prot_H-paniculata_contig6594.14468.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig6594.14468.1
Unique Name	prot_H-paniculata_contig6594.14468.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	92

Homology

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7SYS1_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SYS1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.080e-16
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLF 79
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +
Sbjct:   17 GVCGTCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRY 95

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 79.7 bits (195), Expect = 2.840e-16
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 83
            GVC+ CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKS++L  LK +  D+
Sbjct:   35 GVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDM 117

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.130e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 83
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.020e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 83
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:   55 GVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 137

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 8.250e-16
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 83
            GVC  CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:  101 GVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 183

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.100e-15
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDI 83
            G+C+ CER K +K+       E   E LELVHTD+ GPV+ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  D+
Sbjct:  105 GICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDM 187

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A1X7SX46_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SX46_AMPQE)

HSP 1 Score: 79.3 bits (194), Expect = 2.830e-15
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 0

Query:    1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLHI 91
            L  C +C  GK+ +QP K   E H   +L+LVH+D+ GP+  +S GG+R+ + F DD SR  ++Y ++HKSEAL   + FE  +    GL I
Sbjct:  343 LSFCESCIEGKMHRQPFKSSGEIHSTRKLQLVHSDVCGPMPTDSLGGKRYFVSFTDDFSRCSQIYLMKHKSEALNKFREFEAMVKNETGLSI 434

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 75.1 bits (183), Expect = 2.230e-14
Identity = 37/89 (41.57%), Postives = 53/89 (59.55%), Query Frame = 0

Query:    1 LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIG 88
            L  C AC  GK+++QP K   E     +L+L+H+D+ GP+  ES GG ++ + F+DD SR  KVY ++HKSE L   K FE   +   G
Sbjct:   85 LPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECG 173

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BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 74.7 bits (182), Expect = 2.280e-14
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIA 84
            GV   CER K +K+       E   E LEL+HTD+ GP++ ES GG R+AI F DD++R R VY ++HKSE+L  LK +  DI+
Sbjct:   35 GVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDIS 118

[Close]

BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Match: W7THS2_9STRA (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7THS2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.790e-14
Identity = 41/90 (45.56%), Postives = 54/90 (60.00%), Query Frame = 0

Query:    2 GVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVD-ESFGGRRFAIIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLH 90
            GVC   ER K +K        E   + LELVHTD+ GPV+ ES GG R+AI F DD++R R +Y +RHKSE+L  LK +  D+   +  H
Sbjct:  168 GVCGPYERAKQTKVSFGTKSRERAEKPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRMIYPMRHKSESLNCLKRYIADMKVLLRDH 257

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig6594.14468.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
W7SYS1_9STRA	1.080e-16	51.90	Retrovirus-related pol polyprotein from transposon...	[more]
K8YS61_NANGC	2.840e-16	49.40	Retrovirus-related pol polyprotein from transposon...	[more]
W7TGQ6_9STRA	4.130e-16	50.60	Retrotransposon unclassified n=1 Tax=Nannochlorops...	[more]
W7TIQ5_9STRA	8.020e-16	50.60	Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita...	[more]
W7T174_9STRA	8.250e-16	50.60	Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita...	[more]
W7T9I7_9STRA	1.100e-15	49.40	Copia-like retrotransposable element n=1 Tax=Nanno...	[more]
A0A1X7SX46_AMPQE	2.830e-15	41.30	Uncharacterized protein n=1 Tax=Amphimedon queensl...	[more]
A0A0S7KIZ2_9TELE	2.230e-14	41.57	POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax...	[more]
K8Z011_NANGC	2.280e-14	47.62	Retrovirus-related pol polyprotein from transposon...	[more]
W7THS2_9STRA	6.790e-14	45.56	Retrovirus-related pol polyprotein from transposon...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 19..90 e-value: 1.2E-6 score: 29.8
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 27..85

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig6594	contig	H-paniculata_contig6594:11953..12228 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig6594.14468.1	mRNA_H-paniculata_contig6594.14468.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig6594 11953..12228 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig6594.14468.1 ID=prot_H-paniculata_contig6594.14468.1|Name=mRNA_H-paniculata_contig6594.14468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
LGVCSACERGKVSKQPVKKYREEHIMEQLELVHTDIAGPVDESFGGRRFA
IIFVDDHSRVRKVYALRHKSEALGALKLFEWDIAKAIGLHI*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036397	RNaseH_sf
IPR012337	RNaseH-like_sf