCCTCTCTCCA ACCTTACCACCGGTAAAACATGAGATGTCTGGCATGATGGGTGGGGCACG AACAGCTCTCGAAGTCGGGCGGCTACTGCTCTCTCTGGATCCACTCGGCG ACCCGATGGGCTGCCTGCTGGCCTTAGATACTCACGTCCTGGCTAGCCGA CAGGGGGAGTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6603:9806..11617-

>mRNA_H-paniculata_contig6603.14479.1 ID=mRNA_H-paniculata_contig6603.14479.1|Name=mRNA_H-paniculata_contig6603.14479.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig6603:9806..11617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACGACCCCAACCTTCTGGCAGCGTTTGCGTCGCAAGTACCATACCA
CGCCGATGCCTTGCTGCAGCTCGCGATGGTGTTTGCGCACACCGGACAGA
TGCACGACCCCAACCTTCTGGCAGCGTTTGCGTCGCAAGTACCATACCAC
GCCGATGCCTTGCTGCAGCTCGCGATGGTGTTTGCGCACACCGGACAGAT
GGATCGTGCTTCAGAGTTCGTAGGACGTTGCCTTTATGTGCTGGAGAGCG
CATGTATGGACGGATTCCGTCCCATCAATGGCGCATCGCGCCTGGACGCG
TCCCTCGAGGTCAACAGGACCTATCTGGCGGCGATGTTCAGGCATATGCA
GATGGATCGTGCTTCAGAGTTCGTAGGACGTTGCCTTTATGTGCTGGAGA
GCGCATGTATGGACGGATTCCGTCCCATCAATGGCGCATCGCGCCTGGAC
GCGTCCCTCGAGGTCAACAGGACCTATCTGGCGGCGATGTTCAGGCATAT
GCAGATGTCTGGCATGATGGGTGGGGCACGAACAGCTCTCGAAGTCGGGC
GGCTACTGCTCTCTCTGGATCCACTCGGCGACCCGATGGGCTGCCTGCTG
GCCTTAGATACTCACGTCCTGGCTAGCCGACAGGGGGAGTTCATGTCTGG
CATGATGGGTGGGGCACGAACAGCTCTCGAAGTCGGGCGGCTACTGCTCT
CTCTGGATCCACTCGGCGACCCGATGGGCTGCCTGCTGGCCTTAGATACT
CACGTCCTGGCTAGCCGACAGGGGGAGTTC
back to top